Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000820

Physical Location & Seq

Genomic Coordinates Reverse (-)

17426548 .. 17428334

Gene Structure 1787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G014490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGTTTAAACATTTCTACTTGAAAACTGGGCAATGCAAGTATGGTGCACCCTGCAAATTTAATCACCCAAAAGACATCCAGATACCATCAGCCACTCAAGAGAATAAATCTGGCGAAACTGAGACAGCTCTTAAGACGGAGGGCTTTGAAGTTGCCGTGAAGCCTCTTGTTTCATTCTCTCCAGCACTATTATATAACTCCAAAGAGCTTCCTGTAAGACCGGGTGAAGCTGATTGTCCATTCTACCTGAAAACTGGAAGTTGCAAGTATGGGGCCACTTGCCGGTACAATCACCCTGATAGATATGATATCAATCTACCTGTTGCTGCAATCAGCTATTCTCTTTCAGCGCCTTCAGTTGCAGGTTTTAACATGAGTTTGACCTGTTTTACTGAGAAGGTGGGAGCGAGCCCTGCTGTTTGTCCTCAGCGCTTTGGACAGGCTGTGTGTGAAATTCCATCACCCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001709 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0032502 GO:0034248 GO:0034249 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045165 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048869 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1903311 GO:1903313 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

156

Amino Acids

17.03

Weight (kDa)

8.08

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	4 - 24	8.3e-07	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH	PF00642	74 - 99	1e-10	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_DUS3L	PF25585	76 - 98	1.4e-07	DUS3L CCCH zinc finger domain
zf_CCCH_4	PF18345	79 - 98	2.7e-06	Zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12680
fragaria_vesca	FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640
malus_domestica	MD03G1280400.v1.1 MD06G1158700.v1.1 MD06G1158900.v1.1 MD06G1159100.v1.1 MD10G1219700.v1.1
prunus_persica	Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.7G013500_v2.0.a1 Prupe.8G067100_v2.0.a1
pyrus_communis	pycom06g14160 pycom06g14170 pycom10g18590
rosa_chinensis	RchiOBHm_Chr5g0022551 RchiOBHm_Chr5g0022581 RchiOBHm_Chr5g0022611 RchiOBHm_Chr5g0022711 RchiOBHm_Chr5g0022731 RchiOBHm_Chr5g0022751 RchiOBHm_Chr5g0022761 RchiOBHm_Chr5g0022841 RchiOBHm_Chr5g0022861 RchiOBHm_Chr5g0022911
rosa_laevigata	RLG00000032672 RLG00000032674 RLG00000032675 RLG00000032677 RLG00000032679 RLG00000035293
rosa_multiflora	Rmu_sc0000401.1_g000006 Rmu_sc0000401.1_g000007 Rmu_sc0000401.1_g000014 Rmu_sc0000401.1_g000026 Rmu_sc0000401.1_g000028 Rmu_sc0010181.1_g000001 Rmu_sc0010181.1_g000004 Rmu_sc0010181.1_g000009 Rmu_sc0042157.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056450 Rroxscaffold_1G00056490
rosa_rugosa	Rorug05G0075100
rosa_samantha	Rh5AG161600 Rh5BG099400 Rh5BG160400 Rh5BG160700 Rh5CG175100 Rh5DG161100 Rh5DG161300 Rh5DG161500 Rh5DG161600 Rh5DG161700 Rh5DG161900 Rh5DG162000 Rh5DG162400
rosa_wichuraiana	Rw5G014410 Rw5G014450 Rw5G014490 Rw5G014510 Rw5G014540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	353
AcsI	RAATTY	2 cut(s)	56, 453
AcuI	CTGAAG	1 cut(s)	339
AfaI	GTAC	1 cut(s)	287
AfeI	AGCGCT	1 cut(s)	431
AfiI	CCNNNNNNNGG	1 cut(s)	282
AflII	CTTAAG	1 cut(s)	131
AgsI	TTSAA	2 cut(s)	22, 149
AluBI	AGCT	4 cut(s)	128, 208, 230, 336
AluI	AGCT	4 cut(s)	128, 208, 230, 336
Alw21I	GWGCWC	1 cut(s)	49
Alw26I	GTCTC	1 cut(s)	116
Alw44I	GTGCAC	1 cut(s)	45
Aor51HI	AGCGCT	1 cut(s)	431
AoxI	GGCC	1 cut(s)	273
ApaLI	GTGCAC	1 cut(s)	45
ApeKI	GCWGC	1 cut(s)	326
ApoI	RAATTY	2 cut(s)	56, 453
AspLEI	GCGC	2 cut(s)	352, 432
AspS9I	GGNCC	1 cut(s)	273
AsuC2I	CCSGG	1 cut(s)	222
AsuHPI	GGTGA	4 cut(s)	56, 236, 284, 453
BaeGI	GKGCMC	1 cut(s)	49
BanII	GRGCYC	1 cut(s)	413
Bbv12I	GWGCWC	1 cut(s)	49
BbvCI	CCTCAGC	1 cut(s)	426
BbvI	GCAGC	1 cut(s)	313
BccI	CCATC	2 cut(s)	94, 466
BceAI	ACGGC	1 cut(s)	140
BcnI	CCSGG	1 cut(s)	222
BcoDI	GTCTC	1 cut(s)	116
BfoI	RGCGCY	2 cut(s)	353, 433
BfrI	CTTAAG	1 cut(s)	131
BfuAI	ACCTGC	1 cut(s)	353
BisI	GCNGC	1 cut(s)	327
BlsI	GCNGC	1 cut(s)	328
Bme1390I	CCNGG	1 cut(s)	222
BmgT120I	GGNCC	1 cut(s)	273
BmiI	GGNNCC	1 cut(s)	274
BmrFI	CCNGG	1 cut(s)	222
BmrI	ACTGGG	1 cut(s)	36
BmuI	ACTGGG	1 cut(s)	36
BpmI	CTGGAG	1 cut(s)	165
Bpu10I	CCTNAGC	1 cut(s)	426
BpuEI	CTTGAG	1 cut(s)	81
BpuMI	CCSGG	1 cut(s)	222
BsaBI	GATNNNNATC	1 cut(s)	312
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
Bse118I	RCCGGY	1 cut(s)	282
Bse1I	ACTGG	2 cut(s)	31, 259
Bse3DI	GCAATG	1 cut(s)	38
Bse8I	GATNNNNATC	1 cut(s)	312
BseGI	GGATG	1 cut(s)	75
BseJI	GATNNNNATC	1 cut(s)	312
BseLI	CCNNNNNNNGG	1 cut(s)	282
BseMI	GCAATG	1 cut(s)	38
BseMII	CTCAG	3 cut(s)	111, 384, 440
BseNI	ACTGG	2 cut(s)	31, 259
BseSI	GKGCMC	1 cut(s)	49
BseXI	GCAGC	1 cut(s)	313
BshFI	GGCC	1 cut(s)	275
BsiHKAI	GWGCWC	1 cut(s)	49
BsiSI	CCGG	2 cut(s)	221, 283
BslI	CCNNNNNNNGG	1 cut(s)	282
BsmAI	GTCTC	1 cut(s)	116
BsnI	GGCC	1 cut(s)	275
Bsp1286I	GDGCHC	2 cut(s)	49, 413
BspANI	GGCC	1 cut(s)	275
BspCNI	CTCAG	3 cut(s)	112, 385, 439
BspLI	GGNNCC	1 cut(s)	274
BspMI	ACCTGC	1 cut(s)	353
BspTI	CTTAAG	1 cut(s)	131
BsrDI	GCAATG	1 cut(s)	38
BsrFI	RCCGGY	1 cut(s)	282
BsrI	ACTGG	2 cut(s)	31, 259
BssAI	RCCGGY	1 cut(s)	282
BstAFI	CTTAAG	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	409
BstDEI	CTNAG	3 cut(s)	120, 393, 426
BstF5I	GGATG	1 cut(s)	75
BstH2I	RGCGCY	2 cut(s)	353, 433
BstHHI	GCGC	2 cut(s)	352, 432
BstMAI	GTCTC	1 cut(s)	116
BstMWI	GCNNNNNNNGC	1 cut(s)	413
BstSCI	CCNGG	1 cut(s)	220
BstSLI	GKGCMC	1 cut(s)	49
BstV1I	GCAGC	1 cut(s)	313
BsuRI	GGCC	1 cut(s)	275
BtsCI	GGATG	1 cut(s)	75
BveI	ACCTGC	1 cut(s)	353
Cac8I	GCNNGC	1 cut(s)	409
CfoI	GCGC	2 cut(s)	352, 432
Cfr10I	RCCGGY	1 cut(s)	282
Cfr13I	GGNCC	1 cut(s)	273
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	1 cut(s)	373
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	3 cut(s)	120, 393, 426
DraI	TTTAAA	1 cut(s)	7
Eco24I	GRGCYC	1 cut(s)	413
Eco32I	GATATC	1 cut(s)	310
Eco47III	AGCGCT	1 cut(s)	431
Eco57I	CTGAAG	1 cut(s)	339
EcoRV	GATATC	1 cut(s)	310
EcoT38I	GRGCYC	1 cut(s)	413
FaeI	CATG	1 cut(s)	376
FaiI	YATR	6 cut(s)	42, 193, 195, 270, 306, 374
FatI	CATG	1 cut(s)	372
Fnu4HI	GCNGC	1 cut(s)	327
FokI	GGATG	1 cut(s)	62
FriOI	GRGCYC	1 cut(s)	413
Fsp4HI	GCNGC	1 cut(s)	327
GlaI	GCGC	2 cut(s)	351, 431
GluI	GCNGC	1 cut(s)	327
GsuI	CTGGAG	1 cut(s)	165
HaeII	RGCGCY	2 cut(s)	353, 433
HaeIII	GGCC	1 cut(s)	275
HapII	CCGG	2 cut(s)	221, 283
HhaI	GCGC	2 cut(s)	352, 432
Hin1II	CATG	1 cut(s)	376
Hin6I	GCGC	2 cut(s)	350, 430
HinP1I	GCGC	2 cut(s)	350, 430
HpaII	CCGG	2 cut(s)	221, 283
HphI	GGTGA	4 cut(s)	56, 236, 284, 453
Hpy166II	GTNNAC	1 cut(s)	47
Hpy188III	TCNNGA	2 cut(s)	79, 98
Hpy8I	GTNNAC	1 cut(s)	47
HpyAV	CCTTC	2 cut(s)	363, 391
HpyCH4V	TGCA	6 cut(s)	36, 47, 54, 264, 329, 362
HpyF10VI	GCNNNNNNNGC	1 cut(s)	413
HpyF3I	CTNAG	3 cut(s)	120, 393, 426
Hsp92II	CATG	1 cut(s)	376
HspAI	GCGC	2 cut(s)	350, 430
LmnI	GCTCC	1 cut(s)	404
Lsp1109I	GCAGC	1 cut(s)	313
MhlI	GDGCHC	2 cut(s)	49, 413
MluCI	AATT	2 cut(s)	56, 453
MnlI	CCTC	3 cut(s)	133, 174, 435
MseI	TTAA	4 cut(s)	6, 60, 132, 369
MspCI	CTTAAG	1 cut(s)	131
MspI	CCGG	2 cut(s)	221, 283
MspR9I	CCNGG	1 cut(s)	222
MssI	GTTTAAAC	1 cut(s)	7
MwoI	GCNNNNNNNGC	1 cut(s)	413
NciI	CCSGG	1 cut(s)	222
NlaIII	CATG	1 cut(s)	376
NlaIV	GGNNCC	1 cut(s)	274
PkrI	GCNGC	1 cut(s)	328
PmeI	GTTTAAAC	1 cut(s)	7
PspN4I	GGNNCC	1 cut(s)	274
PspPI	GGNCC	1 cut(s)	273
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
SaqAI	TTAA	4 cut(s)	6, 60, 132, 369
SatI	GCNGC	1 cut(s)	327
Sau96I	GGNCC	1 cut(s)	273
ScrFI	CCNGG	1 cut(s)	222
SduI	GDGCHC	2 cut(s)	49, 413
SetI	ASST	9 cut(s)	130, 210, 232, 249, 322, 338, 367, 386, 402
SmlI	CTYRAG	2 cut(s)	96, 131
SmoI	CTYRAG	2 cut(s)	96, 131
Sse9I	AATT	2 cut(s)	56, 453
StyD4I	CCNGG	1 cut(s)	220
TasI	AATT	2 cut(s)	56, 453
Tru1I	TTAA	4 cut(s)	6, 60, 132, 369
Tru9I	TTAA	4 cut(s)	6, 60, 132, 369
TseI	GCWGC	1 cut(s)	326
TspDTI	ATGAA	1 cut(s)	162
TspGWI	ACGGA	1 cut(s)	152
Vha464I	CTTAAG	1 cut(s)	131
VneI	GTGCAC	1 cut(s)	45
XapI	RAATTY	2 cut(s)	56, 453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.