Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000820

Physical Location & Seq

Genomic Coordinates Reverse (-)

17729996 .. 17730373

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032677

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGCCACTACTACTCGCGACAGAAACGACGCCGCTTCATGGCGTGGTTCTGCTGCGGCGTCTAACTCTGTACCGCCACCACCTCCTCCTCTTCTTCTTATACTCAAATCATCAATGGCGAGCCATCTCTTCACCTACGGCACCGCCCAATCAGCTCCAGCTCCCACTCCTGCTCTCTCCACCGTCTACGCCCCCCGCTCCCTAGCCCAATCCTACCTCTCCGACCCGGCCCACAGCTACCTTTCCGGGTCGGACCCTCTCTCCACCTCCTCCATGTACCTCTCCGGCACCGACGGCCTCGTCGCTTACTCCGACGTCGCTCTGGCGACGTCGTATATGATGTCCTCCTGGCCCGCCCGGCTTCAAACGCACCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001709 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0032502 GO:0034248 GO:0034249 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045165 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048869 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1903311 GO:1903313 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

126

Amino Acids

13.11

Weight (kDa)

6.81

Isoelectric Point (pI)

56.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12680
fragaria_vesca	FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640
malus_domestica	MD03G1280400.v1.1 MD06G1158700.v1.1 MD06G1158900.v1.1 MD06G1159100.v1.1 MD10G1219700.v1.1
prunus_persica	Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.7G013500_v2.0.a1 Prupe.8G067100_v2.0.a1
pyrus_communis	pycom06g14160 pycom06g14170 pycom10g18590
rosa_chinensis	RchiOBHm_Chr5g0022551 RchiOBHm_Chr5g0022581 RchiOBHm_Chr5g0022611 RchiOBHm_Chr5g0022711 RchiOBHm_Chr5g0022731 RchiOBHm_Chr5g0022751 RchiOBHm_Chr5g0022761 RchiOBHm_Chr5g0022841 RchiOBHm_Chr5g0022861 RchiOBHm_Chr5g0022911
rosa_laevigata	RLG00000032672 RLG00000032674 RLG00000032675 RLG00000032677 RLG00000032679 RLG00000035293
rosa_multiflora	Rmu_sc0000401.1_g000006 Rmu_sc0000401.1_g000007 Rmu_sc0000401.1_g000014 Rmu_sc0000401.1_g000026 Rmu_sc0000401.1_g000028 Rmu_sc0010181.1_g000001 Rmu_sc0010181.1_g000004 Rmu_sc0010181.1_g000009 Rmu_sc0042157.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056450 Rroxscaffold_1G00056490
rosa_rugosa	Rorug05G0075100
rosa_samantha	Rh5AG161600 Rh5BG099400 Rh5BG160400 Rh5BG160700 Rh5CG175100 Rh5DG161100 Rh5DG161300 Rh5DG161500 Rh5DG161600 Rh5DG161700 Rh5DG161900 Rh5DG162000 Rh5DG162400
rosa_wichuraiana	Rw5G014410 Rw5G014450 Rw5G014490 Rw5G014510 Rw5G014540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	299
AatII	GACGTC	2 cut(s)	318, 332
AccB1I	GGYRCC	2 cut(s)	140, 287
AccBSI	CCGCTC	1 cut(s)	198
AccI	GTMKAC	1 cut(s)	186
AccII	CGCG	1 cut(s)	18
AciI	CCGC	6 cut(s)	33, 56, 74, 144, 196, 354
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	4 cut(s)	30, 59, 315, 329
AfaI	GTAC	2 cut(s)	72, 278
AfiI	CCNNNNNNNGG	1 cut(s)	39
AgsI	TTSAA	1 cut(s)	365
AjnI	CCWGG	1 cut(s)	347
AluBI	AGCT	3 cut(s)	155, 161, 237
AluI	AGCT	3 cut(s)	155, 161, 237
AoxI	GGCC	4 cut(s)	3, 228, 295, 350
ApeKI	GCWGC	1 cut(s)	53
AspS9I	GGNCC	3 cut(s)	229, 253, 351
AsuC2I	CCSGG	3 cut(s)	227, 247, 358
AsuHPI	GGTGA	1 cut(s)	124
AvaII	GGWCC	1 cut(s)	253
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	140, 287
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	1 cut(s)	132
BceAI	ACGGC	2 cut(s)	154, 310
BciT130I	CCWGG	1 cut(s)	349
BcnI	CCSGG	3 cut(s)	227, 247, 358
BfaI	CTAG	1 cut(s)	203
BglI	GCCNNNNNGGC	1 cut(s)	358
BisI	GCNGC	3 cut(s)	33, 54, 57
BlsI	GCNGC	3 cut(s)	34, 55, 58
Bme1390I	CCNGG	4 cut(s)	227, 247, 349, 358
Bme18I	GGWCC	1 cut(s)	253
BmgT120I	GGNCC	3 cut(s)	229, 253, 351
BmiI	GGNNCC	3 cut(s)	142, 255, 289
BmrFI	CCNGG	4 cut(s)	227, 247, 349, 358
BpmI	CTGGAG	1 cut(s)	141
BpuMI	CCSGG	3 cut(s)	227, 247, 358
BsaHI	GRCGYC	4 cut(s)	30, 59, 315, 329
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
BseBI	CCWGG	1 cut(s)	349
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseRI	GAGGAG	3 cut(s)	75, 78, 259
BseXI	GCAGC	1 cut(s)	40
Bsh1236I	CGCG	1 cut(s)	18
BshFI	GGCC	4 cut(s)	5, 230, 297, 352
BshNI	GGYRCC	2 cut(s)	140, 287
BsiSI	CCGG	4 cut(s)	227, 246, 285, 358
BslI	CCNNNNNNNGG	1 cut(s)	39
BsnI	GGCC	4 cut(s)	5, 230, 297, 352
Bsp68I	TCGCGA	1 cut(s)	18
BspACI	CCGC	6 cut(s)	33, 56, 74, 144, 196, 354
BspANI	GGCC	4 cut(s)	5, 230, 297, 352
BspFNI	CGCG	1 cut(s)	18
BspLI	GGNNCC	3 cut(s)	142, 255, 289
BspT107I	GGYRCC	2 cut(s)	140, 287
BsrBI	CCGCTC	1 cut(s)	198
BssNI	GRCGYC	4 cut(s)	30, 59, 315, 329
Bst2UI	CCWGG	1 cut(s)	349
Bst4CI	ACNGT	1 cut(s)	184
Bst6I	CTCTTC	2 cut(s)	96, 134
BstACI	GRCGYC	4 cut(s)	30, 59, 315, 329
BstC8I	GCNNGC	2 cut(s)	121, 354
BstFNI	CGCG	1 cut(s)	18
BstMWI	GCNNNNNNNGC	4 cut(s)	152, 294, 358, 367
BstNI	CCWGG	1 cut(s)	349
BstSCI	CCNGG	4 cut(s)	225, 245, 347, 356
BstUI	CGCG	1 cut(s)	18
BstV1I	GCAGC	1 cut(s)	40
BsuRI	GGCC	4 cut(s)	5, 230, 297, 352
BtuMI	TCGCGA	1 cut(s)	18
Cac8I	GCNNGC	2 cut(s)	121, 354
Cfr13I	GGNCC	3 cut(s)	229, 253, 351
CseI	GACGC	2 cut(s)	38, 48
Csp6I	GTAC	2 cut(s)	71, 277
CviAII	CATG	2 cut(s)	39, 274
CviQI	GTAC	2 cut(s)	71, 277
DrdI	GACNNNNNNGTC	1 cut(s)	299
DseDI	GACNNNNNNGTC	1 cut(s)	299
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	96, 134
EarI	CTCTTC	2 cut(s)	96, 134
Eco47I	GGWCC	1 cut(s)	253
EcoRII	CCWGG	1 cut(s)	347
FaeI	CATG	2 cut(s)	42, 277
FaiI	YATR	5 cut(s)	40, 101, 275, 336, 338
FatI	CATG	2 cut(s)	38, 273
FauI	CCCGC	2 cut(s)	203, 361
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	3 cut(s)	33, 54, 57
Fsp4HI	GCNGC	3 cut(s)	33, 54, 57
FspBI	CTAG	1 cut(s)	203
GluI	GCNGC	3 cut(s)	33, 54, 57
GsuI	CTGGAG	1 cut(s)	141
HaeIII	GGCC	4 cut(s)	5, 230, 297, 352
HapII	CCGG	4 cut(s)	227, 246, 285, 358
HgaI	GACGC	2 cut(s)	38, 48
Hin1I	GRCGYC	4 cut(s)	30, 59, 315, 329
Hin1II	CATG	2 cut(s)	42, 277
HpaII	CCGG	4 cut(s)	227, 246, 285, 358
HphI	GGTGA	1 cut(s)	124
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	4 cut(s)	223, 253, 313, 377
Hpy188III	TCNNGA	1 cut(s)	17
Hpy8I	GTNNAC	1 cut(s)	187
Hpy99I	CGWCG	7 cut(s)	32, 296, 305, 317, 320, 331, 334
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4IV	ACGT	2 cut(s)	315, 329
HpyF10VI	GCNNNNNNNGC	4 cut(s)	152, 294, 358, 367
HpySE526I	ACGT	2 cut(s)	315, 329
Hsp92I	GRCGYC	4 cut(s)	30, 59, 315, 329
Hsp92II	CATG	2 cut(s)	42, 277
LmnI	GCTCC	3 cut(s)	160, 166, 203
LpnPI	CCDG	9 cut(s)	171, 183, 240, 259, 298, 308, 334, 361, 371
Lsp1109I	GCAGC	1 cut(s)	40
MaeI	CTAG	1 cut(s)	203
MaeII	ACGT	2 cut(s)	315, 329
MbiI	CCGCTC	1 cut(s)	198
MboII	GAAGA	3 cut(s)	83, 86, 121
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	3 cut(s)	231, 246, 336
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	4 cut(s)	227, 246, 285, 358
MspR9I	CCNGG	4 cut(s)	227, 247, 349, 358
MvaI	CCWGG	1 cut(s)	349
MvnI	CGCG	1 cut(s)	18
MwoI	GCNNNNNNNGC	4 cut(s)	152, 294, 358, 367
NciI	CCSGG	3 cut(s)	227, 247, 358
NlaIII	CATG	2 cut(s)	42, 277
NlaIV	GGNNCC	3 cut(s)	142, 255, 289
NruI	TCGCGA	1 cut(s)	18
PcsI	WCGNNNNNNNCGW	1 cut(s)	309
PkrI	GCNGC	3 cut(s)	34, 55, 58
Psp6I	CCWGG	1 cut(s)	347
PspGI	CCWGG	1 cut(s)	347
PspN4I	GGNNCC	3 cut(s)	142, 255, 289
PspPI	GGNCC	3 cut(s)	229, 253, 351
RruI	TCGCGA	1 cut(s)	18
RsaI	GTAC	2 cut(s)	72, 278
RsaNI	GTAC	2 cut(s)	71, 277
SatI	GCNGC	3 cut(s)	33, 54, 57
Sau96I	GGNCC	3 cut(s)	229, 253, 351
ScrFI	CCNGG	4 cut(s)	227, 247, 349, 358
SinI	GGWCC	1 cut(s)	253
SsiI	CCGC	6 cut(s)	33, 56, 74, 144, 196, 354
SspMI	CTAG	1 cut(s)	203
StyD4I	CCNGG	4 cut(s)	225, 245, 347, 356
TaaI	ACNGT	1 cut(s)	184
TaiI	ACGT	2 cut(s)	318, 332
TauI	GCSGC	2 cut(s)	35, 59
TseI	GCWGC	1 cut(s)	53
TspDTI	ATGAA	1 cut(s)	27
VpaK11BI	GGWCC	1 cut(s)	253
XmiI	GTMKAC	1 cut(s)	186
XspI	CTAG	1 cut(s)	203
ZraI	GACGTC	2 cut(s)	316, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.