Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000820

Physical Location & Seq

Genomic Coordinates Reverse (-)

16701122 .. 16742408

Gene Structure 41287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG161100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2124 bp

ATGGCGAGCCATCTCTTCACCTACGGCGTCGCCCAATCAGCTCCAGCTCCCAATCCTGCTCTCTCCACCGTCTACACCCCCCTCTCCCTAGCTCAATCCTGCCTCTCCGACCCGGCCCACCGCTACCTTTCCAGGTCGGACCCTCTCTCCACCTCCTCCATGTACCTCTCCGGCACCGACGGCCTCGGCGCTTACTCCGACGTCGCCAGAGCCACGTCGTATATGATGTCATCCTGGCCCGCCGCGGATGCAGAACCCGGCCCGCCCGGCTTCAAACGCACCTCTGAAGCACTCTACCATCAGGCTCTTTTGGGTGCCCATAATCCGATTGGGCAAATGGAAGCTTGGTATTCGACAAATCCTTTAGCAACGCGACCTAGATTCGAGAATACAAGCTTGCCTATTTATCCACAGAGGCCAGGAGAGAAAGATTGTGTCCACTATATGCAAACAAGAACCTGTAAATTTGGAGAGGGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGATGGTGGAGTCCCAGATTGGAAAGAGGTTCCACTTGTTGCTCCAAGTGAGTCCCTTCCCGAGAGACCTGGAGCGCCCGATTGTCCATACTTTTTAAAAACTCAAAGATGCAAGTTTAATCATCCAAAGGACACACTGGCCACTGCGGGCGCTTCAAAAAATGGTGATGTTATGCCTTACCCGAGAGGCCTTCTGAACCCGCATTTCTACTTGAAACCTGGGCAATGCAAGTATGGTGCAACCTGCAAATTTAATCACCCAAAAGACATCCAGATACCATCAGCCACTCAAGAGAATAAATCTGGCGAAACTGAGACAGATCTTAAGACGGAGGGCACTGAAGTTGCTGTGAAGCCTCTTGATTCATTCACTCCAGCACTATTGTATAACTCCAAAGAGCTTCCTGTAAGACCGGGTGAAGCTGATTGTCCGTTCTACCTGAAAACTGGAAGAATTTCATTGCCAAGTTTTTGTGCAGATATCAATCCACCTGTTGCTGCAATCAGCTATCCTCTTTCAGCGCCTGCAGTTGCAGGTTTTAACATAGGAGTTGCTAGTCCAGCTGCCTTCACTTATCAAACTTTGGCACAACCAACGGTGGGAGCGAGCCCTACTGTTTATCCTCAGCGCTTTGGACAGGCTGAGTGTGAATACTATATGAAGACTGGGGAATGTAAGTATGGTGCACAATGCAGATTCCATCACCCGATTGATAGGCCAGCAGTGGCGTTGTCAACAACAAAGCCATCTCAACAAGAAAATGTGAAGCTAACGCTTGCTGGACTACCTAGGAGAGGGGTACGAATGGTGGAGCTATTCTCTGTTGGGACTATCCCAAAACATGACATTACCTTACATTGCCCAATCCCGGAGATTGACTTTGTACCGCCACCACCACGTGCTCCTCCAACCCCGGAAAAGCAAGAGAGGGTTCGGATTTGCAGACGCTGCTCCGGAGATTCTGGAAGAGAGGCGGCGCCGTACTGGTCCTCCGACGACAAGGTCCGGGCCAGGATGCAGCTGGGAGGAGTCTTCCTTCTCACTCTCGCCACCACCGGGATCAGCGTCGGCTTCAATTTTCTGGGTCGGGACTTCTACAATGTCCTTGCCAGACCAAGAGCAGTTCATGAAGCAACTGCTTTACTACCTGGGTGCCTTTGCTGGTGGAATTCCGGTGAGGACCAATTGCTGCTCTTTCGCTTAGATTTTTGTGTTGCGGAATTATGCAAGAGAAACTCTTTCTTTGAGGTGGAGATCTTGGATGGAGCTGATCAGTTTCTTTATTGGAAGGATAAGTTATCTGGTTTGGTGACATTAAACACAAGAGAAAAAGGAAGCAGATTTTCACAAGGACCAAGAGCAATTCATGAAGCAACTGCTTTACTACCTGGGTGCCTTTGCTGGTGGAATTCCGGTGAGGACCAATTGCTGCTCTTTCGCTTAGTATTATATGAAGACTGGAGAATGAGAGAGGGTGCCGTTATCTATGTGTATTACCTTAAAACCGGCGCATGCAAGTATGGTGCAACCTGCAGATTTGACCACCCACCTCCTGGCGAAGTTGTAGCAATGGCAGCTTCACAAGGAAAATCTGATTCTACCGGAGGGAAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001709 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0032502 GO:0034248 GO:0034249 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045165 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048869 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1903311 GO:1903313 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

707

Amino Acids

77.71

Weight (kDa)

7.91

Isoelectric Point (pI)

39.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	141 - 165	6e-06	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH	PF00642	380 - 405	1.6e-10	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH	PF00642	667 - 686	3.1e-07	Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12680
fragaria_vesca	FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640
malus_domestica	MD03G1280400.v1.1 MD06G1158700.v1.1 MD06G1158900.v1.1 MD06G1159100.v1.1 MD10G1219700.v1.1
prunus_persica	Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.7G013500_v2.0.a1 Prupe.8G067100_v2.0.a1
pyrus_communis	pycom06g14160 pycom06g14170 pycom10g18590
rosa_chinensis	RchiOBHm_Chr5g0022551 RchiOBHm_Chr5g0022581 RchiOBHm_Chr5g0022611 RchiOBHm_Chr5g0022711 RchiOBHm_Chr5g0022731 RchiOBHm_Chr5g0022751 RchiOBHm_Chr5g0022761 RchiOBHm_Chr5g0022841 RchiOBHm_Chr5g0022861 RchiOBHm_Chr5g0022911
rosa_laevigata	RLG00000032672 RLG00000032674 RLG00000032675 RLG00000032677 RLG00000032679 RLG00000035293
rosa_multiflora	Rmu_sc0000401.1_g000006 Rmu_sc0000401.1_g000007 Rmu_sc0000401.1_g000014 Rmu_sc0000401.1_g000026 Rmu_sc0000401.1_g000028 Rmu_sc0010181.1_g000001 Rmu_sc0010181.1_g000004 Rmu_sc0010181.1_g000009 Rmu_sc0042157.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056450 Rroxscaffold_1G00056490
rosa_rugosa	Rorug05G0075100
rosa_samantha	Rh5AG161600 Rh5BG099400 Rh5BG160400 Rh5BG160700 Rh5CG175100 Rh5DG161100 Rh5DG161300 Rh5DG161500 Rh5DG161600 Rh5DG161700 Rh5DG161900 Rh5DG162000 Rh5DG162400
rosa_wichuraiana	Rw5G014410 Rw5G014450 Rw5G014490 Rw5G014510 Rw5G014540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1508
AatII	GACGTC	1 cut(s)	204
Acc36I	ACCTGC	3 cut(s)	758, 1031, 2045
AccB1I	GGYRCC	6 cut(s)	173, 314, 1483, 1659, 1899, 1982
AccB7I	CCANNNNNTGG	1 cut(s)	2060
AccI	GTMKAC	1 cut(s)	72
AccII	CGCG	2 cut(s)	245, 373
AccIII	TCCGGA	1 cut(s)	1460
AclWI	GGATC	1 cut(s)	1574
AcoI	YGGCCR	1 cut(s)	645
AcsI	RAATTY	5 cut(s)	464, 755, 960, 1675, 1915
AcuI	CTGAAG	2 cut(s)	306, 867
AcvI	CACGTG	1 cut(s)	1406
AcyI	GRCGYC	3 cut(s)	27, 201, 1484
AdeI	CACNNNGTG	1 cut(s)	1406
AfaI	GTAC	4 cut(s)	164, 1308, 1392, 1490
AfeI	AGCGCT	1 cut(s)	1136
AfiI	CCNNNNNNNGG	6 cut(s)	512, 1106, 1301, 1375, 1563, 2060
AflII	CTTAAG	1 cut(s)	830
AgsI	TTSAA	4 cut(s)	274, 663, 721, 1582
AjiI	CACGTC	1 cut(s)	216
AjnI	CCWGG	9 cut(s)	131, 233, 418, 574, 724, 1517, 1654, 1894, 2059
Alw21I	GWGCWC	2 cut(s)	1195, 1411
Alw26I	GTCTC	2 cut(s)	565, 815
Alw44I	GTGCAC	1 cut(s)	1191
AlwI	GGATC	1 cut(s)	1574
AlwNI	CAGNNNCTG	2 cut(s)	1031, 1455
Ama87I	CYCGRG	2 cut(s)	566, 688
Aor13HI	TCCGGA	1 cut(s)	1460
Aor51HI	AGCGCT	1 cut(s)	1136
AoxI	GGCC	9 cut(s)	114, 181, 236, 259, 416, 645, 694, 1223, 1515
ApaLI	GTGCAC	1 cut(s)	1191
ApeKI	GCWGC	8 cut(s)	477, 1004, 1070, 1455, 1525, 1696, 1936, 2081
ApoI	RAATTY	5 cut(s)	464, 755, 960, 1675, 1915
Asp700I	GAANNNNTTC	1 cut(s)	961
AspA2I	CCTAGG	1 cut(s)	1295
AspLEI	GCGC	7 cut(s)	191, 583, 659, 1030, 1137, 1486, 2018
AsuC2I	CCSGG	8 cut(s)	113, 258, 267, 921, 1376, 1421, 1514, 1564
AsuHPI	GGTGA	8 cut(s)	10, 683, 755, 935, 1202, 1694, 1828, 1934
AvaI	CYCGRG	2 cut(s)	566, 688
AvaII	GGWCC	6 cut(s)	139, 1494, 1510, 1687, 1859, 1927
AvrII	CCTAGG	1 cut(s)	1295
BaeGI	GKGCMC	3 cut(s)	319, 845, 1195
BalI	TGGCCA	1 cut(s)	647
BanI	GGYRCC	6 cut(s)	173, 314, 1483, 1659, 1899, 1982
BanII	GRGCYC	1 cut(s)	1118
BbrPI	CACGTG	1 cut(s)	1406
BbsI	GAAGAC	3 cut(s)	1175, 1531, 1968
Bbv12I	GWGCWC	2 cut(s)	1195, 1411
BbvCI	CCTCAGC	1 cut(s)	1131
BbvI	GCAGC	8 cut(s)	464, 991, 1057, 1442, 1537, 1683, 1923, 2093
BccI	CCATC	8 cut(s)	18, 306, 498, 503, 793, 1215, 1261, 1763
BceAI	ACGGC	4 cut(s)	40, 196, 1471, 1970
BciT130I	CCWGG	9 cut(s)	133, 235, 420, 576, 726, 1519, 1656, 1896, 2061
BclI	TGATCA	1 cut(s)	1777
BcnI	CCSGG	8 cut(s)	113, 258, 267, 921, 1376, 1421, 1514, 1564
BcoDI	GTCTC	2 cut(s)	565, 815
BfaI	CTAG	4 cut(s)	89, 378, 1062, 1296
BfmI	CTRYAG	2 cut(s)	1032, 2038
BfoI	RGCGCY	6 cut(s)	192, 584, 660, 1031, 1138, 1487
BfrI	CTTAAG	1 cut(s)	830
BfuAI	ACCTGC	3 cut(s)	758, 1031, 2045
BglI	GCCNNNNNGGC	1 cut(s)	267
BglII	AGATCT	2 cut(s)	826, 1761
BlnI	CCTAGG	1 cut(s)	1295
Bme18I	GGWCC	6 cut(s)	139, 1494, 1510, 1687, 1859, 1927
BmeT110I	CYCGRG	2 cut(s)	566, 688
BmgBI	CACGTC	1 cut(s)	216
BmiI	GGNNCC	9 cut(s)	141, 175, 316, 504, 537, 1485, 1661, 1901, 1984
BmrI	ACTGGG	1 cut(s)	1182
BmsI	GCATC	3 cut(s)	238, 605, 1512
BmuI	ACTGGG	1 cut(s)	1182
BpiI	GAAGAC	3 cut(s)	1175, 1531, 1968
BplI	GAGNNNNNCTC	2 cut(s)	1310, 1342
BpmI	CTGGAG	4 cut(s)	27, 597, 864, 1987
Bpu10I	CCTNAGC	1 cut(s)	1131
BpuEI	CTTGAG	1 cut(s)	780
BpuMI	CCSGG	8 cut(s)	113, 258, 267, 921, 1376, 1421, 1514, 1564
BsaAI	YACGTR	1 cut(s)	1406
BsaBI	GATNNNNATC	1 cut(s)	990
BsaHI	GRCGYC	3 cut(s)	27, 201, 1484
BsaI	GGTCTC	1 cut(s)	565
BsaJI	CCNNGG	7 cut(s)	184, 243, 725, 1295, 1419, 1655, 1895
BsaWI	WCCGGW	4 cut(s)	1460, 1679, 1919, 2108
BsaXI	ACNNNNNCTCC	4 cut(s)	131, 161, 1481, 1511
Bsc4I	CCNNNNNNNGG	6 cut(s)	512, 1106, 1301, 1375, 1563, 2060
Bse118I	RCCGGY	1 cut(s)	2012
Bse1I	ACTGG	5 cut(s)	648, 958, 1177, 1496, 1970
Bse3DI	GCAATG	4 cut(s)	737, 965, 1363, 2082
Bse8I	GATNNNNATC	1 cut(s)	990
BseAI	TCCGGA	1 cut(s)	1460
BseBI	CCWGG	9 cut(s)	133, 235, 420, 576, 726, 1519, 1656, 1896, 2061
BseDI	CCNNGG	7 cut(s)	184, 243, 725, 1295, 1419, 1655, 1895
BseGI	GGATG	7 cut(s)	230, 253, 490, 628, 774, 1527, 1774
BseJI	GATNNNNATC	1 cut(s)	990
BseLI	CCNNNNNNNGG	6 cut(s)	512, 1106, 1301, 1375, 1563, 2060
BseMI	GCAATG	4 cut(s)	737, 965, 1363, 2082
BseMII	CTCAG	3 cut(s)	810, 1140, 1145
BseNI	ACTGG	5 cut(s)	648, 958, 1177, 1496, 1970
BseRI	GAGGAG	3 cut(s)	145, 1401, 1548
BseSI	GKGCMC	3 cut(s)	319, 845, 1195
BseXI	GCAGC	8 cut(s)	464, 991, 1057, 1442, 1537, 1683, 1923, 2093
BseYI	CCCAGC	1 cut(s)	1528
BsgI	GTGCAG	1 cut(s)	1002
Bsh1236I	CGCG	2 cut(s)	245, 373
BshFI	GGCC	9 cut(s)	116, 183, 238, 261, 418, 647, 696, 1225, 1517
BshNI	GGYRCC	6 cut(s)	173, 314, 1483, 1659, 1899, 1982
BsiHKAI	GWGCWC	2 cut(s)	1195, 1411
BsiHKCI	CYCGRG	2 cut(s)	566, 688
BslFI	GGGAC	4 cut(s)	503, 544, 1348, 1610
BslI	CCNNNNNNNGG	6 cut(s)	512, 1106, 1301, 1375, 1563, 2060
BsmAI	GTCTC	2 cut(s)	565, 815
BsmFI	GGGAC	4 cut(s)	503, 544, 1348, 1610
BsnI	GGCC	9 cut(s)	116, 183, 238, 261, 418, 647, 696, 1225, 1517
Bso31I	GGTCTC	1 cut(s)	565
BsoBI	CYCGRG	2 cut(s)	566, 688
Bsp1286I	GDGCHC	5 cut(s)	319, 845, 1118, 1195, 1411
Bsp13I	TCCGGA	1 cut(s)	1460
Bsp143I	GATC	4 cut(s)	826, 1566, 1761, 1777
BspANI	GGCC	9 cut(s)	116, 183, 238, 261, 418, 647, 696, 1225, 1517
BspCNI	CTCAG	3 cut(s)	811, 1141, 1144
BspEI	TCCGGA	1 cut(s)	1460
BspFNI	CGCG	2 cut(s)	245, 373
BspHI	TCATGA	2 cut(s)	1633, 1873
BspLI	GGNNCC	9 cut(s)	141, 175, 316, 504, 537, 1485, 1661, 1901, 1984
BspMAI	CTGCAG	2 cut(s)	1036, 2042
BspMI	ACCTGC	3 cut(s)	758, 1031, 2045
BspPI	GGATC	1 cut(s)	1574
BspT107I	GGYRCC	6 cut(s)	173, 314, 1483, 1659, 1899, 1982
BspTI	CTTAAG	1 cut(s)	830
BspTNI	GGTCTC	1 cut(s)	565
BsrDI	GCAATG	4 cut(s)	737, 965, 1363, 2082
BsrFI	RCCGGY	1 cut(s)	2012
BsrI	ACTGG	5 cut(s)	648, 958, 1177, 1496, 1970
BssAI	RCCGGY	1 cut(s)	2012
BssECI	CCNNGG	7 cut(s)	184, 243, 725, 1295, 1419, 1655, 1895
BssMI	GATC	4 cut(s)	826, 1566, 1761, 1777
BssNI	GRCGYC	3 cut(s)	27, 201, 1484
BssT1I	CCWWGG	1 cut(s)	1295
Bst2UI	CCWGG	9 cut(s)	133, 235, 420, 576, 726, 1519, 1656, 1896, 2061
Bst4CI	ACNGT	3 cut(s)	70, 1105, 1123
Bst6I	CTCTTC	2 cut(s)	20, 1468
BstACI	GRCGYC	3 cut(s)	27, 201, 1484
BstAFI	CTTAAG	1 cut(s)	830
BstAPI	GCANNNNNTGC	1 cut(s)	1455
BstBAI	YACGTR	1 cut(s)	1406
BstDEI	CTNAG	5 cut(s)	819, 1131, 1149, 1708, 1948
BstDSI	CCRYGG	1 cut(s)	243
BstENI	CCTNNNNNAGG	1 cut(s)	1299
BstF5I	GGATG	7 cut(s)	230, 253, 490, 628, 774, 1527, 1774
BstFNI	CGCG	2 cut(s)	245, 373
BstH2I	RGCGCY	6 cut(s)	192, 584, 660, 1031, 1138, 1487
BstHHI	GCGC	7 cut(s)	191, 583, 659, 1030, 1137, 1486, 2018
BstKTI	GATC	4 cut(s)	829, 1569, 1764, 1780
BstMAI	GTCTC	2 cut(s)	565, 815
BstMBI	GATC	4 cut(s)	826, 1566, 1761, 1777
BstMWI	GCNNNNNNNGC	8 cut(s)	38, 180, 248, 267, 276, 1067, 1455, 2081
BstNI	CCWGG	9 cut(s)	133, 235, 420, 576, 726, 1519, 1656, 1896, 2061
BstNSI	RCATGY	1 cut(s)	2022
BstSFI	CTRYAG	2 cut(s)	1032, 2038
BstSLI	GKGCMC	3 cut(s)	319, 845, 1195
BstUI	CGCG	2 cut(s)	245, 373
BstV1I	GCAGC	8 cut(s)	464, 991, 1057, 1442, 1537, 1683, 1923, 2093
BstV2I	GAAGAC	3 cut(s)	1175, 1531, 1968
BstX2I	RGATCY	2 cut(s)	826, 1761
BstYI	RGATCY	2 cut(s)	826, 1761
BsuRI	GGCC	9 cut(s)	116, 183, 238, 261, 418, 647, 696, 1225, 1517
BtgI	CCRYGG	1 cut(s)	243
BtrI	CACGTC	1 cut(s)	216
BtsCI	GGATG	7 cut(s)	230, 253, 490, 628, 774, 1527, 1774
BtsI	GCAGTG	2 cut(s)	648, 1236
BtsIMutI	CAGTG	4 cut(s)	641, 648, 843, 1236
BveI	ACCTGC	3 cut(s)	758, 1031, 2045
CaiI	CAGNNNCTG	2 cut(s)	1031, 1455
CciI	TCATGA	2 cut(s)	1633, 1873
CfoI	GCGC	7 cut(s)	191, 583, 659, 1030, 1137, 1486, 2018
Cfr10I	RCCGGY	1 cut(s)	2012
Cfr42I	CCGCGG	1 cut(s)	246
CseI	GACGC	3 cut(s)	16, 1461, 1561
Csp6I	GTAC	4 cut(s)	163, 1307, 1391, 1489
CviAII	CATG	5 cut(s)	160, 1349, 1634, 1874, 2019
CviQI	GTAC	4 cut(s)	163, 1307, 1391, 1489
DdeI	CTNAG	5 cut(s)	819, 1131, 1149, 1708, 1948
DinI	GGCGCC	1 cut(s)	1485
DpnI	GATC	4 cut(s)	828, 1568, 1763, 1779
DpnII	GATC	4 cut(s)	826, 1566, 1761, 1777
DraI	TTTAAA	1 cut(s)	603
DraIII	CACNNNGTG	1 cut(s)	1406
DrdI	GACNNNNNNGTC	1 cut(s)	1508
DseDI	GACNNNNNNGTC	1 cut(s)	1508
EaeI	YGGCCR	1 cut(s)	645
Eam1104I	CTCTTC	2 cut(s)	20, 1468
EarI	CTCTTC	2 cut(s)	20, 1468
Eco130I	CCWWGG	1 cut(s)	1295
Eco147I	AGGCCT	1 cut(s)	696
Eco24I	GRGCYC	1 cut(s)	1118
Eco31I	GGTCTC	1 cut(s)	565
Eco32I	GATATC	1 cut(s)	988
Eco47I	GGWCC	6 cut(s)	139, 1494, 1510, 1687, 1859, 1927
Eco47III	AGCGCT	1 cut(s)	1136
Eco57I	CTGAAG	2 cut(s)	306, 867
Eco72I	CACGTG	1 cut(s)	1406
Eco88I	CYCGRG	2 cut(s)	566, 688
EcoNI	CCTNNNNNAGG	1 cut(s)	1299
EcoRI	GAATTC	2 cut(s)	1675, 1915
EcoRII	CCWGG	9 cut(s)	131, 233, 418, 574, 724, 1517, 1654, 1894, 2059
EcoRV	GATATC	1 cut(s)	988
EcoT14I	CCWWGG	1 cut(s)	1295
EcoT38I	GRGCYC	1 cut(s)	1118
EgeI	GGCGCC	1 cut(s)	1485
EheI	GGCGCC	1 cut(s)	1485
ErhI	CCWWGG	1 cut(s)	1295
FaeI	CATG	5 cut(s)	163, 1352, 1637, 1877, 2022
FaqI	GGGAC	4 cut(s)	503, 544, 1348, 1610
FatI	CATG	5 cut(s)	159, 1348, 1633, 1873, 2018
FauI	CCCGC	4 cut(s)	247, 270, 646, 714
FbaI	TGATCA	1 cut(s)	1777
FblI	GTMKAC	1 cut(s)	72
FokI	GGATG	7 cut(s)	217, 260, 477, 615, 761, 1534, 1781
FriOI	GRGCYC	1 cut(s)	1118
FspBI	CTAG	4 cut(s)	89, 378, 1062, 1296
GlaI	GCGC	7 cut(s)	190, 582, 658, 1029, 1136, 1485, 2017
GsaI	CCCAGC	1 cut(s)	1532
GsuI	CTGGAG	4 cut(s)	27, 597, 864, 1987
HaeII	RGCGCY	6 cut(s)	192, 584, 660, 1031, 1138, 1487
HaeIII	GGCC	9 cut(s)	116, 183, 238, 261, 418, 647, 696, 1225, 1517
HgaI	GACGC	3 cut(s)	16, 1461, 1561
HhaI	GCGC	7 cut(s)	191, 583, 659, 1030, 1137, 1486, 2018
Hin1I	GRCGYC	3 cut(s)	27, 201, 1484
Hin1II	CATG	5 cut(s)	163, 1352, 1637, 1877, 2022
Hin6I	GCGC	7 cut(s)	189, 581, 657, 1028, 1135, 1484, 2016
HinP1I	GCGC	7 cut(s)	189, 581, 657, 1028, 1135, 1484, 2016
HincII	GTYRAC	1 cut(s)	1242
HindII	GTYRAC	1 cut(s)	1242
HindIII	AAGCTT	2 cut(s)	342, 394
HinfI	GANTC	8 cut(s)	381, 516, 557, 869, 1203, 1466, 1536, 2102
HphI	GGTGA	8 cut(s)	10, 683, 755, 935, 1202, 1694, 1828, 1934
Hpy166II	GTNNAC	4 cut(s)	73, 439, 1193, 1242
Hpy188I	TCNGA	9 cut(s)	109, 139, 199, 286, 327, 702, 1443, 1501, 2101
Hpy8I	GTNNAC	4 cut(s)	73, 439, 1193, 1242
Hpy99I	CGWCG	7 cut(s)	32, 182, 203, 206, 220, 1505, 1577
HpyAV	CCTTC	5 cut(s)	572, 707, 1084, 1553, 1789
HpyCH4III	ACNGT	3 cut(s)	70, 1105, 1123
HpyCH4IV	ACGT	3 cut(s)	201, 215, 1405
HpyF10VI	GCNNNNNNNGC	8 cut(s)	38, 180, 248, 267, 276, 1067, 1455, 2081
HpyF3I	CTNAG	5 cut(s)	819, 1131, 1149, 1708, 1948
HpySE526I	ACGT	3 cut(s)	201, 215, 1405
Hsp92I	GRCGYC	3 cut(s)	27, 201, 1484
Hsp92II	CATG	5 cut(s)	163, 1352, 1637, 1877, 2022
HspAI	GCGC	7 cut(s)	189, 581, 657, 1028, 1135, 1484, 2016
KasI	GGCGCC	1 cut(s)	1483
Kpn2I	TCCGGA	1 cut(s)	1460
Ksp22I	TGATCA	1 cut(s)	1777
KspI	CCGCGG	1 cut(s)	246
Kzo9I	GATC	4 cut(s)	826, 1566, 1761, 1777
LmnI	GCTCC	9 cut(s)	46, 52, 553, 578, 1109, 1318, 1414, 1463, 1772
Lsp1109I	GCAGC	8 cut(s)	464, 991, 1057, 1442, 1537, 1683, 1923, 2093
LweI	GCATC	3 cut(s)	238, 605, 1512
MaeI	CTAG	4 cut(s)	89, 378, 1062, 1296
MaeII	ACGT	3 cut(s)	201, 215, 1405
MaeIII	GTNAC	1 cut(s)	1816
MalI	GATC	4 cut(s)	828, 1568, 1763, 1779
MboI	GATC	4 cut(s)	826, 1566, 1761, 1777
MboII	GAAGA	6 cut(s)	7, 969, 1180, 1485, 1531, 1973
MfeI	CAATTG	2 cut(s)	1691, 1931
MflI	RGATCY	2 cut(s)	826, 1761
MhlI	GDGCHC	5 cut(s)	319, 845, 1118, 1195, 1411
MlsI	TGGCCA	1 cut(s)	647
MluNI	TGGCCA	1 cut(s)	647
Mly113I	GGCGCC	1 cut(s)	1484
MlyI	GAGTC	3 cut(s)	525, 566, 1545
MmeI	TCCRAC	5 cut(s)	117, 132, 222, 1439, 1524
Mox20I	TGGCCA	1 cut(s)	647
MroI	TCCGGA	1 cut(s)	1460
MroXI	GAANNNNTTC	1 cut(s)	961
MscI	TGGCCA	1 cut(s)	647
MseI	TTAA	7 cut(s)	602, 624, 759, 831, 1047, 1823, 2007
Msp20I	TGGCCA	1 cut(s)	647
MspA1I	CMGCKG	3 cut(s)	245, 1070, 1528
MspCI	CTTAAG	1 cut(s)	830
MunI	CAATTG	2 cut(s)	1691, 1931
MvaI	CCWGG	9 cut(s)	133, 235, 420, 576, 726, 1519, 1656, 1896, 2061
MvnI	CGCG	2 cut(s)	245, 373
MwoI	GCNNNNNNNGC	8 cut(s)	38, 180, 248, 267, 276, 1067, 1455, 2081
NarI	GGCGCC	1 cut(s)	1484
NciI	CCSGG	8 cut(s)	113, 258, 267, 921, 1376, 1421, 1514, 1564
NdeII	GATC	4 cut(s)	826, 1566, 1761, 1777
NlaIII	CATG	5 cut(s)	163, 1352, 1637, 1877, 2022
NlaIV	GGNNCC	9 cut(s)	141, 175, 316, 504, 537, 1485, 1661, 1901, 1984
NmeAIII	GCCGAG	1 cut(s)	165
NmuCI	GTSAC	1 cut(s)	1816
NspI	RCATGY	1 cut(s)	2022
PaeI	GCATGC	1 cut(s)	2022
PagI	TCATGA	2 cut(s)	1633, 1873
PceI	AGGCCT	1 cut(s)	696
PcsI	WCGNNNNNNNCGW	1 cut(s)	1109
PdmI	GAANNNNTTC	1 cut(s)	961
PfeI	GAWTC	5 cut(s)	381, 869, 1203, 1466, 2102
PflFI	GACNNNGTC	1 cut(s)	1508
PflMI	CCANNNNNTGG	1 cut(s)	2060
PfoI	TCCNGGA	1 cut(s)	1374
PleI	GAGTC	3 cut(s)	524, 565, 1544
PluTI	GGCGCC	1 cut(s)	1487
PmaCI	CACGTG	1 cut(s)	1406
PmlI	CACGTG	1 cut(s)	1406
PpsI	GAGTC	3 cut(s)	524, 565, 1544
Ppu21I	YACGTR	1 cut(s)	1406
Psp6I	CCWGG	9 cut(s)	131, 233, 418, 574, 724, 1517, 1654, 1894, 2059
PspCI	CACGTG	1 cut(s)	1406
PspFI	CCCAGC	1 cut(s)	1528
PspGI	CCWGG	9 cut(s)	131, 233, 418, 574, 724, 1517, 1654, 1894, 2059
PspN4I	GGNNCC	9 cut(s)	141, 175, 316, 504, 537, 1485, 1661, 1901, 1984
PstI	CTGCAG	2 cut(s)	1036, 2042
PstNI	CAGNNNCTG	2 cut(s)	1031, 1455
PsuI	RGATCY	2 cut(s)	826, 1761
PsyI	GACNNNGTC	1 cut(s)	1508
PvuII	CAGCTG	2 cut(s)	1070, 1528
RsaI	GTAC	4 cut(s)	164, 1308, 1392, 1490
RsaNI	GTAC	4 cut(s)	163, 1307, 1391, 1489
SacII	CCGCGG	1 cut(s)	246
SaqAI	TTAA	7 cut(s)	602, 624, 759, 831, 1047, 1823, 2007
Sau3AI	GATC	4 cut(s)	826, 1566, 1761, 1777
SchI	GAGTC	3 cut(s)	525, 566, 1545
SduI	GDGCHC	5 cut(s)	319, 845, 1118, 1195, 1411
SfaNI	GCATC	3 cut(s)	238, 605, 1512
SfcI	CTRYAG	2 cut(s)	1032, 2038
SfoI	GGCGCC	1 cut(s)	1485
Sfr303I	CCGCGG	1 cut(s)	246
SgrBI	CCGCGG	1 cut(s)	246
SinI	GGWCC	6 cut(s)	139, 1494, 1510, 1687, 1859, 1927
SmlI	CTYRAG	2 cut(s)	795, 830
SmoI	CTYRAG	2 cut(s)	795, 830
SphI	GCATGC	1 cut(s)	2022
SseBI	AGGCCT	1 cut(s)	696
SspDI	GGCGCC	1 cut(s)	1483
SspMI	CTAG	4 cut(s)	89, 378, 1062, 1296
StuI	AGGCCT	1 cut(s)	696
StyI	CCWWGG	1 cut(s)	1295
TaaI	ACNGT	3 cut(s)	70, 1105, 1123
TaiI	ACGT	3 cut(s)	204, 218, 1408
TaqI	TCGA	2 cut(s)	353, 384
TauI	GCSGC	2 cut(s)	245, 1484
TfiI	GAWTC	5 cut(s)	381, 869, 1203, 1466, 2102
Tru1I	TTAA	7 cut(s)	602, 624, 759, 831, 1047, 1823, 2007
Tru9I	TTAA	7 cut(s)	602, 624, 759, 831, 1047, 1823, 2007
TscAI	CASTG	4 cut(s)	648, 655, 850, 1236
TseFI	GTSAC	1 cut(s)	1816
TseI	GCWGC	8 cut(s)	477, 1004, 1070, 1455, 1525, 1696, 1936, 2081
Tsp45I	GTSAC	1 cut(s)	1816
TspDTI	ATGAA	8 cut(s)	861, 954, 1181, 1622, 1650, 1862, 1890, 1974
TspGWI	ACGGA	2 cut(s)	851, 927
TspRI	CASTG	4 cut(s)	648, 655, 850, 1236
Tth111I	GACNNNGTC	1 cut(s)	1508
Van91I	CCANNNNNTGG	1 cut(s)	2060
Vha464I	CTTAAG	1 cut(s)	830
VneI	GTGCAC	1 cut(s)	1191
VpaK11BI	GGWCC	6 cut(s)	139, 1494, 1510, 1687, 1859, 1927
XagI	CCTNNNNNAGG	1 cut(s)	1299
XapI	RAATTY	5 cut(s)	464, 755, 960, 1675, 1915
XceI	RCATGY	1 cut(s)	2022
XcmI	CCANNNNNNNNNTGG	3 cut(s)	326, 1525, 2057
XmaJI	CCTAGG	1 cut(s)	1295
XmiI	GTMKAC	1 cut(s)	72
XmnI	GAANNNNTTC	1 cut(s)	961
XspI	CTAG	4 cut(s)	89, 378, 1062, 1296
ZraI	GACGTC	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.