Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000820

Physical Location & Seq

Genomic Coordinates Reverse (-)

17362676 .. 17378204

Gene Structure 15529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG161600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1776 bp

ATGGCGAGCCATCTCTTCACCTACGGAGCCGCCCAATCAGCTCCAGCTCCCACTCCTGCTCTCTCCACTGTCTACACCCCTCGCTCCCTAGCCCAATCCTACCTCTCCGACCCGACCCACCGCTACCTTTCCGGGTCGGACCCTCTCTCCACTTCCTCCATGTACCTCGCCGGCACCGACGGCCTCGGCGCTTACTCCGACGCCGCCAGAGCGACGTCGTATATGATGTCCTCCTGGCCCGCCCCCGATGCCGAACCCGGCCCGCCCGGCTTCAAACGCACCTCTGAAGCACTCTACCATCAGGCTCTTTTGGGTGCCCATAATCCGATTGGGCAAATGGAAGCTTGGTATTCAACAAATTCTTTAGCAAAGCGACCTAGATTCGAGAATACAAGCTTGCCTATTTATCCACAGAGGCCAGGAGAGAAAGATTGTGTCCACTATATGCAAACAAGAACCTGTAAATTTGGAGAGGGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGATGGTGGAATCCAAGATTGGAAAGAGGTTCCACTTGTTGCTCCAAGTGAGTCCCTTCCCGAGAGACCTGGAGCGCCAGATTGTCCGTACTTTTTAAAAACTCAAAGATGCAAGTTTGGTCTTAGATGCAAGTTTAATCATCCAAAGGACAAACTGGCCACTGCGGGCGCTTCAGAAAATGGTGATGTTTATGCCTTACCCGAGAGGCCTTCTGAACCTGCATGTGCATTCTACTTGAAAACTGGGCAATGCAAGTATGGTGCAACCTGCAAATTTAATCACCCAAAAGACATCCAGATACCATCAGCCACTCAAGAGAATAAATCTGGCGAAACTGAGACAGATCTTAAGACGGAGGGCAGTGAAGTTGCTGTGAAGCCTCTTGTTTCATTCACTCCAGCACTATTATATAACTCCAAAGAGCTTCCTGTAAGACCGGGTGAAGCTGATTGTCCATTCTACCTGAAAACTGGAAGCTGCAAGTATGGGGCCACTTGCCGGTACAATCACCCTGATAGATATGATATCAATCCACCTGTTGCTGCAATCAGCTATCCTCTTTCGGCGCCTTCAGTTGCAGGTTTTAACATAGGAGTTGCTAATCCAGCTGCCTTCACTTATCAAACTTTGGCACAACCAACGGTGCTCTCCATGACACTGCCCTTTGGAGCTGTTTGTGGCGCTGGTGAAGATGACGCTCCAGCTCCCACCTCTGCTCTCTCCACCGTCTACACCCCCCGCTCCCTAGCCCAATCCTACCTCTCCGACCAGGCCCACGCTACTTTTCTGGGTCGAACCCTCTCTCCACTTCCTCCATGTACCTCGCCGGCACCGACGGCCTCGGCCGCTAGAGCGACGTCGTATATGATGTCCTCCTGGCCCGCCCCGGATGCCAAACCCGGCCCGCCCGGCTTCAAACGCACCTCTGAAGGGCATTTATGTGATTTGGATATGGTCCTGCGTGTATCTTCAAGATGCTGTGGAGCTACCTTGAAGCTAAAGATCAACTGGCCAGATTGCTTGCAGGGTTCTACTGTTAGGCAAGTGGAGAAGCAAAGAGAGGGTTCGGATTTGCAGACGCTGCTCCGGAGATTCTGGAAGAGAGGCGGTGCCGTACTGGTCCTCCGACCACAAGGTCCAGGTCATGATGCAGCTGGGAGGAGTCTTCCTTCTCATCTCGCCACCACCGGGATCAGCGTCGGCTTCAATATTCTGGGTCGGGACTTCCCCAATGCCCTTGCCAGTCAGTTCCTCTCTGTCTCTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001709 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0032502 GO:0034248 GO:0034249 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045165 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048869 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1903311 GO:1903313 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

591

Amino Acids

63.65

Weight (kDa)

8.42

Isoelectric Point (pI)

48.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	141 - 165	4.9e-06	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH	PF00642	193 - 218	3.2e-08	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH	PF00642	241 - 265	5.7e-10	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH	PF00642	316 - 340	6e-10	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_DUS3L	PF25585	317 - 339	7.9e-07	DUS3L CCCH zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12680
fragaria_vesca	FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640
malus_domestica	MD03G1280400.v1.1 MD06G1158700.v1.1 MD06G1158900.v1.1 MD06G1159100.v1.1 MD10G1219700.v1.1
prunus_persica	Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.7G013500_v2.0.a1 Prupe.8G067100_v2.0.a1
pyrus_communis	pycom06g14160 pycom06g14170 pycom10g18590
rosa_chinensis	RchiOBHm_Chr5g0022551 RchiOBHm_Chr5g0022581 RchiOBHm_Chr5g0022611 RchiOBHm_Chr5g0022711 RchiOBHm_Chr5g0022731 RchiOBHm_Chr5g0022751 RchiOBHm_Chr5g0022761 RchiOBHm_Chr5g0022841 RchiOBHm_Chr5g0022861 RchiOBHm_Chr5g0022911
rosa_laevigata	RLG00000032672 RLG00000032674 RLG00000032675 RLG00000032677 RLG00000032679 RLG00000035293
rosa_multiflora	Rmu_sc0000401.1_g000006 Rmu_sc0000401.1_g000007 Rmu_sc0000401.1_g000014 Rmu_sc0000401.1_g000026 Rmu_sc0000401.1_g000028 Rmu_sc0010181.1_g000001 Rmu_sc0010181.1_g000004 Rmu_sc0010181.1_g000009 Rmu_sc0042157.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056450 Rroxscaffold_1G00056490
rosa_rugosa	Rorug05G0075100
rosa_samantha	Rh5AG161600 Rh5BG099400 Rh5BG160400 Rh5BG160700 Rh5CG175100 Rh5DG161100 Rh5DG161300 Rh5DG161500 Rh5DG161600 Rh5DG161700 Rh5DG161900 Rh5DG162000 Rh5DG162400
rosa_wichuraiana	Rw5G014410 Rw5G014450 Rw5G014490 Rw5G014510 Rw5G014540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1641
AatII	GACGTC	2 cut(s)	218, 1367
Acc36I	ACCTGC	3 cut(s)	733, 782, 1076
AccB1I	GGYRCC	5 cut(s)	173, 314, 1072, 1336, 1616
AccBSI	CCGCTC	1 cut(s)	1248
AccI	GTMKAC	2 cut(s)	72, 1236
AccIII	TCCGGA	1 cut(s)	1593
AclWI	GGATC	1 cut(s)	1706
AcoI	YGGCCR	3 cut(s)	663, 1350, 1517
AcsI	RAATTY	3 cut(s)	358, 464, 779
AcuI	CTGAAG	4 cut(s)	306, 663, 1062, 1455
AcyI	GRCGYC	4 cut(s)	201, 215, 1073, 1364
AfaI	GTAC	5 cut(s)	164, 596, 1010, 1327, 1623
AfiI	CCNNNNNNNGG	4 cut(s)	512, 1005, 1437, 1695
AflII	CTTAAG	1 cut(s)	854
AgsI	TTSAA	7 cut(s)	274, 354, 745, 1423, 1479, 1501, 1714
AjnI	CCWGG	6 cut(s)	233, 418, 574, 1275, 1382, 1645
AjuI	GAANNNNNNNTTGG	2 cut(s)	508, 540
AloI	GAACNNNNNNTCC	2 cut(s)	1294, 1326
Alw21I	GWGCWC	1 cut(s)	1155
Alw26I	GTCTC	3 cut(s)	565, 839, 1771
AlwI	GGATC	1 cut(s)	1706
AlwNI	CAGNNNCTG	1 cut(s)	1588
Ama87I	CYCGRG	2 cut(s)	566, 707
Aor13HI	TCCGGA	1 cut(s)	1593
ApeKI	GCWGC	6 cut(s)	477, 984, 1049, 1115, 1588, 1658
ApoI	RAATTY	3 cut(s)	358, 464, 779
AspLEI	GCGC	5 cut(s)	191, 583, 677, 1075, 1190
AsuC2I	CCSGG	8 cut(s)	133, 258, 267, 945, 1394, 1407, 1416, 1696
AsuHPI	GGTGA	6 cut(s)	10, 701, 779, 959, 1007, 1205
AvaI	CYCGRG	2 cut(s)	566, 707
AvaII	GGWCC	4 cut(s)	139, 1462, 1627, 1643
BaeGI	GKGCMC	1 cut(s)	319
BalI	TGGCCA	2 cut(s)	665, 1519
BanI	GGYRCC	5 cut(s)	173, 314, 1072, 1336, 1616
BbsI	GAAGAC	1 cut(s)	1664
Bbv12I	GWGCWC	1 cut(s)	1155
BbvI	GCAGC	6 cut(s)	464, 971, 1036, 1102, 1575, 1670
BccI	CCATC	5 cut(s)	18, 306, 498, 503, 817
BceAI	ACGGC	3 cut(s)	196, 1359, 1604
BciT130I	CCWGG	6 cut(s)	235, 420, 576, 1277, 1384, 1647
BcnI	CCSGG	8 cut(s)	133, 258, 267, 945, 1394, 1407, 1416, 1696
BcoDI	GTCTC	3 cut(s)	565, 839, 1771
BfaI	CTAG	5 cut(s)	89, 378, 1253, 1356, 1774
BfoI	RGCGCY	5 cut(s)	192, 584, 678, 1076, 1191
BfrI	CTTAAG	1 cut(s)	854
BfuAI	ACCTGC	3 cut(s)	733, 782, 1076
BglI	GCCNNNNNGGC	2 cut(s)	267, 1416
BglII	AGATCT	1 cut(s)	850
BisI	GCNGC	9 cut(s)	30, 204, 478, 985, 1050, 1116, 1353, 1589, 1659
BlsI	GCNGC	9 cut(s)	31, 205, 479, 986, 1051, 1117, 1354, 1590, 1660
Bme18I	GGWCC	4 cut(s)	139, 1462, 1627, 1643
BmeT110I	CYCGRG	2 cut(s)	566, 707
BmrI	ACTGGG	1 cut(s)	759
BmsI	GCATC	6 cut(s)	238, 605, 623, 1387, 1472, 1645
BmuI	ACTGGG	1 cut(s)	759
BpiI	GAAGAC	1 cut(s)	1664
BpmI	CTGGAG	4 cut(s)	27, 597, 888, 1191
BpuEI	CTTGAG	1 cut(s)	804
BpuMI	CCSGG	8 cut(s)	133, 258, 267, 945, 1394, 1407, 1416, 1696
BsaBI	GATNNNNATC	1 cut(s)	1035
BsaHI	GRCGYC	4 cut(s)	201, 215, 1073, 1364
BsaI	GGTCTC	1 cut(s)	565
BsaJI	CCNNGG	3 cut(s)	184, 1347, 1392
BsaWI	WCCGGW	1 cut(s)	1593
BsaXI	ACNNNNNCTCC	6 cut(s)	131, 161, 1294, 1324, 1614, 1644
Bsc4I	CCNNNNNNNGG	4 cut(s)	512, 1005, 1437, 1695
Bse118I	RCCGGY	3 cut(s)	170, 1005, 1333
Bse1I	ACTGG	6 cut(s)	666, 754, 982, 1520, 1629, 1749
Bse3DI	GCAATG	1 cut(s)	761
Bse8I	GATNNNNATC	1 cut(s)	1035
BseAI	TCCGGA	1 cut(s)	1593
BseBI	CCWGG	6 cut(s)	235, 420, 576, 1277, 1384, 1647
BseDI	CCNNGG	3 cut(s)	184, 1347, 1392
BseGI	GGATG	4 cut(s)	490, 646, 798, 1402
BseJI	GATNNNNATC	1 cut(s)	1035
BseLI	CCNNNNNNNGG	4 cut(s)	512, 1005, 1437, 1695
BseMI	GCAATG	1 cut(s)	761
BseMII	CTCAG	1 cut(s)	834
BseNI	ACTGG	6 cut(s)	666, 754, 982, 1520, 1629, 1749
BseRI	GAGGAG	1 cut(s)	1681
BseSI	GKGCMC	1 cut(s)	319
BseX3I	CGGCCG	1 cut(s)	1350
BseXI	GCAGC	6 cut(s)	464, 971, 1036, 1102, 1575, 1670
BseYI	CCCAGC	1 cut(s)	1661
Bsh1285I	CGRYCG	1 cut(s)	1353
BshNI	GGYRCC	5 cut(s)	173, 314, 1072, 1336, 1616
BsiEI	CGRYCG	1 cut(s)	1353
BsiHKAI	GWGCWC	1 cut(s)	1155
BsiHKCI	CYCGRG	2 cut(s)	566, 707
BslFI	GGGAC	2 cut(s)	544, 1742
BslI	CCNNNNNNNGG	4 cut(s)	512, 1005, 1437, 1695
BsmAI	GTCTC	3 cut(s)	565, 839, 1771
BsmFI	GGGAC	2 cut(s)	544, 1742
BsmI	GAATGC	1 cut(s)	734
Bso31I	GGTCTC	1 cut(s)	565
BsoBI	CYCGRG	2 cut(s)	566, 707
Bsp1286I	GDGCHC	2 cut(s)	319, 1155
Bsp13I	TCCGGA	1 cut(s)	1593
Bsp143I	GATC	3 cut(s)	850, 1509, 1698
BspCNI	CTCAG	1 cut(s)	835
BspEI	TCCGGA	1 cut(s)	1593
BspHI	TCATGA	1 cut(s)	1651
BspMI	ACCTGC	3 cut(s)	733, 782, 1076
BspPI	GGATC	1 cut(s)	1706
BspT107I	GGYRCC	5 cut(s)	173, 314, 1072, 1336, 1616
BspTI	CTTAAG	1 cut(s)	854
BspTNI	GGTCTC	1 cut(s)	565
BsrBI	CCGCTC	1 cut(s)	1248
BsrDI	GCAATG	1 cut(s)	761
BsrFI	RCCGGY	3 cut(s)	170, 1005, 1333
BsrI	ACTGG	6 cut(s)	666, 754, 982, 1520, 1629, 1749
BssAI	RCCGGY	3 cut(s)	170, 1005, 1333
BssECI	CCNNGG	3 cut(s)	184, 1347, 1392
BssMI	GATC	3 cut(s)	850, 1509, 1698
BssNI	GRCGYC	4 cut(s)	201, 215, 1073, 1364
Bst2UI	CCWGG	6 cut(s)	235, 420, 576, 1277, 1384, 1647
Bst4CI	ACNGT	4 cut(s)	70, 1150, 1234, 1543
Bst6I	CTCTTC	2 cut(s)	20, 1601
BstACI	GRCGYC	4 cut(s)	201, 215, 1073, 1364
BstAFI	CTTAAG	1 cut(s)	854
BstAPI	GCANNNNNTGC	1 cut(s)	1588
BstDEI	CTNAG	2 cut(s)	629, 843
BstF5I	GGATG	4 cut(s)	490, 646, 798, 1402
BstH2I	RGCGCY	5 cut(s)	192, 584, 678, 1076, 1191
BstHHI	GCGC	5 cut(s)	191, 583, 677, 1075, 1190
BstKTI	GATC	3 cut(s)	853, 1512, 1701
BstMAI	GTCTC	3 cut(s)	565, 839, 1771
BstMBI	GATC	3 cut(s)	850, 1509, 1698
BstMCI	CGRYCG	1 cut(s)	1353
BstNI	CCWGG	6 cut(s)	235, 420, 576, 1277, 1384, 1647
BstNSI	RCATGY	1 cut(s)	732
BstSLI	GKGCMC	1 cut(s)	319
BstV1I	GCAGC	6 cut(s)	464, 971, 1036, 1102, 1575, 1670
BstV2I	GAAGAC	1 cut(s)	1664
BstX2I	RGATCY	1 cut(s)	850
BstYI	RGATCY	1 cut(s)	850
BstZI	CGGCCG	1 cut(s)	1350
BtsCI	GGATG	4 cut(s)	490, 646, 798, 1402
BtsI	GCAGTG	3 cut(s)	666, 874, 1163
BtsIMutI	CAGTG	4 cut(s)	66, 666, 874, 1163
BveI	ACCTGC	3 cut(s)	733, 782, 1076
CaiI	CAGNNNCTG	1 cut(s)	1588
CciI	TCATGA	1 cut(s)	1651
CfoI	GCGC	5 cut(s)	191, 583, 677, 1075, 1190
Cfr10I	RCCGGY	3 cut(s)	170, 1005, 1333
CseI	GACGC	4 cut(s)	209, 1211, 1594, 1693
Csp6I	GTAC	5 cut(s)	163, 595, 1009, 1326, 1622
CviAII	CATG	5 cut(s)	160, 729, 1159, 1323, 1652
CviQI	GTAC	5 cut(s)	163, 595, 1009, 1326, 1622
DdeI	CTNAG	2 cut(s)	629, 843
DinI	GGCGCC	1 cut(s)	1074
DpnI	GATC	3 cut(s)	852, 1511, 1700
DpnII	GATC	3 cut(s)	850, 1509, 1698
DraI	TTTAAA	1 cut(s)	603
DrdI	GACNNNNNNGTC	1 cut(s)	1641
DseDI	GACNNNNNNGTC	1 cut(s)	1641
EaeI	YGGCCR	3 cut(s)	663, 1350, 1517
EagI	CGGCCG	1 cut(s)	1350
Eam1104I	CTCTTC	2 cut(s)	20, 1601
EarI	CTCTTC	2 cut(s)	20, 1601
EclXI	CGGCCG	1 cut(s)	1350
Eco147I	AGGCCT	1 cut(s)	715
Eco31I	GGTCTC	1 cut(s)	565
Eco32I	GATATC	1 cut(s)	1033
Eco47I	GGWCC	4 cut(s)	139, 1462, 1627, 1643
Eco52I	CGGCCG	1 cut(s)	1350
Eco57I	CTGAAG	4 cut(s)	306, 663, 1062, 1455
Eco88I	CYCGRG	2 cut(s)	566, 707
EcoRII	CCWGG	6 cut(s)	233, 418, 574, 1275, 1382, 1645
EcoRV	GATATC	1 cut(s)	1033
EgeI	GGCGCC	1 cut(s)	1074
EheI	GGCGCC	1 cut(s)	1074
FaeI	CATG	5 cut(s)	163, 732, 1162, 1326, 1655
FaqI	GGGAC	2 cut(s)	544, 1742
FatI	CATG	5 cut(s)	159, 728, 1158, 1322, 1651
FauI	CCCGC	6 cut(s)	247, 270, 664, 1253, 1396, 1419
FblI	GTMKAC	2 cut(s)	72, 1236
Fnu4HI	GCNGC	9 cut(s)	30, 204, 478, 985, 1050, 1116, 1353, 1589, 1659
FokI	GGATG	4 cut(s)	477, 633, 785, 1409
Fsp4HI	GCNGC	9 cut(s)	30, 204, 478, 985, 1050, 1116, 1353, 1589, 1659
FspBI	CTAG	5 cut(s)	89, 378, 1253, 1356, 1774
GlaI	GCGC	5 cut(s)	190, 582, 676, 1074, 1189
GluI	GCNGC	9 cut(s)	30, 204, 478, 985, 1050, 1116, 1353, 1589, 1659
GsaI	CCCAGC	1 cut(s)	1665
GsuI	CTGGAG	4 cut(s)	27, 597, 888, 1191
HaeII	RGCGCY	5 cut(s)	192, 584, 678, 1076, 1191
HgaI	GACGC	4 cut(s)	209, 1211, 1594, 1693
HhaI	GCGC	5 cut(s)	191, 583, 677, 1075, 1190
Hin1I	GRCGYC	4 cut(s)	201, 215, 1073, 1364
Hin1II	CATG	5 cut(s)	163, 732, 1162, 1326, 1655
Hin6I	GCGC	5 cut(s)	189, 581, 675, 1073, 1188
HinP1I	GCGC	5 cut(s)	189, 581, 675, 1073, 1188
HindIII	AAGCTT	2 cut(s)	342, 394
HinfI	GANTC	5 cut(s)	381, 516, 557, 1599, 1669
HphI	GGTGA	6 cut(s)	10, 701, 779, 959, 1007, 1205
Hpy166II	GTNNAC	3 cut(s)	73, 439, 1237
Hpy8I	GTNNAC	3 cut(s)	73, 439, 1237
Hpy99I	CGWCG	8 cut(s)	182, 203, 217, 220, 1345, 1366, 1369, 1709
HpyAV	CCTTC	6 cut(s)	572, 726, 1086, 1129, 1430, 1686
HpyCH4III	ACNGT	4 cut(s)	70, 1150, 1234, 1543
HpyCH4IV	ACGT	2 cut(s)	215, 1364
HpyF3I	CTNAG	2 cut(s)	629, 843
HpySE526I	ACGT	2 cut(s)	215, 1364
Hsp92I	GRCGYC	4 cut(s)	201, 215, 1073, 1364
Hsp92II	CATG	5 cut(s)	163, 732, 1162, 1326, 1655
HspAI	GCGC	5 cut(s)	189, 581, 675, 1073, 1188
KasI	GGCGCC	1 cut(s)	1072
Kpn2I	TCCGGA	1 cut(s)	1593
KroI	GCCGGC	2 cut(s)	170, 1333
KroNI	GCCGGC	2 cut(s)	172, 1335
Kzo9I	GATC	3 cut(s)	850, 1509, 1698
Lsp1109I	GCAGC	6 cut(s)	464, 971, 1036, 1102, 1575, 1670
LweI	GCATC	6 cut(s)	238, 605, 623, 1387, 1472, 1645
MaeI	CTAG	5 cut(s)	89, 378, 1253, 1356, 1774
MaeII	ACGT	2 cut(s)	215, 1364
MalI	GATC	3 cut(s)	852, 1511, 1700
MbiI	CCGCTC	1 cut(s)	1248
MboI	GATC	3 cut(s)	850, 1509, 1698
MboII	GAAGA	5 cut(s)	7, 1208, 1467, 1618, 1664
MflI	RGATCY	1 cut(s)	850
MhlI	GDGCHC	2 cut(s)	319, 1155
MlsI	TGGCCA	2 cut(s)	665, 1519
MluCI	AATT	3 cut(s)	358, 464, 779
MluNI	TGGCCA	2 cut(s)	665, 1519
Mly113I	GGCGCC	1 cut(s)	1073
MlyI	GAGTC	2 cut(s)	566, 1678
MmeI	TCCRAC	5 cut(s)	117, 132, 222, 1296, 1657
Mox20I	TGGCCA	2 cut(s)	665, 1519
MroI	TCCGGA	1 cut(s)	1593
MroNI	GCCGGC	2 cut(s)	170, 1333
MscI	TGGCCA	2 cut(s)	665, 1519
MseI	TTAA	5 cut(s)	602, 642, 783, 855, 1092
MslI	CAYNNNNRTG	1 cut(s)	1446
Msp20I	TGGCCA	2 cut(s)	665, 1519
MspA1I	CMGCKG	2 cut(s)	1115, 1661
MspCI	CTTAAG	1 cut(s)	854
Mva1269I	GAATGC	1 cut(s)	734
MvaI	CCWGG	6 cut(s)	235, 420, 576, 1277, 1384, 1647
NaeI	GCCGGC	2 cut(s)	172, 1335
NarI	GGCGCC	1 cut(s)	1073
NciI	CCSGG	8 cut(s)	133, 258, 267, 945, 1394, 1407, 1416, 1696
NdeII	GATC	3 cut(s)	850, 1509, 1698
NgoMIV	GCCGGC	2 cut(s)	170, 1333
NlaIII	CATG	5 cut(s)	163, 732, 1162, 1326, 1655
NmeAIII	GCCGAG	2 cut(s)	165, 1328
NspI	RCATGY	1 cut(s)	732
PagI	TCATGA	1 cut(s)	1651
PceI	AGGCCT	1 cut(s)	715
PcsI	WCGNNNNNNNCGW	2 cut(s)	174, 1337
PctI	GAATGC	1 cut(s)	734
PdiI	GCCGGC	2 cut(s)	172, 1335
PfeI	GAWTC	3 cut(s)	381, 516, 1599
PkrI	GCNGC	9 cut(s)	31, 205, 479, 986, 1051, 1117, 1354, 1590, 1660
PleI	GAGTC	2 cut(s)	565, 1677
PluTI	GGCGCC	1 cut(s)	1076
PpsI	GAGTC	2 cut(s)	565, 1677
Psp6I	CCWGG	6 cut(s)	233, 418, 574, 1275, 1382, 1645
PspFI	CCCAGC	1 cut(s)	1661
PspGI	CCWGG	6 cut(s)	233, 418, 574, 1275, 1382, 1645
PstNI	CAGNNNCTG	1 cut(s)	1588
PsuI	RGATCY	1 cut(s)	850
PvuII	CAGCTG	2 cut(s)	1115, 1661
RsaI	GTAC	5 cut(s)	164, 596, 1010, 1327, 1623
RsaNI	GTAC	5 cut(s)	163, 595, 1009, 1326, 1622
RseI	CAYNNNNRTG	1 cut(s)	1446
SaqAI	TTAA	5 cut(s)	602, 642, 783, 855, 1092
SatI	GCNGC	9 cut(s)	30, 204, 478, 985, 1050, 1116, 1353, 1589, 1659
Sau3AI	GATC	3 cut(s)	850, 1509, 1698
SchI	GAGTC	2 cut(s)	566, 1678
SduI	GDGCHC	2 cut(s)	319, 1155
SfaNI	GCATC	6 cut(s)	238, 605, 623, 1387, 1472, 1645
SfoI	GGCGCC	1 cut(s)	1074
SinI	GGWCC	4 cut(s)	139, 1462, 1627, 1643
SmiMI	CAYNNNNRTG	1 cut(s)	1446
SmlI	CTYRAG	2 cut(s)	819, 854
SmoI	CTYRAG	2 cut(s)	819, 854
Sse9I	AATT	3 cut(s)	358, 464, 779
SseBI	AGGCCT	1 cut(s)	715
SspDI	GGCGCC	1 cut(s)	1072
SspI	AATATT	1 cut(s)	1717
SspMI	CTAG	5 cut(s)	89, 378, 1253, 1356, 1774
StuI	AGGCCT	1 cut(s)	715
TaaI	ACNGT	4 cut(s)	70, 1150, 1234, 1543
TaiI	ACGT	2 cut(s)	218, 1367
TaqI	TCGA	2 cut(s)	384, 1300
TasI	AATT	3 cut(s)	358, 464, 779
TauI	GCSGC	3 cut(s)	32, 206, 1355
TfiI	GAWTC	3 cut(s)	381, 516, 1599
Tru1I	TTAA	5 cut(s)	602, 642, 783, 855, 1092
Tru9I	TTAA	5 cut(s)	602, 642, 783, 855, 1092
TscAI	CASTG	4 cut(s)	73, 673, 874, 1170
TseI	GCWGC	6 cut(s)	477, 984, 1049, 1115, 1588, 1658
TspDTI	ATGAA	1 cut(s)	885
TspGWI	ACGGA	3 cut(s)	39, 582, 875
TspRI	CASTG	4 cut(s)	73, 673, 874, 1170
Vha464I	CTTAAG	1 cut(s)	854
VpaK11BI	GGWCC	4 cut(s)	139, 1462, 1627, 1643
XapI	RAATTY	3 cut(s)	358, 464, 779
XceI	RCATGY	1 cut(s)	732
XcmI	CCANNNNNNNNNTGG	1 cut(s)	326
XmiI	GTMKAC	2 cut(s)	72, 1236
XspI	CTAG	5 cut(s)	89, 378, 1253, 1356, 1774
ZraI	GACGTC	2 cut(s)	216, 1365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.