Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000820

Physical Location & Seq

Genomic Coordinates Reverse (-)

17360530 .. 17360853

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G014450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGTGCAGTGAGATATCTATCTCCTACTTTTGTAATGTGCATTATCTATCTAGTTTTGTTGACTTGGTTATATTCCCAAAAATATGTTTAAAGTTTAAACAGTTCTACTTCAAAACTGGGCAATGCAAGTATGGTGCAACCTGCAAATTTAATCACCCAAAAGACATCCAGATACCATCAGCCACTCAAGAGAATAAATCTGGCGAAACTGAGACAGATCTTAAGACGGAAGGCAGTGAAGTTGCTGTGAAGCCTCTTGTTTCATTTACTCCAGCACTGTTATGTTGTTTTTGGTTTGTTGTATGCAGTTATTGTTGTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001709 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0032502 GO:0034248 GO:0034249 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045165 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048869 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1903311 GO:1903313 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

107

Amino Acids

12.08

Weight (kDa)

7.46

Isoelectric Point (pI)

27.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	34 - 54	3.8e-08	Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12680
fragaria_vesca	FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640
malus_domestica	MD03G1280400.v1.1 MD06G1158700.v1.1 MD06G1158900.v1.1 MD06G1159100.v1.1 MD10G1219700.v1.1
prunus_persica	Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.7G013500_v2.0.a1 Prupe.8G067100_v2.0.a1
pyrus_communis	pycom06g14160 pycom06g14170 pycom10g18590
rosa_chinensis	RchiOBHm_Chr5g0022551 RchiOBHm_Chr5g0022581 RchiOBHm_Chr5g0022611 RchiOBHm_Chr5g0022711 RchiOBHm_Chr5g0022731 RchiOBHm_Chr5g0022751 RchiOBHm_Chr5g0022761 RchiOBHm_Chr5g0022841 RchiOBHm_Chr5g0022861 RchiOBHm_Chr5g0022911
rosa_laevigata	RLG00000032672 RLG00000032674 RLG00000032675 RLG00000032677 RLG00000032679 RLG00000035293
rosa_multiflora	Rmu_sc0000401.1_g000006 Rmu_sc0000401.1_g000007 Rmu_sc0000401.1_g000014 Rmu_sc0000401.1_g000026 Rmu_sc0000401.1_g000028 Rmu_sc0010181.1_g000001 Rmu_sc0010181.1_g000004 Rmu_sc0010181.1_g000009 Rmu_sc0042157.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056450 Rroxscaffold_1G00056490
rosa_rugosa	Rorug05G0075100
rosa_samantha	Rh5AG161600 Rh5BG099400 Rh5BG160400 Rh5BG160700 Rh5CG175100 Rh5DG161100 Rh5DG161300 Rh5DG161500 Rh5DG161600 Rh5DG161700 Rh5DG161900 Rh5DG162000 Rh5DG162400
rosa_wichuraiana	Rw5G014410 Rw5G014450 Rw5G014490 Rw5G014510 Rw5G014540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	149
AcsI	RAATTY	1 cut(s)	146
AflII	CTTAAG	1 cut(s)	221
AgsI	TTSAA	1 cut(s)	112
Alw26I	GTCTC	1 cut(s)	206
ApoI	RAATTY	1 cut(s)	146
AsuHPI	GGTGA	1 cut(s)	146
BccI	CCATC	1 cut(s)	184
BcoDI	GTCTC	1 cut(s)	206
BfaI	CTAG	1 cut(s)	51
BfrI	CTTAAG	1 cut(s)	221
BfuAI	ACCTGC	1 cut(s)	149
BglII	AGATCT	1 cut(s)	217
BmrI	ACTGGG	1 cut(s)	126
BmuI	ACTGGG	1 cut(s)	126
BpmI	CTGGAG	1 cut(s)	255
BpuEI	CTTGAG	1 cut(s)	171
BsaBI	GATNNNNATC	1 cut(s)	17
Bse1I	ACTGG	1 cut(s)	121
Bse3DI	GCAATG	1 cut(s)	128
Bse8I	GATNNNNATC	1 cut(s)	17
BseGI	GGATG	1 cut(s)	165
BseJI	GATNNNNATC	1 cut(s)	17
BseMI	GCAATG	1 cut(s)	128
BseMII	CTCAG	1 cut(s)	201
BseNI	ACTGG	1 cut(s)	121
BsgI	GTGCAG	1 cut(s)	25
BsmAI	GTCTC	1 cut(s)	206
Bsp143I	GATC	1 cut(s)	217
BspCNI	CTCAG	1 cut(s)	202
BspMI	ACCTGC	1 cut(s)	149
BspTI	CTTAAG	1 cut(s)	221
BsrDI	GCAATG	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	121
BssMI	GATC	1 cut(s)	217
Bst4CI	ACNGT	2 cut(s)	102, 279
BstAFI	CTTAAG	1 cut(s)	221
BstDEI	CTNAG	1 cut(s)	210
BstF5I	GGATG	1 cut(s)	165
BstKTI	GATC	1 cut(s)	220
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	1 cut(s)	217
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BtsCI	GGATG	1 cut(s)	165
BtsI	GCAGTG	2 cut(s)	13, 241
BtsIMutI	CAGTG	3 cut(s)	13, 241, 275
BveI	ACCTGC	1 cut(s)	149
CviJI	RGCY	2 cut(s)	182, 253
CviKI_1	RGCY	2 cut(s)	182, 253
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
DraI	TTTAAA	2 cut(s)	90, 97
Eco32I	GATATC	1 cut(s)	15
EcoRV	GATATC	1 cut(s)	15
FaiI	YATR	5 cut(s)	71, 85, 132, 283, 304
FokI	GGATG	1 cut(s)	152
FspBI	CTAG	1 cut(s)	51
GsuI	CTGGAG	1 cut(s)	255
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HphI	GGTGA	1 cut(s)	146
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188III	TCNNGA	2 cut(s)	169, 188
Hpy8I	GTNNAC	1 cut(s)	61
HpyAV	CCTTC	1 cut(s)	224
HpyCH4III	ACNGT	2 cut(s)	102, 279
HpyCH4V	TGCA	6 cut(s)	6, 40, 126, 137, 144, 306
HpyF3I	CTNAG	1 cut(s)	210
Kzo9I	GATC	1 cut(s)	217
LpnPI	CCDG	5 cut(s)	102, 154, 182, 186, 285
MaeI	CTAG	1 cut(s)	51
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MflI	RGATCY	1 cut(s)	217
MluCI	AATT	1 cut(s)	146
MnlI	CCTC	1 cut(s)	264
MseI	TTAA	4 cut(s)	89, 96, 150, 222
MslI	CAYNNNNRTG	1 cut(s)	280
MspCI	CTTAAG	1 cut(s)	221
MssI	GTTTAAAC	1 cut(s)	97
NdeII	GATC	1 cut(s)	217
PmeI	GTTTAAAC	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	217
RseI	CAYNNNNRTG	1 cut(s)	280
SaqAI	TTAA	4 cut(s)	89, 96, 150, 222
Sau3AI	GATC	1 cut(s)	217
SetI	ASST	1 cut(s)	143
SmiMI	CAYNNNNRTG	1 cut(s)	280
SmlI	CTYRAG	2 cut(s)	186, 221
SmoI	CTYRAG	2 cut(s)	186, 221
Sse9I	AATT	1 cut(s)	146
SspMI	CTAG	1 cut(s)	51
TaaI	ACNGT	2 cut(s)	102, 279
TasI	AATT	1 cut(s)	146
Tru1I	TTAA	4 cut(s)	89, 96, 150, 222
Tru9I	TTAA	4 cut(s)	89, 96, 150, 222
TscAI	CASTG	3 cut(s)	13, 241, 282
TspDTI	ATGAA	1 cut(s)	252
TspGWI	ACGGA	1 cut(s)	242
TspRI	CASTG	3 cut(s)	13, 241, 282
Vha464I	CTTAAG	1 cut(s)	221
XapI	RAATTY	1 cut(s)	146
XspI	CTAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.