Rmu_sc0000401.1_g000014

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000401.1
Physical Location & Seq
Reverse (-)
57861 .. 63446
5586 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000401.1_g000014.1.cds

Sequence Viewer

Length: 1215 bp
atgtacctctccggaaccgacggcctcgtcgcttactccgacgtcgccagagcgacgtcgtatatgatgtcctcctggcccgcccccgatgccgaaccctgcccgccgggcttcaaacgcacctctgaagcactctgccatcaggctcttttgggtgcccataatccgattgggcaaatggaagcttggtattcaacaaatcctttagcaaaacgacctagattcgagaatacaagcttgcctatttatccacagaggccaggagagaaagattgtgcccactatatgcaaacaagaacctgtaaatttggagagggctgcaagtttgaccatcctatttgggttcctgatggtggaatcccagattggaaagagtgtgcgtcagaaaatggtgatgtttatgccttacccgagaggccttctgaacctgcatgtgcattctacttgaaaactgggcaatgcaagtatggtgcaacctgcaaatttaatcacccaaaagacatccagataccatcagccactcaagagaataaatctggcgaaactgagacagatcttaagacggagggcagtgaagttgctgtgaagcctcttgtttcattcactccagcactattatataactccaaacagcttcctgtacgaccgggtgaagctgattgtccattctacctgaaaactggaagacgaccaaaaactcataatggcgtttgttctcttaaatctgctgcaagtatggggccacttgccgatatcaatccacctgttgctgcaatcagctatcctctttcagcgccttcagttgcagtttttaacatgggagttgctaatccagctgccttcactaatcaaactttggcacaaccaacggtaggagcgagtcctactgtttatcctcagaggtttggacaggctgagtgtgaatactatatgaagacaggggaatgtaagtatggtgcgcaatgcagattccatcacccgattgataggccagcagtggcgttgtcaacaacaaagccatctcaacaagaaaatgtgaagcttacgcttgctggactacctaggagagagggtgccgctatctgtgtgtattaccttaaaaccggcacatgcaagtatggtgcaacctgcagatttgaccacccacctcctggcgaagttgtagcaatggcagcttcacaagcaaaatctgattctattggaggaaaagcataa

Protein Analysis

404

Amino Acids

43.72

Weight (kDa)

8.22

Isoelectric Point (pI)

44.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 26
AatII GACGTC 2 cut(s) 45, 59
Acc16I TGCGCA 1 cut(s) 960
Acc36I ACCTGC 3 cut(s) 436, 485, 1136
AccB1I GGYRCC 2 cut(s) 155, 1073
AccB7I CCANNNNNTGG 1 cut(s) 1151
AccIII TCCGGA 1 cut(s) 11
AciI CCGC 3 cut(s) 81, 104, 1077
AcsI RAATTY 2 cut(s) 305, 482
AcuI CTGAAG 2 cut(s) 147, 783
AcyI GRCGYC 2 cut(s) 42, 56
AfaI GTAC 2 cut(s) 5, 642
AfiI CCNNNNNNNGG 3 cut(s) 353, 872, 1151
AflII CTTAAG 1 cut(s) 557
AgsI TTSAA 3 cut(s) 115, 195, 448
AjnI CCWGG 3 cut(s) 74, 259, 1150
AjuI GAANNNNNNNTTGG 2 cut(s) 349, 381
AluBI AGCT 8 cut(s) 185, 237, 634, 656, 780, 836, 1042, 1175
AluI AGCT 8 cut(s) 185, 237, 634, 656, 780, 836, 1042, 1175
Alw26I GTCTC 1 cut(s) 542
Ama87I CYCGRG 1 cut(s) 410
Aor13HI TCCGGA 1 cut(s) 11
AoxI GGCC 6 cut(s) 22, 77, 257, 416, 740, 989
ApeKI GCWGC 5 cut(s) 318, 728, 770, 836, 1172
ApoI RAATTY 2 cut(s) 305, 482
AspA2I CCTAGG 1 cut(s) 1061
AspLEI GCGC 2 cut(s) 796, 961
AspS9I GGNCC 2 cut(s) 78, 740
AsuC2I CCSGG 2 cut(s) 108, 648
AsuHPI GGTGA 4 cut(s) 404, 482, 662, 968
AvaI CYCGRG 1 cut(s) 410
AvrII CCTAGG 1 cut(s) 1061
BaeGI GKGCMC 2 cut(s) 160, 280
BanI GGYRCC 2 cut(s) 155, 1073
BbsI GAAGAC 2 cut(s) 691, 941
BbvI GCAGC 5 cut(s) 305, 715, 757, 823, 1184
BccI CCATC 6 cut(s) 147, 339, 344, 520, 981, 1027
BceAI ACGGC 1 cut(s) 37
BciT130I CCWGG 3 cut(s) 76, 261, 1152
BcnI CCSGG 2 cut(s) 108, 648
BcoDI GTCTC 1 cut(s) 542
BfaI CTAG 2 cut(s) 219, 1062
BfmI CTRYAG 1 cut(s) 1129
BfoI RGCGCY 1 cut(s) 797
BfrI CTTAAG 1 cut(s) 557
BfuAI ACCTGC 3 cut(s) 436, 485, 1136
BglI GCCNNNNNGGC 1 cut(s) 108
BglII AGATCT 1 cut(s) 553
BisI GCNGC 6 cut(s) 319, 729, 771, 837, 1077, 1173
BlnI CCTAGG 1 cut(s) 1061
BlsI GCNGC 6 cut(s) 320, 730, 772, 838, 1078, 1174
Bme1390I CCNGG 5 cut(s) 76, 108, 261, 648, 1152
BmeT110I CYCGRG 1 cut(s) 410
BmgT120I GGNCC 2 cut(s) 78, 740
BmiI GGNNCC 5 cut(s) 16, 157, 345, 741, 1075
BmrFI CCNGG 5 cut(s) 76, 108, 261, 648, 1152
BmrI ACTGGG 1 cut(s) 462
BmsI GCATC 1 cut(s) 79
BmuI ACTGGG 1 cut(s) 462
BpiI GAAGAC 2 cut(s) 691, 941
BpmI CTGGAG 1 cut(s) 591
BpuEI CTTGAG 1 cut(s) 507
BpuMI CCSGG 2 cut(s) 108, 648
BsaBI GATNNNNATC 1 cut(s) 756
BsaHI GRCGYC 2 cut(s) 42, 56
BsaJI CCNNGG 1 cut(s) 1061
BsaWI WCCGGW 1 cut(s) 11
BsaXI ACNNNNNCTCC 2 cut(s) 1057, 1087
Bsc4I CCNNNNNNNGG 3 cut(s) 353, 872, 1151
Bse118I RCCGGY 1 cut(s) 1103
Bse1I ACTGG 2 cut(s) 457, 685
Bse3DI GCAATG 3 cut(s) 464, 968, 1173
Bse8I GATNNNNATC 1 cut(s) 756
BseAI TCCGGA 1 cut(s) 11
BseBI CCWGG 3 cut(s) 76, 261, 1152
BseDI CCNNGG 1 cut(s) 1061
BseGI GGATG 2 cut(s) 331, 501
BseJI GATNNNNATC 1 cut(s) 756
BseLI CCNNNNNNNGG 3 cut(s) 353, 872, 1151
BseMI GCAATG 3 cut(s) 464, 968, 1173
BseMII CTCAG 3 cut(s) 537, 906, 911
BseNI ACTGG 2 cut(s) 457, 685
BseSI GKGCMC 2 cut(s) 160, 280
BseXI GCAGC 5 cut(s) 305, 715, 757, 823, 1184
Bsh1285I CGRYCG 1 cut(s) 647
BshFI GGCC 6 cut(s) 24, 79, 259, 418, 742, 991
BshNI GGYRCC 2 cut(s) 155, 1073
BsiEI CGRYCG 1 cut(s) 647
BsiHKCI CYCGRG 1 cut(s) 410
BsiSI CCGG 4 cut(s) 12, 107, 647, 1104
BslI CCNNNNNNNGG 3 cut(s) 353, 872, 1151
BsmAI GTCTC 1 cut(s) 542
BsmI GAATGC 1 cut(s) 437
BsnI GGCC 6 cut(s) 24, 79, 259, 418, 742, 991
BsoBI CYCGRG 1 cut(s) 410
Bsp1286I GDGCHC 2 cut(s) 160, 280
Bsp13I TCCGGA 1 cut(s) 11
Bsp143I GATC 1 cut(s) 553
BspACI CCGC 3 cut(s) 81, 104, 1077
BspANI GGCC 6 cut(s) 24, 79, 259, 418, 742, 991
BspCNI CTCAG 3 cut(s) 538, 907, 910
BspEI TCCGGA 1 cut(s) 11
BspLI GGNNCC 5 cut(s) 16, 157, 345, 741, 1075
BspMAI CTGCAG 1 cut(s) 1133
BspMI ACCTGC 3 cut(s) 436, 485, 1136
BspT107I GGYRCC 2 cut(s) 155, 1073
BspTI CTTAAG 1 cut(s) 557
BsrDI GCAATG 3 cut(s) 464, 968, 1173
BsrFI RCCGGY 1 cut(s) 1103
BsrI ACTGG 2 cut(s) 457, 685
BssAI RCCGGY 1 cut(s) 1103
BssECI CCNNGG 1 cut(s) 1061
BssMI GATC 1 cut(s) 553
BssNI GRCGYC 2 cut(s) 42, 56
BssT1I CCWWGG 1 cut(s) 1061
Bst2UI CCWGG 3 cut(s) 76, 261, 1152
Bst4CI ACNGT 2 cut(s) 871, 889
BstACI GRCGYC 2 cut(s) 42, 56
BstAFI CTTAAG 1 cut(s) 557
BstC8I GCNNGC 5 cut(s) 81, 104, 239, 993, 1050
BstDEI CTNAG 3 cut(s) 546, 897, 915
BstF5I GGATG 2 cut(s) 331, 501
BstH2I RGCGCY 1 cut(s) 797
BstHHI GCGC 2 cut(s) 796, 961
BstKTI GATC 1 cut(s) 556
BstMAI GTCTC 1 cut(s) 542
BstMBI GATC 1 cut(s) 553
BstMCI CGRYCG 1 cut(s) 647
BstMWI GCNNNNNNNGC 6 cut(s) 89, 108, 117, 833, 1172, 1181
BstNI CCWGG 3 cut(s) 76, 261, 1152
BstNSI RCATGY 2 cut(s) 435, 1113
BstSCI CCNGG 5 cut(s) 74, 106, 259, 646, 1150
BstSFI CTRYAG 1 cut(s) 1129
BstSLI GKGCMC 2 cut(s) 160, 280
BstV1I GCAGC 5 cut(s) 305, 715, 757, 823, 1184
BstV2I GAAGAC 2 cut(s) 691, 941
BstX2I RGATCY 1 cut(s) 553
BstYI RGATCY 1 cut(s) 553
BsuRI GGCC 6 cut(s) 24, 79, 259, 418, 742, 991
BtsCI GGATG 2 cut(s) 331, 501
BtsI GCAGTG 2 cut(s) 577, 1002
BtsIMutI CAGTG 2 cut(s) 577, 1002
BveI ACCTGC 3 cut(s) 436, 485, 1136
Cac8I GCNNGC 5 cut(s) 81, 104, 239, 993, 1050
CfoI GCGC 2 cut(s) 796, 961
Cfr10I RCCGGY 1 cut(s) 1103
Cfr13I GGNCC 2 cut(s) 78, 740
CseI GACGC 1 cut(s) 369
Csp6I GTAC 2 cut(s) 4, 641
CviAII CATG 3 cut(s) 432, 817, 1110
CviQI GTAC 2 cut(s) 4, 641
DdeI CTNAG 3 cut(s) 546, 897, 915
DpnI GATC 1 cut(s) 555
DpnII GATC 1 cut(s) 553
DrdI GACNNNNNNGTC 1 cut(s) 26
DseDI GACNNNNNNGTC 1 cut(s) 26
Eco130I CCWWGG 1 cut(s) 1061
Eco147I AGGCCT 1 cut(s) 418
Eco32I GATATC 1 cut(s) 754
Eco57I CTGAAG 2 cut(s) 147, 783
Eco88I CYCGRG 1 cut(s) 410
EcoRII CCWGG 3 cut(s) 74, 259, 1150
EcoRV GATATC 1 cut(s) 754
EcoT14I CCWWGG 1 cut(s) 1061
ErhI CCWWGG 1 cut(s) 1061
FaeI CATG 3 cut(s) 435, 820, 1113
FatI CATG 3 cut(s) 431, 816, 1109
FauI CCCGC 2 cut(s) 88, 111
Fnu4HI GCNGC 6 cut(s) 319, 729, 771, 837, 1077, 1173
FokI GGATG 2 cut(s) 318, 488
Fsp4HI GCNGC 6 cut(s) 319, 729, 771, 837, 1077, 1173
FspBI CTAG 2 cut(s) 219, 1062
FspI TGCGCA 1 cut(s) 960
GlaI GCGC 2 cut(s) 795, 960
GluI GCNGC 6 cut(s) 319, 729, 771, 837, 1077, 1173
GsuI CTGGAG 1 cut(s) 591
HaeII RGCGCY 1 cut(s) 797
HaeIII GGCC 6 cut(s) 24, 79, 259, 418, 742, 991
HapII CCGG 4 cut(s) 12, 107, 647, 1104
HgaI GACGC 1 cut(s) 369
HhaI GCGC 2 cut(s) 796, 961
Hin1I GRCGYC 2 cut(s) 42, 56
Hin1II CATG 3 cut(s) 435, 820, 1113
Hin6I GCGC 2 cut(s) 794, 959
HinP1I GCGC 2 cut(s) 794, 959
HincII GTYRAC 1 cut(s) 1008
HindII GTYRAC 1 cut(s) 1008
HindIII AAGCTT 3 cut(s) 183, 235, 1040
HinfI GANTC 5 cut(s) 222, 357, 880, 969, 1193
HpaII CCGG 4 cut(s) 12, 107, 647, 1104
HphI GGTGA 4 cut(s) 404, 482, 662, 968
Hpy166II GTNNAC 1 cut(s) 1008
Hpy188I TCNGA 7 cut(s) 40, 127, 168, 385, 424, 900, 1192
Hpy188III TCNNGA 5 cut(s) 12, 226, 347, 505, 524
Hpy8I GTNNAC 1 cut(s) 1008
Hpy99I CGWCG 6 cut(s) 23, 32, 44, 47, 58, 61
HpyAV CCTTC 3 cut(s) 429, 807, 850
HpyCH4III ACNGT 2 cut(s) 871, 889
HpyCH4IV ACGT 2 cut(s) 42, 56
HpyF10VI GCNNNNNNNGC 6 cut(s) 89, 108, 117, 833, 1172, 1181
HpyF3I CTNAG 3 cut(s) 546, 897, 915
HpySE526I ACGT 2 cut(s) 42, 56
Hsp92I GRCGYC 2 cut(s) 42, 56
Hsp92II CATG 3 cut(s) 435, 820, 1113
HspAI GCGC 2 cut(s) 794, 959
Kpn2I TCCGGA 1 cut(s) 11
Kzo9I GATC 1 cut(s) 553
LmnI GCTCC 1 cut(s) 875
Lsp1109I GCAGC 5 cut(s) 305, 715, 757, 823, 1184
LweI GCATC 1 cut(s) 79
MaeI CTAG 2 cut(s) 219, 1062
MaeII ACGT 2 cut(s) 42, 56
MalI GATC 1 cut(s) 555
MboI GATC 1 cut(s) 553
MboII GAAGA 2 cut(s) 696, 946
MflI RGATCY 1 cut(s) 553
MhlI GDGCHC 2 cut(s) 160, 280
MluCI AATT 2 cut(s) 305, 482
MlyI GAGTC 1 cut(s) 889
MmeI TCCRAC 1 cut(s) 63
MroI TCCGGA 1 cut(s) 11
MseI TTAA 5 cut(s) 486, 558, 720, 813, 1098
MspA1I CMGCKG 1 cut(s) 836
MspCI CTTAAG 1 cut(s) 557
MspI CCGG 4 cut(s) 12, 107, 647, 1104
MspR9I CCNGG 5 cut(s) 76, 108, 261, 648, 1152
Mva1269I GAATGC 1 cut(s) 437
MvaI CCWGG 3 cut(s) 76, 261, 1152
MwoI GCNNNNNNNGC 6 cut(s) 89, 108, 117, 833, 1172, 1181
NciI CCSGG 2 cut(s) 108, 648
NdeII GATC 1 cut(s) 553
NlaIII CATG 3 cut(s) 435, 820, 1113
NlaIV GGNNCC 5 cut(s) 16, 157, 345, 741, 1075
NsbI TGCGCA 1 cut(s) 960
NspI RCATGY 2 cut(s) 435, 1113
PceI AGGCCT 1 cut(s) 418
PcsI WCGNNNNNNNCGW 2 cut(s) 36, 875
PctI GAATGC 1 cut(s) 437
PfeI GAWTC 4 cut(s) 222, 357, 969, 1193
PflMI CCANNNNNTGG 1 cut(s) 1151
PkrI GCNGC 6 cut(s) 320, 730, 772, 838, 1078, 1174
PleI GAGTC 1 cut(s) 888
PpsI GAGTC 1 cut(s) 888
Psp6I CCWGG 3 cut(s) 74, 259, 1150
PspGI CCWGG 3 cut(s) 74, 259, 1150
PspN4I GGNNCC 5 cut(s) 16, 157, 345, 741, 1075
PspPI GGNCC 2 cut(s) 78, 740
PstI CTGCAG 1 cut(s) 1133
PsuI RGATCY 1 cut(s) 553
PvuII CAGCTG 1 cut(s) 836
RsaI GTAC 2 cut(s) 5, 642
RsaNI GTAC 2 cut(s) 4, 641
SaqAI TTAA 5 cut(s) 486, 558, 720, 813, 1098
SatI GCNGC 6 cut(s) 319, 729, 771, 837, 1077, 1173
Sau3AI GATC 1 cut(s) 553
Sau96I GGNCC 2 cut(s) 78, 740
SchI GAGTC 1 cut(s) 889
ScrFI CCNGG 5 cut(s) 76, 108, 261, 648, 1152
SduI GDGCHC 2 cut(s) 160, 280
SfaNI GCATC 1 cut(s) 79
SfcI CTRYAG 1 cut(s) 1129
SmlI CTYRAG 2 cut(s) 522, 557
SmoI CTYRAG 2 cut(s) 522, 557
Sse9I AATT 2 cut(s) 305, 482
SseBI AGGCCT 1 cut(s) 418
SsiI CCGC 3 cut(s) 81, 104, 1077
SspMI CTAG 2 cut(s) 219, 1062
StuI AGGCCT 1 cut(s) 418
StyD4I CCNGG 5 cut(s) 74, 106, 259, 646, 1150
StyI CCWWGG 1 cut(s) 1061
TaaI ACNGT 2 cut(s) 871, 889
TaiI ACGT 2 cut(s) 45, 59
TaqI TCGA 1 cut(s) 225
TasI AATT 2 cut(s) 305, 482
TauI GCSGC 1 cut(s) 1079
TfiI GAWTC 4 cut(s) 222, 357, 969, 1193
Tru1I TTAA 5 cut(s) 486, 558, 720, 813, 1098
Tru9I TTAA 5 cut(s) 486, 558, 720, 813, 1098
TscAI CASTG 2 cut(s) 577, 1002
TseI GCWGC 5 cut(s) 318, 728, 770, 836, 1172
TspDTI ATGAA 2 cut(s) 588, 947
TspGWI ACGGA 1 cut(s) 578
TspRI CASTG 2 cut(s) 577, 1002
Van91I CCANNNNNTGG 1 cut(s) 1151
Vha464I CTTAAG 1 cut(s) 557
XapI RAATTY 2 cut(s) 305, 482
XceI RCATGY 2 cut(s) 435, 1113
XcmI CCANNNNNNNNNTGG 2 cut(s) 167, 1148
XmaJI CCTAGG 1 cut(s) 1061
XspI CTAG 2 cut(s) 219, 1062
ZraI GACGTC 2 cut(s) 43, 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.