Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0000820

Physical Location & Seq

Genomic Coordinates Forward (+)

1902356 .. 1904590

Gene Structure 2235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G013500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGTGGCAATGTAAGTTTGGTGCAACCTGCAAATTTCATCACCCGAAAGATATCCTAATACCATCAGCCGAGCAAGAGAATACATTTGGAGAAACTGGGACAACTATTCAGCCGGAGGGAACTGGATTTGCTGTGAAGCCTCCTGTTTCATTCATCCCTGCACTGTCATTTAACTCCAAGGGTCTTCCTGTAAGACCGGGTGAACCCGATTGTCCATTCTACCTAATTGGAAGTTGCATGTATGGGGCCACTTGGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001709 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0032502 GO:0034248 GO:0034249 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045165 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048869 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1903311 GO:1903313 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

87

Amino Acids

9.35

Weight (kDa)

6.03

Isoelectric Point (pI)

40.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12680
fragaria_vesca	FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640
malus_domestica	MD03G1280400.v1.1 MD06G1158700.v1.1 MD06G1158900.v1.1 MD06G1159100.v1.1 MD10G1219700.v1.1
prunus_persica	Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.7G013500_v2.0.a1 Prupe.8G067100_v2.0.a1
pyrus_communis	pycom06g14160 pycom06g14170 pycom10g18590
rosa_chinensis	RchiOBHm_Chr5g0022551 RchiOBHm_Chr5g0022581 RchiOBHm_Chr5g0022611 RchiOBHm_Chr5g0022711 RchiOBHm_Chr5g0022731 RchiOBHm_Chr5g0022751 RchiOBHm_Chr5g0022761 RchiOBHm_Chr5g0022841 RchiOBHm_Chr5g0022861 RchiOBHm_Chr5g0022911
rosa_laevigata	RLG00000032672 RLG00000032674 RLG00000032675 RLG00000032677 RLG00000032679 RLG00000035293
rosa_multiflora	Rmu_sc0000401.1_g000006 Rmu_sc0000401.1_g000007 Rmu_sc0000401.1_g000014 Rmu_sc0000401.1_g000026 Rmu_sc0000401.1_g000028 Rmu_sc0010181.1_g000001 Rmu_sc0010181.1_g000004 Rmu_sc0010181.1_g000009 Rmu_sc0042157.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056450 Rroxscaffold_1G00056490
rosa_rugosa	Rorug05G0075100
rosa_samantha	Rh5AG161600 Rh5BG099400 Rh5BG160400 Rh5BG160700 Rh5CG175100 Rh5DG161100 Rh5DG161300 Rh5DG161500 Rh5DG161600 Rh5DG161700 Rh5DG161900 Rh5DG162000 Rh5DG162400
rosa_wichuraiana	Rw5G014410 Rw5G014450 Rw5G014490 Rw5G014510 Rw5G014540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	35
AcsI	RAATTY	1 cut(s)	32
AoxI	GGCC	1 cut(s)	246
ApoI	RAATTY	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	246
AsuC2I	CCSGG	1 cut(s)	198
AsuHPI	GGTGA	2 cut(s)	32, 212
BbsI	GAAGAC	1 cut(s)	176
BccI	CCATC	1 cut(s)	70
BcnI	CCSGG	1 cut(s)	198
BfuAI	ACCTGC	1 cut(s)	35
BglI	GCCNNNNNGGC	1 cut(s)	254
Bme1390I	CCNGG	1 cut(s)	198
BmgT120I	GGNCC	1 cut(s)	246
BmiI	GGNNCC	1 cut(s)	247
BmrFI	CCNGG	1 cut(s)	198
BmrI	ACTGGG	1 cut(s)	105
BmuI	ACTGGG	1 cut(s)	105
BpiI	GAAGAC	1 cut(s)	176
BpuMI	CCSGG	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	177
Bse1I	ACTGG	2 cut(s)	100, 127
Bse3DI	GCAATG	1 cut(s)	14
BseDI	CCNNGG	1 cut(s)	177
BseGI	GGATG	1 cut(s)	153
BseMI	GCAATG	1 cut(s)	14
BseNI	ACTGG	2 cut(s)	100, 127
BsgI	GTGCAG	1 cut(s)	144
BshFI	GGCC	1 cut(s)	248
BsiSI	CCGG	2 cut(s)	113, 197
BslFI	GGGAC	1 cut(s)	112
BsmFI	GGGAC	1 cut(s)	112
BsnI	GGCC	1 cut(s)	248
BspANI	GGCC	1 cut(s)	248
BspLI	GGNNCC	1 cut(s)	247
BspMI	ACCTGC	1 cut(s)	35
BsrDI	GCAATG	1 cut(s)	14
BsrI	ACTGG	2 cut(s)	100, 127
BssECI	CCNNGG	1 cut(s)	177
BssT1I	CCWWGG	1 cut(s)	177
Bst4CI	ACNGT	1 cut(s)	165
BstF5I	GGATG	1 cut(s)	153
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNSI	RCATGY	1 cut(s)	241
BstSCI	CCNGG	1 cut(s)	196
BstV2I	GAAGAC	1 cut(s)	176
BsuRI	GGCC	1 cut(s)	248
BtsCI	GGATG	1 cut(s)	153
BtsIMutI	CAGTG	1 cut(s)	161
BveI	ACCTGC	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	246
CviAII	CATG	2 cut(s)	238, 258
CviJI	RGCY	4 cut(s)	68, 112, 139, 248
CviKI_1	RGCY	4 cut(s)	68, 112, 139, 248
Eco130I	CCWWGG	1 cut(s)	177
Eco32I	GATATC	1 cut(s)	52
EcoRV	GATATC	1 cut(s)	52
EcoT14I	CCWWGG	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	2 cut(s)	241, 261
FaiI	YATR	3 cut(s)	239, 243, 259
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	2 cut(s)	237, 257
FokI	GGATG	1 cut(s)	140
HaeIII	GGCC	1 cut(s)	248
HapII	CCGG	2 cut(s)	113, 197
Hin1II	CATG	2 cut(s)	241, 261
HpaII	CCGG	2 cut(s)	113, 197
HphI	GGTGA	2 cut(s)	32, 212
Hpy166II	GTNNAC	1 cut(s)	203
Hpy8I	GTNNAC	1 cut(s)	203
HpyCH4III	ACNGT	1 cut(s)	165
HpyCH4V	TGCA	4 cut(s)	23, 30, 161, 237
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
Hsp92II	CATG	2 cut(s)	241, 261
LpnPI	CCDG	8 cut(s)	40, 81, 108, 126, 156, 171, 201, 210
MboII	GAAGA	1 cut(s)	176
MluCI	AATT	2 cut(s)	32, 225
MnlI	CCTC	2 cut(s)	109, 150
MseI	TTAA	1 cut(s)	171
MspI	CCGG	2 cut(s)	113, 197
MspR9I	CCNGG	1 cut(s)	198
MwoI	GCNNNNNNNGC	1 cut(s)	254
NciI	CCSGG	1 cut(s)	198
NlaIII	CATG	2 cut(s)	241, 261
NlaIV	GGNNCC	1 cut(s)	247
NmeAIII	GCCGAG	1 cut(s)	94
NspI	RCATGY	1 cut(s)	241
PspN4I	GGNNCC	1 cut(s)	247
PspPI	GGNCC	1 cut(s)	246
SaqAI	TTAA	1 cut(s)	171
Sau96I	GGNCC	1 cut(s)	246
ScrFI	CCNGG	1 cut(s)	198
SetI	ASST	2 cut(s)	29, 225
Sse9I	AATT	2 cut(s)	32, 225
StyD4I	CCNGG	1 cut(s)	196
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	1 cut(s)	165
TasI	AATT	2 cut(s)	32, 225
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TscAI	CASTG	1 cut(s)	168
TspDTI	ATGAA	3 cut(s)	26, 138, 142
TspRI	CASTG	1 cut(s)	168
XapI	RAATTY	1 cut(s)	32
XceI	RCATGY	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.