RchiOBHm_Chr5g0022611

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
16685324 .. 16690415
5092 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30255

Sequence Viewer

Length: 1134 bp
ATGTTCTTACCCCAAATTACTTTTACGATATATATACTATATGGTAACATATACATTTCCTCTGGTTTTCTTGTATATACTTGTCTACTACGTACTATAGCACTCTACCATCAGGCTCTTTTGGGTGCCCATAATCCGATTGGGCAAATGGAAGCTTGGTATTCGACAAATCCTTTAGCAACGCGACCTAGATTCGAGAATACAAGCTTGCCTATTTATCCACAGAGGCCAGGAGAGAAAGATTGTGTCCACTATATGCAAACAAGAACCTGTAAATTTGGAGAGGGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGATGGTGGAGTCCCAGATTGGAAAGAGGTTCCACTTGTTGCTCCAAGTGAGTCCCTTCCCGAGAGACCTGGAGCGCCCGATTGTCCAGGCGCTTCAAAAAATGGTGATGTTATGCCTTACCCGAGAGGCCTTCTGAACCCGCATTTCTACTTGAAACCTGGGCAATGCAAGTATGGTGCAACCTGCAAATTTAATCACCCAAAAGACATCCAGATACCATCAGCCACTCAAGAGAATAAATCTGGCGAAACTGAGACAGATCTTAAGACGGAGGGCACTGAAGTTGCTGTGAAGCCTCTTGATTCATTCACTCCAGCACTATTGTATAACTCCAAAGAGCTTCCTGTAAGACCGGGTGAAGCTGATTGTCCGTTCTACCTGAAAACTGGAAGAATTTCATTGCCAAGTTTTTGTGCAGATATCAATCCACCTGTTGCTGCAATCAGCTATCCTCTTTCAGCGCCTGCAGTTGCAGGTTTTAACATAGGAGTTGCTAGTCCAGCTGCCTTCACTTATCAAACTTTGGCACAACCAACGGTGGGAGCGAGCCCTACTGTTTATCCTCAGCGCTTTGGACAGGCTGAGTGTGAATACTATATGAAGACTGGGGAATGTAAGTATGGTGCACAATGCAGATTCCATCACCCGATTGATAGGCCAGCAGTGGCGTTGTCAACAACAAAGCCATCTCAACAAGAAAATGTGAAGCTAACGCTTGCTGGACTACCTAGGAGAGGGGTACGAATGGTGGAGCTATTCTCTGTTGGGACTATCCCAAGTCTTTTTATCAGTAGGGTTCACCTGTCCTTGTTTTAA

Protein Analysis

377

Amino Acids

41.53

Weight (kDa)

8.18

Isoelectric Point (pI)

42.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 78 - 102 2.8e-06 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 297 - 322 7.5e-11 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 509, 782
AccB1I GGYRCC 1 cut(s) 125
AccI GTMKAC 1 cut(s) 85
AccII CGCG 1 cut(s) 184
AciI CCGC 1 cut(s) 458
AcsI RAATTY 3 cut(s) 275, 506, 711
AcuI CTGAAG 1 cut(s) 618
AfaI GTAC 2 cut(s) 94, 1059
AfeI AGCGCT 1 cut(s) 887
AfiI CCNNNNNNNGG 3 cut(s) 323, 857, 1052
AflII CTTAAG 1 cut(s) 581
AgsI TTSAA 2 cut(s) 414, 472
AjnI CCWGG 4 cut(s) 229, 385, 403, 475
AluBI AGCT 8 cut(s) 155, 207, 658, 680, 765, 821, 1027, 1072
AluI AGCT 8 cut(s) 155, 207, 658, 680, 765, 821, 1027, 1072
Alw21I GWGCWC 1 cut(s) 946
Alw26I GTCTC 2 cut(s) 376, 566
Alw44I GTGCAC 1 cut(s) 942
AlwNI CAGNNNCTG 1 cut(s) 782
Ama87I CYCGRG 2 cut(s) 377, 439
Aor51HI AGCGCT 1 cut(s) 887
AoxI GGCC 3 cut(s) 227, 445, 974
ApaLI GTGCAC 1 cut(s) 942
ApeKI GCWGC 3 cut(s) 288, 755, 821
ApoI RAATTY 3 cut(s) 275, 506, 711
Asp700I GAANNNNTTC 1 cut(s) 712
AspA2I CCTAGG 1 cut(s) 1046
AspLEI GCGC 4 cut(s) 394, 410, 781, 888
AsuC2I CCSGG 1 cut(s) 672
AsuHPI GGTGA 5 cut(s) 434, 506, 686, 953, 1109
AvaI CYCGRG 2 cut(s) 377, 439
AvrII CCTAGG 1 cut(s) 1046
BaeGI GKGCMC 3 cut(s) 130, 596, 946
BanI GGYRCC 1 cut(s) 125
BanII GRGCYC 1 cut(s) 869
BbsI GAAGAC 1 cut(s) 926
Bbv12I GWGCWC 1 cut(s) 946
BbvCI CCTCAGC 1 cut(s) 882
BbvI GCAGC 3 cut(s) 275, 742, 808
BccI CCATC 6 cut(s) 117, 309, 314, 544, 966, 1012
BciT130I CCWGG 4 cut(s) 231, 387, 405, 477
BcnI CCSGG 1 cut(s) 672
BcoDI GTCTC 2 cut(s) 376, 566
BfaI CTAG 3 cut(s) 189, 813, 1047
BfmI CTRYAG 2 cut(s) 96, 783
BfoI RGCGCY 4 cut(s) 395, 411, 782, 889
BfrI CTTAAG 1 cut(s) 581
BfuAI ACCTGC 2 cut(s) 509, 782
BglII AGATCT 1 cut(s) 577
BisI GCNGC 3 cut(s) 289, 756, 822
BlnI CCTAGG 1 cut(s) 1046
BlsI GCNGC 3 cut(s) 290, 757, 823
Bme1390I CCNGG 5 cut(s) 231, 387, 405, 477, 672
BmeT110I CYCGRG 2 cut(s) 377, 439
BmiI GGNNCC 3 cut(s) 127, 315, 348
BmrFI CCNGG 5 cut(s) 231, 387, 405, 477, 672
BmrI ACTGGG 1 cut(s) 933
BmuI ACTGGG 1 cut(s) 933
BpiI GAAGAC 1 cut(s) 926
BplI GAGNNNNNCTC 2 cut(s) 1061, 1093
BpmI CTGGAG 2 cut(s) 408, 615
Bpu10I CCTNAGC 1 cut(s) 882
BpuEI CTTGAG 1 cut(s) 531
BpuMI CCSGG 1 cut(s) 672
BsaAI YACGTR 1 cut(s) 92
BsaBI GATNNNNATC 1 cut(s) 741
BsaI GGTCTC 1 cut(s) 376
BsaJI CCNNGG 2 cut(s) 476, 1046
Bsc4I CCNNNNNNNGG 3 cut(s) 323, 857, 1052
Bse1I ACTGG 2 cut(s) 709, 928
Bse3DI GCAATG 2 cut(s) 488, 716
Bse8I GATNNNNATC 1 cut(s) 741
BseBI CCWGG 4 cut(s) 231, 387, 405, 477
BseDI CCNNGG 2 cut(s) 476, 1046
BseGI GGATG 2 cut(s) 301, 525
BseJI GATNNNNATC 1 cut(s) 741
BseLI CCNNNNNNNGG 3 cut(s) 323, 857, 1052
BseMI GCAATG 2 cut(s) 488, 716
BseMII CTCAG 3 cut(s) 561, 891, 896
BseNI ACTGG 2 cut(s) 709, 928
BseSI GKGCMC 3 cut(s) 130, 596, 946
BseXI GCAGC 3 cut(s) 275, 742, 808
BsgI GTGCAG 1 cut(s) 753
Bsh1236I CGCG 1 cut(s) 184
BshFI GGCC 3 cut(s) 229, 447, 976
BshNI GGYRCC 1 cut(s) 125
BsiHKAI GWGCWC 1 cut(s) 946
BsiHKCI CYCGRG 2 cut(s) 377, 439
BsiSI CCGG 1 cut(s) 671
BslFI GGGAC 3 cut(s) 314, 355, 1099
BslI CCNNNNNNNGG 3 cut(s) 323, 857, 1052
BsmAI GTCTC 2 cut(s) 376, 566
BsmFI GGGAC 3 cut(s) 314, 355, 1099
BsnI GGCC 3 cut(s) 229, 447, 976
Bso31I GGTCTC 1 cut(s) 376
BsoBI CYCGRG 2 cut(s) 377, 439
Bsp1286I GDGCHC 4 cut(s) 130, 596, 869, 946
Bsp143I GATC 1 cut(s) 577
BspACI CCGC 1 cut(s) 458
BspANI GGCC 3 cut(s) 229, 447, 976
BspCNI CTCAG 3 cut(s) 562, 892, 895
BspFNI CGCG 1 cut(s) 184
BspLI GGNNCC 3 cut(s) 127, 315, 348
BspMAI CTGCAG 1 cut(s) 787
BspMI ACCTGC 2 cut(s) 509, 782
BspT107I GGYRCC 1 cut(s) 125
BspTI CTTAAG 1 cut(s) 581
BspTNI GGTCTC 1 cut(s) 376
BsrDI GCAATG 2 cut(s) 488, 716
BsrI ACTGG 2 cut(s) 709, 928
BssECI CCNNGG 2 cut(s) 476, 1046
BssMI GATC 1 cut(s) 577
BssT1I CCWWGG 1 cut(s) 1046
Bst2UI CCWGG 4 cut(s) 231, 387, 405, 477
Bst4CI ACNGT 2 cut(s) 856, 874
BstAFI CTTAAG 1 cut(s) 581
BstBAI YACGTR 1 cut(s) 92
BstC8I GCNNGC 5 cut(s) 209, 783, 865, 978, 1035
BstDEI CTNAG 3 cut(s) 570, 882, 900
BstENI CCTNNNNNAGG 1 cut(s) 1050
BstF5I GGATG 2 cut(s) 301, 525
BstFNI CGCG 1 cut(s) 184
BstH2I RGCGCY 4 cut(s) 395, 411, 782, 889
BstHHI GCGC 4 cut(s) 394, 410, 781, 888
BstKTI GATC 1 cut(s) 580
BstMAI GTCTC 2 cut(s) 376, 566
BstMBI GATC 1 cut(s) 577
BstMWI GCNNNNNNNGC 1 cut(s) 818
BstNI CCWGG 4 cut(s) 231, 387, 405, 477
BstSCI CCNGG 5 cut(s) 229, 385, 403, 475, 670
BstSFI CTRYAG 2 cut(s) 96, 783
BstSLI GKGCMC 3 cut(s) 130, 596, 946
BstSNI TACGTA 1 cut(s) 92
BstUI CGCG 1 cut(s) 184
BstV1I GCAGC 3 cut(s) 275, 742, 808
BstV2I GAAGAC 1 cut(s) 926
BstX2I RGATCY 1 cut(s) 577
BstYI RGATCY 1 cut(s) 577
BsuRI GGCC 3 cut(s) 229, 447, 976
BtsCI GGATG 2 cut(s) 301, 525
BtsI GCAGTG 1 cut(s) 987
BtsIMutI CAGTG 2 cut(s) 594, 987
BveI ACCTGC 2 cut(s) 509, 782
Cac8I GCNNGC 5 cut(s) 209, 783, 865, 978, 1035
CaiI CAGNNNCTG 1 cut(s) 782
CfoI GCGC 4 cut(s) 394, 410, 781, 888
Csp6I GTAC 2 cut(s) 93, 1058
CviQI GTAC 2 cut(s) 93, 1058
DdeI CTNAG 3 cut(s) 570, 882, 900
DpnI GATC 1 cut(s) 579
DpnII GATC 1 cut(s) 577
Eco105I TACGTA 1 cut(s) 92
Eco130I CCWWGG 1 cut(s) 1046
Eco147I AGGCCT 1 cut(s) 447
Eco24I GRGCYC 1 cut(s) 869
Eco31I GGTCTC 1 cut(s) 376
Eco32I GATATC 1 cut(s) 739
Eco47III AGCGCT 1 cut(s) 887
Eco57I CTGAAG 1 cut(s) 618
Eco88I CYCGRG 2 cut(s) 377, 439
EcoNI CCTNNNNNAGG 1 cut(s) 1050
EcoRII CCWGG 4 cut(s) 229, 385, 403, 475
EcoRV GATATC 1 cut(s) 739
EcoT14I CCWWGG 1 cut(s) 1046
EcoT38I GRGCYC 1 cut(s) 869
ErhI CCWWGG 1 cut(s) 1046
FaqI GGGAC 3 cut(s) 314, 355, 1099
FauI CCCGC 1 cut(s) 465
FblI GTMKAC 1 cut(s) 85
Fnu4HI GCNGC 3 cut(s) 289, 756, 822
FokI GGATG 2 cut(s) 288, 512
FriOI GRGCYC 1 cut(s) 869
Fsp4HI GCNGC 3 cut(s) 289, 756, 822
FspBI CTAG 3 cut(s) 189, 813, 1047
GlaI GCGC 4 cut(s) 393, 409, 780, 887
GluI GCNGC 3 cut(s) 289, 756, 822
GsuI CTGGAG 2 cut(s) 408, 615
HaeII RGCGCY 4 cut(s) 395, 411, 782, 889
HaeIII GGCC 3 cut(s) 229, 447, 976
HapII CCGG 1 cut(s) 671
HhaI GCGC 4 cut(s) 394, 410, 781, 888
Hin6I GCGC 4 cut(s) 392, 408, 779, 886
HinP1I GCGC 4 cut(s) 392, 408, 779, 886
HincII GTYRAC 1 cut(s) 993
HindII GTYRAC 1 cut(s) 993
HindIII AAGCTT 2 cut(s) 153, 205
HinfI GANTC 5 cut(s) 192, 327, 368, 620, 954
HpaII CCGG 1 cut(s) 671
HphI GGTGA 5 cut(s) 434, 506, 686, 953, 1109
Hpy166II GTNNAC 5 cut(s) 86, 250, 944, 993, 1117
Hpy188I TCNGA 2 cut(s) 138, 453
Hpy188III TCNNGA 6 cut(s) 196, 317, 377, 529, 548, 617
Hpy8I GTNNAC 5 cut(s) 86, 250, 944, 993, 1117
HpyAV CCTTC 3 cut(s) 383, 458, 835
HpyCH4III ACNGT 2 cut(s) 856, 874
HpyCH4IV ACGT 1 cut(s) 91
HpyF10VI GCNNNNNNNGC 1 cut(s) 818
HpyF3I CTNAG 3 cut(s) 570, 882, 900
HpySE526I ACGT 1 cut(s) 91
HspAI GCGC 4 cut(s) 392, 408, 779, 886
Kzo9I GATC 1 cut(s) 577
LmnI GCTCC 4 cut(s) 364, 389, 860, 1069
Lsp1109I GCAGC 3 cut(s) 275, 742, 808
MaeI CTAG 3 cut(s) 189, 813, 1047
MaeII ACGT 1 cut(s) 91
MaeIII GTNAC 1 cut(s) 44
MalI GATC 1 cut(s) 579
MboI GATC 1 cut(s) 577
MboII GAAGA 2 cut(s) 720, 931
MflI RGATCY 1 cut(s) 577
MhlI GDGCHC 4 cut(s) 130, 596, 869, 946
MluCI AATT 4 cut(s) 15, 275, 506, 711
MlyI GAGTC 2 cut(s) 336, 377
MroXI GAANNNNTTC 1 cut(s) 712
MseI TTAA 4 cut(s) 510, 582, 798, 1132
MspA1I CMGCKG 1 cut(s) 821
MspCI CTTAAG 1 cut(s) 581
MspI CCGG 1 cut(s) 671
MspR9I CCNGG 5 cut(s) 231, 387, 405, 477, 672
MvaI CCWGG 4 cut(s) 231, 387, 405, 477
MvnI CGCG 1 cut(s) 184
MwoI GCNNNNNNNGC 1 cut(s) 818
NciI CCSGG 1 cut(s) 672
NdeII GATC 1 cut(s) 577
NlaIV GGNNCC 3 cut(s) 127, 315, 348
PceI AGGCCT 1 cut(s) 447
PcsI WCGNNNNNNNCGW 1 cut(s) 860
PdmI GAANNNNTTC 1 cut(s) 712
PfeI GAWTC 3 cut(s) 192, 620, 954
PkrI GCNGC 3 cut(s) 290, 757, 823
PleI GAGTC 2 cut(s) 335, 376
PpsI GAGTC 2 cut(s) 335, 376
Ppu21I YACGTR 1 cut(s) 92
Psp6I CCWGG 4 cut(s) 229, 385, 403, 475
PspGI CCWGG 4 cut(s) 229, 385, 403, 475
PspN4I GGNNCC 3 cut(s) 127, 315, 348
PstI CTGCAG 1 cut(s) 787
PstNI CAGNNNCTG 1 cut(s) 782
PsuI RGATCY 1 cut(s) 577
PvuII CAGCTG 1 cut(s) 821
RsaI GTAC 2 cut(s) 94, 1059
RsaNI GTAC 2 cut(s) 93, 1058
SaqAI TTAA 4 cut(s) 510, 582, 798, 1132
SatI GCNGC 3 cut(s) 289, 756, 822
Sau3AI GATC 1 cut(s) 577
SchI GAGTC 2 cut(s) 336, 377
ScrFI CCNGG 5 cut(s) 231, 387, 405, 477, 672
SduI GDGCHC 4 cut(s) 130, 596, 869, 946
SfcI CTRYAG 2 cut(s) 96, 783
SmlI CTYRAG 2 cut(s) 546, 581
SmoI CTYRAG 2 cut(s) 546, 581
SnaBI TACGTA 1 cut(s) 92
Sse9I AATT 4 cut(s) 15, 275, 506, 711
SseBI AGGCCT 1 cut(s) 447
SsiI CCGC 1 cut(s) 458
SspMI CTAG 3 cut(s) 189, 813, 1047
StuI AGGCCT 1 cut(s) 447
StyD4I CCNGG 5 cut(s) 229, 385, 403, 475, 670
StyI CCWWGG 1 cut(s) 1046
TaaI ACNGT 2 cut(s) 856, 874
TaiI ACGT 1 cut(s) 94
TaqI TCGA 2 cut(s) 164, 195
TasI AATT 4 cut(s) 15, 275, 506, 711
TfiI GAWTC 3 cut(s) 192, 620, 954
Tru1I TTAA 4 cut(s) 510, 582, 798, 1132
Tru9I TTAA 4 cut(s) 510, 582, 798, 1132
TscAI CASTG 2 cut(s) 601, 987
TseI GCWGC 3 cut(s) 288, 755, 821
TspDTI ATGAA 3 cut(s) 612, 705, 932
TspGWI ACGGA 2 cut(s) 602, 678
TspRI CASTG 2 cut(s) 601, 987
Vha464I CTTAAG 1 cut(s) 581
VneI GTGCAC 1 cut(s) 942
XagI CCTNNNNNAGG 1 cut(s) 1050
XapI RAATTY 3 cut(s) 275, 506, 711
XcmI CCANNNNNNNNNTGG 1 cut(s) 137
XmaJI CCTAGG 1 cut(s) 1046
XmiI GTMKAC 1 cut(s) 85
XmnI GAANNNNTTC 1 cut(s) 712
XspI CTAG 3 cut(s) 189, 813, 1047
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.