Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010181.1

Orthogroup ID

OG0000820

Physical Location & Seq

Genomic Coordinates Forward (+)

13030 .. 18461

Gene Structure 5432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010181.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atggcgagccatctcttcacctacggagccgcccaatcagctccagctcccactcctgctctctccaccgtctacacccctcgctccctagcccaatcctacctctccgacccgacccaccgctacctttccgggtcggaccctctctccacttcctccatgtacctcgccggcaccgacggcctcggcgcttactccgacgccgccagagcgacgtcgtatatgatgtcctcctggcccgcccccgatgccgaacccggcccgcccggcttcaaacgcacctctgaagcactctaccatcaggctcttttgggtgcccataatccgattgggcaaatggaagcttggtattcaacaaattctttagcaaagcgacctagattcgagaatacaagcttgcctatttatccacagaggccaggagagaaagattgtgtccactatatgcaaacaagaacctgtaaatttggagagggctgcaagtttgaccatcctatttgggttcctgatggtggaatccaagattggaaagagggtgccgttatctgtgtgtattaccttaaaactggcacatgcaagtatggtgcaacctgcagatttgaccacccacctcctggcgaagttgtagcaatggcagcttcacaagcaaaatctgattctactggaggaaaagcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001709 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0032502 GO:0034248 GO:0034249 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045165 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048869 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1903311 GO:1903313 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

225

Amino Acids

24.29

Weight (kDa)

7.03

Isoelectric Point (pI)

38.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12680
fragaria_vesca	FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640
malus_domestica	MD03G1280400.v1.1 MD06G1158700.v1.1 MD06G1158900.v1.1 MD06G1159100.v1.1 MD10G1219700.v1.1
prunus_persica	Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.7G013500_v2.0.a1 Prupe.8G067100_v2.0.a1
pyrus_communis	pycom06g14160 pycom06g14170 pycom10g18590
rosa_chinensis	RchiOBHm_Chr5g0022551 RchiOBHm_Chr5g0022581 RchiOBHm_Chr5g0022611 RchiOBHm_Chr5g0022711 RchiOBHm_Chr5g0022731 RchiOBHm_Chr5g0022751 RchiOBHm_Chr5g0022761 RchiOBHm_Chr5g0022841 RchiOBHm_Chr5g0022861 RchiOBHm_Chr5g0022911
rosa_laevigata	RLG00000032672 RLG00000032674 RLG00000032675 RLG00000032677 RLG00000032679 RLG00000035293
rosa_multiflora	Rmu_sc0000401.1_g000006 Rmu_sc0000401.1_g000007 Rmu_sc0000401.1_g000014 Rmu_sc0000401.1_g000026 Rmu_sc0000401.1_g000028 Rmu_sc0010181.1_g000001 Rmu_sc0010181.1_g000004 Rmu_sc0010181.1_g000009 Rmu_sc0042157.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056450 Rroxscaffold_1G00056490
rosa_rugosa	Rorug05G0075100
rosa_samantha	Rh5AG161600 Rh5BG099400 Rh5BG160400 Rh5BG160700 Rh5CG175100 Rh5DG161100 Rh5DG161300 Rh5DG161500 Rh5DG161600 Rh5DG161700 Rh5DG161900 Rh5DG162000 Rh5DG162400
rosa_wichuraiana	Rw5G014410 Rw5G014450 Rw5G014490 Rw5G014510 Rw5G014540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	218
Acc36I	ACCTGC	1 cut(s)	599
AccB1I	GGYRCC	3 cut(s)	173, 314, 536
AccB7I	CCANNNNNTGG	1 cut(s)	614
AccI	GTMKAC	1 cut(s)	72
AciI	CCGC	5 cut(s)	30, 121, 204, 240, 263
AcsI	RAATTY	2 cut(s)	358, 464
AcuI	CTGAAG	1 cut(s)	306
AcyI	GRCGYC	2 cut(s)	201, 215
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	2 cut(s)	512, 614
AgsI	TTSAA	2 cut(s)	274, 354
AjnI	CCWGG	3 cut(s)	233, 418, 613
AjuI	GAANNNNNNNTTGG	2 cut(s)	508, 540
AluBI	AGCT	5 cut(s)	41, 47, 344, 396, 638
AluI	AGCT	5 cut(s)	41, 47, 344, 396, 638
AoxI	GGCC	4 cut(s)	181, 236, 259, 416
ApeKI	GCWGC	2 cut(s)	477, 635
ApoI	RAATTY	2 cut(s)	358, 464
AspLEI	GCGC	1 cut(s)	191
AspS9I	GGNCC	3 cut(s)	139, 237, 260
AsuC2I	CCSGG	3 cut(s)	133, 258, 267
AsuHPI	GGTGA	1 cut(s)	10
AvaII	GGWCC	1 cut(s)	139
BaeGI	GKGCMC	1 cut(s)	319
BanI	GGYRCC	3 cut(s)	173, 314, 536
BbvI	GCAGC	2 cut(s)	464, 647
BccI	CCATC	4 cut(s)	18, 306, 498, 503
BceAI	ACGGC	2 cut(s)	196, 524
BciT130I	CCWGG	3 cut(s)	235, 420, 615
BcnI	CCSGG	3 cut(s)	133, 258, 267
BfaI	CTAG	2 cut(s)	89, 378
BfmI	CTRYAG	1 cut(s)	592
BfoI	RGCGCY	1 cut(s)	192
BfuAI	ACCTGC	1 cut(s)	599
BglI	GCCNNNNNGGC	1 cut(s)	267
BisI	GCNGC	4 cut(s)	30, 204, 478, 636
BlsI	GCNGC	4 cut(s)	31, 205, 479, 637
Bme1390I	CCNGG	6 cut(s)	133, 235, 258, 267, 420, 615
Bme18I	GGWCC	1 cut(s)	139
BmgT120I	GGNCC	3 cut(s)	139, 237, 260
BmiI	GGNNCC	6 cut(s)	28, 141, 175, 316, 504, 538
BmrFI	CCNGG	6 cut(s)	133, 235, 258, 267, 420, 615
BmsI	GCATC	1 cut(s)	238
BpmI	CTGGAG	1 cut(s)	27
BpuMI	CCSGG	3 cut(s)	133, 258, 267
BsaHI	GRCGYC	2 cut(s)	201, 215
BsaJI	CCNNGG	1 cut(s)	184
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	2 cut(s)	512, 614
Bse118I	RCCGGY	1 cut(s)	170
Bse1I	ACTGG	2 cut(s)	571, 667
Bse3DI	GCAATG	1 cut(s)	636
BseBI	CCWGG	3 cut(s)	235, 420, 615
BseDI	CCNNGG	1 cut(s)	184
BseGI	GGATG	1 cut(s)	490
BseLI	CCNNNNNNNGG	2 cut(s)	512, 614
BseMI	GCAATG	1 cut(s)	636
BseNI	ACTGG	2 cut(s)	571, 667
BseSI	GKGCMC	1 cut(s)	319
BseXI	GCAGC	2 cut(s)	464, 647
BshFI	GGCC	4 cut(s)	183, 238, 261, 418
BshNI	GGYRCC	3 cut(s)	173, 314, 536
BsiSI	CCGG	4 cut(s)	132, 171, 258, 267
BslI	CCNNNNNNNGG	2 cut(s)	512, 614
BsnI	GGCC	4 cut(s)	183, 238, 261, 418
Bsp1286I	GDGCHC	1 cut(s)	319
BspACI	CCGC	5 cut(s)	30, 121, 204, 240, 263
BspANI	GGCC	4 cut(s)	183, 238, 261, 418
BspLI	GGNNCC	6 cut(s)	28, 141, 175, 316, 504, 538
BspMAI	CTGCAG	1 cut(s)	596
BspMI	ACCTGC	1 cut(s)	599
BspT107I	GGYRCC	3 cut(s)	173, 314, 536
BsrDI	GCAATG	1 cut(s)	636
BsrFI	RCCGGY	1 cut(s)	170
BsrI	ACTGG	2 cut(s)	571, 667
BssAI	RCCGGY	1 cut(s)	170
BssECI	CCNNGG	1 cut(s)	184
BssNI	GRCGYC	2 cut(s)	201, 215
Bst2UI	CCWGG	3 cut(s)	235, 420, 615
Bst4CI	ACNGT	1 cut(s)	70
Bst6I	CTCTTC	1 cut(s)	20
BstACI	GRCGYC	2 cut(s)	201, 215
BstC8I	GCNNGC	5 cut(s)	7, 172, 240, 263, 398
BstF5I	GGATG	1 cut(s)	490
BstH2I	RGCGCY	1 cut(s)	192
BstHHI	GCGC	1 cut(s)	191
BstMWI	GCNNNNNNNGC	8 cut(s)	38, 180, 209, 248, 267, 276, 635, 644
BstNI	CCWGG	3 cut(s)	235, 420, 615
BstNSI	RCATGY	1 cut(s)	576
BstSCI	CCNGG	6 cut(s)	131, 233, 256, 265, 418, 613
BstSFI	CTRYAG	1 cut(s)	592
BstSLI	GKGCMC	1 cut(s)	319
BstV1I	GCAGC	2 cut(s)	464, 647
BsuRI	GGCC	4 cut(s)	183, 238, 261, 418
BtsCI	GGATG	1 cut(s)	490
BveI	ACCTGC	1 cut(s)	599
Cac8I	GCNNGC	5 cut(s)	7, 172, 240, 263, 398
CfoI	GCGC	1 cut(s)	191
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	3 cut(s)	139, 237, 260
CseI	GACGC	1 cut(s)	209
Csp6I	GTAC	1 cut(s)	163
CviAII	CATG	2 cut(s)	160, 573
CviQI	GTAC	1 cut(s)	163
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	139
Eco57I	CTGAAG	1 cut(s)	306
EcoRII	CCWGG	3 cut(s)	233, 418, 613
FaeI	CATG	2 cut(s)	163, 576
FaiI	YATR	9 cut(s)	161, 222, 224, 321, 444, 446, 574, 582, 676
FatI	CATG	2 cut(s)	159, 572
FauI	CCCGC	2 cut(s)	247, 270
FblI	GTMKAC	1 cut(s)	72
Fnu4HI	GCNGC	4 cut(s)	30, 204, 478, 636
FokI	GGATG	1 cut(s)	477
Fsp4HI	GCNGC	4 cut(s)	30, 204, 478, 636
FspBI	CTAG	2 cut(s)	89, 378
GlaI	GCGC	1 cut(s)	190
GluI	GCNGC	4 cut(s)	30, 204, 478, 636
GsuI	CTGGAG	1 cut(s)	27
HaeII	RGCGCY	1 cut(s)	192
HaeIII	GGCC	4 cut(s)	183, 238, 261, 418
HapII	CCGG	4 cut(s)	132, 171, 258, 267
HgaI	GACGC	1 cut(s)	209
HhaI	GCGC	1 cut(s)	191
Hin1I	GRCGYC	2 cut(s)	201, 215
Hin1II	CATG	2 cut(s)	163, 576
Hin6I	GCGC	1 cut(s)	189
HinP1I	GCGC	1 cut(s)	189
HindIII	AAGCTT	2 cut(s)	342, 394
HinfI	GANTC	3 cut(s)	381, 516, 656
HpaII	CCGG	4 cut(s)	132, 171, 258, 267
HphI	GGTGA	1 cut(s)	10
Hpy166II	GTNNAC	2 cut(s)	73, 439
Hpy188I	TCNGA	6 cut(s)	109, 139, 199, 286, 327, 655
Hpy188III	TCNNGA	2 cut(s)	385, 506
Hpy8I	GTNNAC	2 cut(s)	73, 439
Hpy99I	CGWCG	4 cut(s)	182, 203, 217, 220
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4IV	ACGT	1 cut(s)	215
HpyCH4V	TGCA	5 cut(s)	448, 480, 576, 587, 594
HpyF10VI	GCNNNNNNNGC	8 cut(s)	38, 180, 209, 248, 267, 276, 635, 644
HpySE526I	ACGT	1 cut(s)	215
Hsp92I	GRCGYC	2 cut(s)	201, 215
Hsp92II	CATG	2 cut(s)	163, 576
HspAI	GCGC	1 cut(s)	189
KroI	GCCGGC	1 cut(s)	170
KroNI	GCCGGC	1 cut(s)	172
LmnI	GCTCC	4 cut(s)	26, 46, 52, 89
Lsp1109I	GCAGC	2 cut(s)	464, 647
LweI	GCATC	1 cut(s)	238
MaeI	CTAG	2 cut(s)	89, 378
MaeII	ACGT	1 cut(s)	215
MboII	GAAGA	1 cut(s)	7
MhlI	GDGCHC	1 cut(s)	319
MluCI	AATT	2 cut(s)	358, 464
MmeI	TCCRAC	3 cut(s)	117, 132, 222
MroNI	GCCGGC	1 cut(s)	170
MseI	TTAA	1 cut(s)	561
MspI	CCGG	4 cut(s)	132, 171, 258, 267
MspR9I	CCNGG	6 cut(s)	133, 235, 258, 267, 420, 615
MvaI	CCWGG	3 cut(s)	235, 420, 615
MwoI	GCNNNNNNNGC	8 cut(s)	38, 180, 209, 248, 267, 276, 635, 644
NaeI	GCCGGC	1 cut(s)	172
NciI	CCSGG	3 cut(s)	133, 258, 267
NgoMIV	GCCGGC	1 cut(s)	170
NlaIII	CATG	2 cut(s)	163, 576
NlaIV	GGNNCC	6 cut(s)	28, 141, 175, 316, 504, 538
NmeAIII	GCCGAG	1 cut(s)	165
NspI	RCATGY	1 cut(s)	576
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PdiI	GCCGGC	1 cut(s)	172
PfeI	GAWTC	3 cut(s)	381, 516, 656
PflMI	CCANNNNNTGG	1 cut(s)	614
PkrI	GCNGC	4 cut(s)	31, 205, 479, 637
Psp6I	CCWGG	3 cut(s)	233, 418, 613
PspGI	CCWGG	3 cut(s)	233, 418, 613
PspN4I	GGNNCC	6 cut(s)	28, 141, 175, 316, 504, 538
PspPI	GGNCC	3 cut(s)	139, 237, 260
PstI	CTGCAG	1 cut(s)	596
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
SaqAI	TTAA	1 cut(s)	561
SatI	GCNGC	4 cut(s)	30, 204, 478, 636
Sau96I	GGNCC	3 cut(s)	139, 237, 260
ScrFI	CCNGG	6 cut(s)	133, 235, 258, 267, 420, 615
SduI	GDGCHC	1 cut(s)	319
SfaNI	GCATC	1 cut(s)	238
SfcI	CTRYAG	1 cut(s)	592
SinI	GGWCC	1 cut(s)	139
Sse9I	AATT	2 cut(s)	358, 464
SsiI	CCGC	5 cut(s)	30, 121, 204, 240, 263
SspMI	CTAG	2 cut(s)	89, 378
StyD4I	CCNGG	6 cut(s)	131, 233, 256, 265, 418, 613
TaaI	ACNGT	1 cut(s)	70
TaiI	ACGT	1 cut(s)	218
TaqI	TCGA	1 cut(s)	384
TasI	AATT	2 cut(s)	358, 464
TauI	GCSGC	2 cut(s)	32, 206
TfiI	GAWTC	3 cut(s)	381, 516, 656
Tru1I	TTAA	1 cut(s)	561
Tru9I	TTAA	1 cut(s)	561
TseI	GCWGC	2 cut(s)	477, 635
TspGWI	ACGGA	1 cut(s)	39
Van91I	CCANNNNNTGG	1 cut(s)	614
VpaK11BI	GGWCC	1 cut(s)	139
XapI	RAATTY	2 cut(s)	358, 464
XceI	RCATGY	1 cut(s)	576
XcmI	CCANNNNNNNNNTGG	2 cut(s)	326, 611
XmiI	GTMKAC	1 cut(s)	72
XspI	CTAG	2 cut(s)	89, 378
ZraI	GACGTC	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.