zinc finger CCCH domain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 509, 782 |
| AccB1I | GGYRCC | 1 cut(s) | 125 |
| AccI | GTMKAC | 1 cut(s) | 85 |
| AccII | CGCG | 1 cut(s) | 184 |
| AciI | CCGC | 1 cut(s) | 458 |
| AcsI | RAATTY | 3 cut(s) | 275, 506, 711 |
| AcuI | CTGAAG | 1 cut(s) | 618 |
| AfaI | GTAC | 2 cut(s) | 94, 1059 |
| AfeI | AGCGCT | 1 cut(s) | 887 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 323, 857, 1052 |
| AflII | CTTAAG | 1 cut(s) | 581 |
| AgsI | TTSAA | 2 cut(s) | 414, 472 |
| AjnI | CCWGG | 4 cut(s) | 229, 385, 403, 475 |
| AluBI | AGCT | 8 cut(s) | 155, 207, 658, 680, 765, 821, 1027, 1072 |
| AluI | AGCT | 8 cut(s) | 155, 207, 658, 680, 765, 821, 1027, 1072 |
| Alw21I | GWGCWC | 1 cut(s) | 946 |
| Alw26I | GTCTC | 2 cut(s) | 376, 566 |
| Alw44I | GTGCAC | 1 cut(s) | 942 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 782 |
| Ama87I | CYCGRG | 2 cut(s) | 377, 439 |
| Aor51HI | AGCGCT | 1 cut(s) | 887 |
| AoxI | GGCC | 3 cut(s) | 227, 445, 974 |
| ApaLI | GTGCAC | 1 cut(s) | 942 |
| ApeKI | GCWGC | 3 cut(s) | 288, 755, 821 |
| ApoI | RAATTY | 3 cut(s) | 275, 506, 711 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 712 |
| AspA2I | CCTAGG | 1 cut(s) | 1046 |
| AspLEI | GCGC | 4 cut(s) | 394, 410, 781, 888 |
| AsuC2I | CCSGG | 1 cut(s) | 672 |
| AsuHPI | GGTGA | 5 cut(s) | 434, 506, 686, 953, 1109 |
| AvaI | CYCGRG | 2 cut(s) | 377, 439 |
| AvrII | CCTAGG | 1 cut(s) | 1046 |
| BaeGI | GKGCMC | 3 cut(s) | 130, 596, 946 |
| BanI | GGYRCC | 1 cut(s) | 125 |
| BanII | GRGCYC | 1 cut(s) | 869 |
| BbsI | GAAGAC | 1 cut(s) | 926 |
| Bbv12I | GWGCWC | 1 cut(s) | 946 |
| BbvCI | CCTCAGC | 1 cut(s) | 882 |
| BbvI | GCAGC | 3 cut(s) | 275, 742, 808 |
| BccI | CCATC | 6 cut(s) | 117, 309, 314, 544, 966, 1012 |
| BciT130I | CCWGG | 4 cut(s) | 231, 387, 405, 477 |
| BcnI | CCSGG | 1 cut(s) | 672 |
| BcoDI | GTCTC | 2 cut(s) | 376, 566 |
| BfaI | CTAG | 3 cut(s) | 189, 813, 1047 |
| BfmI | CTRYAG | 2 cut(s) | 96, 783 |
| BfoI | RGCGCY | 4 cut(s) | 395, 411, 782, 889 |
| BfrI | CTTAAG | 1 cut(s) | 581 |
| BfuAI | ACCTGC | 2 cut(s) | 509, 782 |
| BglII | AGATCT | 1 cut(s) | 577 |
| BisI | GCNGC | 3 cut(s) | 289, 756, 822 |
| BlnI | CCTAGG | 1 cut(s) | 1046 |
| BlsI | GCNGC | 3 cut(s) | 290, 757, 823 |
| Bme1390I | CCNGG | 5 cut(s) | 231, 387, 405, 477, 672 |
| BmeT110I | CYCGRG | 2 cut(s) | 377, 439 |
| BmiI | GGNNCC | 3 cut(s) | 127, 315, 348 |
| BmrFI | CCNGG | 5 cut(s) | 231, 387, 405, 477, 672 |
| BmrI | ACTGGG | 1 cut(s) | 933 |
| BmuI | ACTGGG | 1 cut(s) | 933 |
| BpiI | GAAGAC | 1 cut(s) | 926 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1061, 1093 |
| BpmI | CTGGAG | 2 cut(s) | 408, 615 |
| Bpu10I | CCTNAGC | 1 cut(s) | 882 |
| BpuEI | CTTGAG | 1 cut(s) | 531 |
| BpuMI | CCSGG | 1 cut(s) | 672 |
| BsaAI | YACGTR | 1 cut(s) | 92 |
| BsaBI | GATNNNNATC | 1 cut(s) | 741 |
| BsaI | GGTCTC | 1 cut(s) | 376 |
| BsaJI | CCNNGG | 2 cut(s) | 476, 1046 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 323, 857, 1052 |
| Bse1I | ACTGG | 2 cut(s) | 709, 928 |
| Bse3DI | GCAATG | 2 cut(s) | 488, 716 |
| Bse8I | GATNNNNATC | 1 cut(s) | 741 |
| BseBI | CCWGG | 4 cut(s) | 231, 387, 405, 477 |
| BseDI | CCNNGG | 2 cut(s) | 476, 1046 |
| BseGI | GGATG | 2 cut(s) | 301, 525 |
| BseJI | GATNNNNATC | 1 cut(s) | 741 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 323, 857, 1052 |
| BseMI | GCAATG | 2 cut(s) | 488, 716 |
| BseMII | CTCAG | 3 cut(s) | 561, 891, 896 |
| BseNI | ACTGG | 2 cut(s) | 709, 928 |
| BseSI | GKGCMC | 3 cut(s) | 130, 596, 946 |
| BseXI | GCAGC | 3 cut(s) | 275, 742, 808 |
| BsgI | GTGCAG | 1 cut(s) | 753 |
| Bsh1236I | CGCG | 1 cut(s) | 184 |
| BshFI | GGCC | 3 cut(s) | 229, 447, 976 |
| BshNI | GGYRCC | 1 cut(s) | 125 |
| BsiHKAI | GWGCWC | 1 cut(s) | 946 |
| BsiHKCI | CYCGRG | 2 cut(s) | 377, 439 |
| BsiSI | CCGG | 1 cut(s) | 671 |
| BslFI | GGGAC | 3 cut(s) | 314, 355, 1099 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 323, 857, 1052 |
| BsmAI | GTCTC | 2 cut(s) | 376, 566 |
| BsmFI | GGGAC | 3 cut(s) | 314, 355, 1099 |
| BsnI | GGCC | 3 cut(s) | 229, 447, 976 |
| Bso31I | GGTCTC | 1 cut(s) | 376 |
| BsoBI | CYCGRG | 2 cut(s) | 377, 439 |
| Bsp1286I | GDGCHC | 4 cut(s) | 130, 596, 869, 946 |
| Bsp143I | GATC | 1 cut(s) | 577 |
| BspACI | CCGC | 1 cut(s) | 458 |
| BspANI | GGCC | 3 cut(s) | 229, 447, 976 |
| BspCNI | CTCAG | 3 cut(s) | 562, 892, 895 |
| BspFNI | CGCG | 1 cut(s) | 184 |
| BspLI | GGNNCC | 3 cut(s) | 127, 315, 348 |
| BspMAI | CTGCAG | 1 cut(s) | 787 |
| BspMI | ACCTGC | 2 cut(s) | 509, 782 |
| BspT107I | GGYRCC | 1 cut(s) | 125 |
| BspTI | CTTAAG | 1 cut(s) | 581 |
| BspTNI | GGTCTC | 1 cut(s) | 376 |
| BsrDI | GCAATG | 2 cut(s) | 488, 716 |
| BsrI | ACTGG | 2 cut(s) | 709, 928 |
| BssECI | CCNNGG | 2 cut(s) | 476, 1046 |
| BssMI | GATC | 1 cut(s) | 577 |
| BssT1I | CCWWGG | 1 cut(s) | 1046 |
| Bst2UI | CCWGG | 4 cut(s) | 231, 387, 405, 477 |
| Bst4CI | ACNGT | 2 cut(s) | 856, 874 |
| BstAFI | CTTAAG | 1 cut(s) | 581 |
| BstBAI | YACGTR | 1 cut(s) | 92 |
| BstC8I | GCNNGC | 5 cut(s) | 209, 783, 865, 978, 1035 |
| BstDEI | CTNAG | 3 cut(s) | 570, 882, 900 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1050 |
| BstF5I | GGATG | 2 cut(s) | 301, 525 |
| BstFNI | CGCG | 1 cut(s) | 184 |
| BstH2I | RGCGCY | 4 cut(s) | 395, 411, 782, 889 |
| BstHHI | GCGC | 4 cut(s) | 394, 410, 781, 888 |
| BstKTI | GATC | 1 cut(s) | 580 |
| BstMAI | GTCTC | 2 cut(s) | 376, 566 |
| BstMBI | GATC | 1 cut(s) | 577 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 818 |
| BstNI | CCWGG | 4 cut(s) | 231, 387, 405, 477 |
| BstSCI | CCNGG | 5 cut(s) | 229, 385, 403, 475, 670 |
| BstSFI | CTRYAG | 2 cut(s) | 96, 783 |
| BstSLI | GKGCMC | 3 cut(s) | 130, 596, 946 |
| BstSNI | TACGTA | 1 cut(s) | 92 |
| BstUI | CGCG | 1 cut(s) | 184 |
| BstV1I | GCAGC | 3 cut(s) | 275, 742, 808 |
| BstV2I | GAAGAC | 1 cut(s) | 926 |
| BstX2I | RGATCY | 1 cut(s) | 577 |
| BstYI | RGATCY | 1 cut(s) | 577 |
| BsuRI | GGCC | 3 cut(s) | 229, 447, 976 |
| BtsCI | GGATG | 2 cut(s) | 301, 525 |
| BtsI | GCAGTG | 1 cut(s) | 987 |
| BtsIMutI | CAGTG | 2 cut(s) | 594, 987 |
| BveI | ACCTGC | 2 cut(s) | 509, 782 |
| Cac8I | GCNNGC | 5 cut(s) | 209, 783, 865, 978, 1035 |
| CaiI | CAGNNNCTG | 1 cut(s) | 782 |
| CfoI | GCGC | 4 cut(s) | 394, 410, 781, 888 |
| Csp6I | GTAC | 2 cut(s) | 93, 1058 |
| CviQI | GTAC | 2 cut(s) | 93, 1058 |
| DdeI | CTNAG | 3 cut(s) | 570, 882, 900 |
| DpnI | GATC | 1 cut(s) | 579 |
| DpnII | GATC | 1 cut(s) | 577 |
| Eco105I | TACGTA | 1 cut(s) | 92 |
| Eco130I | CCWWGG | 1 cut(s) | 1046 |
| Eco147I | AGGCCT | 1 cut(s) | 447 |
| Eco24I | GRGCYC | 1 cut(s) | 869 |
| Eco31I | GGTCTC | 1 cut(s) | 376 |
| Eco32I | GATATC | 1 cut(s) | 739 |
| Eco47III | AGCGCT | 1 cut(s) | 887 |
| Eco57I | CTGAAG | 1 cut(s) | 618 |
| Eco88I | CYCGRG | 2 cut(s) | 377, 439 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1050 |
| EcoRII | CCWGG | 4 cut(s) | 229, 385, 403, 475 |
| EcoRV | GATATC | 1 cut(s) | 739 |
| EcoT14I | CCWWGG | 1 cut(s) | 1046 |
| EcoT38I | GRGCYC | 1 cut(s) | 869 |
| ErhI | CCWWGG | 1 cut(s) | 1046 |
| FaqI | GGGAC | 3 cut(s) | 314, 355, 1099 |
| FauI | CCCGC | 1 cut(s) | 465 |
| FblI | GTMKAC | 1 cut(s) | 85 |
| Fnu4HI | GCNGC | 3 cut(s) | 289, 756, 822 |
| FokI | GGATG | 2 cut(s) | 288, 512 |
| FriOI | GRGCYC | 1 cut(s) | 869 |
| Fsp4HI | GCNGC | 3 cut(s) | 289, 756, 822 |
| FspBI | CTAG | 3 cut(s) | 189, 813, 1047 |
| GlaI | GCGC | 4 cut(s) | 393, 409, 780, 887 |
| GluI | GCNGC | 3 cut(s) | 289, 756, 822 |
| GsuI | CTGGAG | 2 cut(s) | 408, 615 |
| HaeII | RGCGCY | 4 cut(s) | 395, 411, 782, 889 |
| HaeIII | GGCC | 3 cut(s) | 229, 447, 976 |
| HapII | CCGG | 1 cut(s) | 671 |
| HhaI | GCGC | 4 cut(s) | 394, 410, 781, 888 |
| Hin6I | GCGC | 4 cut(s) | 392, 408, 779, 886 |
| HinP1I | GCGC | 4 cut(s) | 392, 408, 779, 886 |
| HincII | GTYRAC | 1 cut(s) | 993 |
| HindII | GTYRAC | 1 cut(s) | 993 |
| HindIII | AAGCTT | 2 cut(s) | 153, 205 |
| HinfI | GANTC | 5 cut(s) | 192, 327, 368, 620, 954 |
| HpaII | CCGG | 1 cut(s) | 671 |
| HphI | GGTGA | 5 cut(s) | 434, 506, 686, 953, 1109 |
| Hpy166II | GTNNAC | 5 cut(s) | 86, 250, 944, 993, 1117 |
| Hpy188I | TCNGA | 2 cut(s) | 138, 453 |
| Hpy188III | TCNNGA | 6 cut(s) | 196, 317, 377, 529, 548, 617 |
| Hpy8I | GTNNAC | 5 cut(s) | 86, 250, 944, 993, 1117 |
| HpyAV | CCTTC | 3 cut(s) | 383, 458, 835 |
| HpyCH4III | ACNGT | 2 cut(s) | 856, 874 |
| HpyCH4IV | ACGT | 1 cut(s) | 91 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 818 |
| HpyF3I | CTNAG | 3 cut(s) | 570, 882, 900 |
| HpySE526I | ACGT | 1 cut(s) | 91 |
| HspAI | GCGC | 4 cut(s) | 392, 408, 779, 886 |
| Kzo9I | GATC | 1 cut(s) | 577 |
| LmnI | GCTCC | 4 cut(s) | 364, 389, 860, 1069 |
| Lsp1109I | GCAGC | 3 cut(s) | 275, 742, 808 |
| MaeI | CTAG | 3 cut(s) | 189, 813, 1047 |
| MaeII | ACGT | 1 cut(s) | 91 |
| MaeIII | GTNAC | 1 cut(s) | 44 |
| MalI | GATC | 1 cut(s) | 579 |
| MboI | GATC | 1 cut(s) | 577 |
| MboII | GAAGA | 2 cut(s) | 720, 931 |
| MflI | RGATCY | 1 cut(s) | 577 |
| MhlI | GDGCHC | 4 cut(s) | 130, 596, 869, 946 |
| MluCI | AATT | 4 cut(s) | 15, 275, 506, 711 |
| MlyI | GAGTC | 2 cut(s) | 336, 377 |
| MroXI | GAANNNNTTC | 1 cut(s) | 712 |
| MseI | TTAA | 4 cut(s) | 510, 582, 798, 1132 |
| MspA1I | CMGCKG | 1 cut(s) | 821 |
| MspCI | CTTAAG | 1 cut(s) | 581 |
| MspI | CCGG | 1 cut(s) | 671 |
| MspR9I | CCNGG | 5 cut(s) | 231, 387, 405, 477, 672 |
| MvaI | CCWGG | 4 cut(s) | 231, 387, 405, 477 |
| MvnI | CGCG | 1 cut(s) | 184 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 818 |
| NciI | CCSGG | 1 cut(s) | 672 |
| NdeII | GATC | 1 cut(s) | 577 |
| NlaIV | GGNNCC | 3 cut(s) | 127, 315, 348 |
| PceI | AGGCCT | 1 cut(s) | 447 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 860 |
| PdmI | GAANNNNTTC | 1 cut(s) | 712 |
| PfeI | GAWTC | 3 cut(s) | 192, 620, 954 |
| PkrI | GCNGC | 3 cut(s) | 290, 757, 823 |
| PleI | GAGTC | 2 cut(s) | 335, 376 |
| PpsI | GAGTC | 2 cut(s) | 335, 376 |
| Ppu21I | YACGTR | 1 cut(s) | 92 |
| Psp6I | CCWGG | 4 cut(s) | 229, 385, 403, 475 |
| PspGI | CCWGG | 4 cut(s) | 229, 385, 403, 475 |
| PspN4I | GGNNCC | 3 cut(s) | 127, 315, 348 |
| PstI | CTGCAG | 1 cut(s) | 787 |
| PstNI | CAGNNNCTG | 1 cut(s) | 782 |
| PsuI | RGATCY | 1 cut(s) | 577 |
| PvuII | CAGCTG | 1 cut(s) | 821 |
| RsaI | GTAC | 2 cut(s) | 94, 1059 |
| RsaNI | GTAC | 2 cut(s) | 93, 1058 |
| SaqAI | TTAA | 4 cut(s) | 510, 582, 798, 1132 |
| SatI | GCNGC | 3 cut(s) | 289, 756, 822 |
| Sau3AI | GATC | 1 cut(s) | 577 |
| SchI | GAGTC | 2 cut(s) | 336, 377 |
| ScrFI | CCNGG | 5 cut(s) | 231, 387, 405, 477, 672 |
| SduI | GDGCHC | 4 cut(s) | 130, 596, 869, 946 |
| SfcI | CTRYAG | 2 cut(s) | 96, 783 |
| SmlI | CTYRAG | 2 cut(s) | 546, 581 |
| SmoI | CTYRAG | 2 cut(s) | 546, 581 |
| SnaBI | TACGTA | 1 cut(s) | 92 |
| Sse9I | AATT | 4 cut(s) | 15, 275, 506, 711 |
| SseBI | AGGCCT | 1 cut(s) | 447 |
| SsiI | CCGC | 1 cut(s) | 458 |
| SspMI | CTAG | 3 cut(s) | 189, 813, 1047 |
| StuI | AGGCCT | 1 cut(s) | 447 |
| StyD4I | CCNGG | 5 cut(s) | 229, 385, 403, 475, 670 |
| StyI | CCWWGG | 1 cut(s) | 1046 |
| TaaI | ACNGT | 2 cut(s) | 856, 874 |
| TaiI | ACGT | 1 cut(s) | 94 |
| TaqI | TCGA | 2 cut(s) | 164, 195 |
| TasI | AATT | 4 cut(s) | 15, 275, 506, 711 |
| TfiI | GAWTC | 3 cut(s) | 192, 620, 954 |
| Tru1I | TTAA | 4 cut(s) | 510, 582, 798, 1132 |
| Tru9I | TTAA | 4 cut(s) | 510, 582, 798, 1132 |
| TscAI | CASTG | 2 cut(s) | 601, 987 |
| TseI | GCWGC | 3 cut(s) | 288, 755, 821 |
| TspDTI | ATGAA | 3 cut(s) | 612, 705, 932 |
| TspGWI | ACGGA | 2 cut(s) | 602, 678 |
| TspRI | CASTG | 2 cut(s) | 601, 987 |
| Vha464I | CTTAAG | 1 cut(s) | 581 |
| VneI | GTGCAC | 1 cut(s) | 942 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1050 |
| XapI | RAATTY | 3 cut(s) | 275, 506, 711 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 137 |
| XmaJI | CCTAGG | 1 cut(s) | 1046 |
| XmiI | GTMKAC | 1 cut(s) | 85 |
| XmnI | GAANNNNTTC | 1 cut(s) | 712 |
| XspI | CTAG | 3 cut(s) | 189, 813, 1047 |