Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000820

Physical Location & Seq

Genomic Coordinates Forward (+)

9075414 .. 9081768

Gene Structure 6355 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG099400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGCCGAACCCGGCCCCCCCAGCTTCAAACGCACCTCTGAAGTATTATATGAAGATTGGGGAATGTAAGTATGGTGCACAATGCAGATTCCATCACCCGATTGATAGGCCAGCAGTGGCGTTGTCAACAACAAAGCCATCTCAACAAGAAAATGTGAAGCTAACGCTTGCTGGACTACCTAGGAGGGAGGGTGCCGTTATCTATGTGTATTGCCTTAAAACCGGCACATGCAAGTGTGGTGCAACCTGCAGATTTGACCACCCATCTCCTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001709 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0032502 GO:0034248 GO:0034249 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045165 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048869 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1903311 GO:1903313 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

91

Amino Acids

9.96

Weight (kDa)

9.3

Isoelectric Point (pI)

54.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	14 - 33	6.4e-09	Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12680
fragaria_vesca	FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640
malus_domestica	MD03G1280400.v1.1 MD06G1158700.v1.1 MD06G1158900.v1.1 MD06G1159100.v1.1 MD10G1219700.v1.1
prunus_persica	Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.7G013500_v2.0.a1 Prupe.8G067100_v2.0.a1
pyrus_communis	pycom06g14160 pycom06g14170 pycom10g18590
rosa_chinensis	RchiOBHm_Chr5g0022551 RchiOBHm_Chr5g0022581 RchiOBHm_Chr5g0022611 RchiOBHm_Chr5g0022711 RchiOBHm_Chr5g0022731 RchiOBHm_Chr5g0022751 RchiOBHm_Chr5g0022761 RchiOBHm_Chr5g0022841 RchiOBHm_Chr5g0022861 RchiOBHm_Chr5g0022911
rosa_laevigata	RLG00000032672 RLG00000032674 RLG00000032675 RLG00000032677 RLG00000032679 RLG00000035293
rosa_multiflora	Rmu_sc0000401.1_g000006 Rmu_sc0000401.1_g000007 Rmu_sc0000401.1_g000014 Rmu_sc0000401.1_g000026 Rmu_sc0000401.1_g000028 Rmu_sc0010181.1_g000001 Rmu_sc0010181.1_g000004 Rmu_sc0010181.1_g000009 Rmu_sc0042157.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056450 Rroxscaffold_1G00056490
rosa_rugosa	Rorug05G0075100
rosa_samantha	Rh5AG161600 Rh5BG099400 Rh5BG160400 Rh5BG160700 Rh5CG175100 Rh5DG161100 Rh5DG161300 Rh5DG161500 Rh5DG161600 Rh5DG161700 Rh5DG161900 Rh5DG162000 Rh5DG162400
rosa_wichuraiana	Rw5G014410 Rw5G014450 Rw5G014490 Rw5G014510 Rw5G014540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	254
AccB1I	GGYRCC	1 cut(s)	191
AcuI	CTGAAG	1 cut(s)	59
AgsI	TTSAA	1 cut(s)	27
AluBI	AGCT	2 cut(s)	23, 160
AluI	AGCT	2 cut(s)	23, 160
Alw21I	GWGCWC	1 cut(s)	79
Alw44I	GTGCAC	1 cut(s)	75
AoxI	GGCC	2 cut(s)	12, 107
ApaLI	GTGCAC	1 cut(s)	75
AspA2I	CCTAGG	1 cut(s)	179
AspS9I	GGNCC	1 cut(s)	13
AsuC2I	CCSGG	1 cut(s)	11
AsuHPI	GGTGA	1 cut(s)	86
AvrII	CCTAGG	1 cut(s)	179
BaeGI	GKGCMC	1 cut(s)	79
BanI	GGYRCC	1 cut(s)	191
Bbv12I	GWGCWC	1 cut(s)	79
BccI	CCATC	3 cut(s)	99, 145, 271
BceAI	ACGGC	1 cut(s)	179
BcnI	CCSGG	1 cut(s)	11
BfaI	CTAG	1 cut(s)	180
BfmI	CTRYAG	1 cut(s)	247
BfuAI	ACCTGC	1 cut(s)	254
BlnI	CCTAGG	1 cut(s)	179
Bme1390I	CCNGG	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	13
BmiI	GGNNCC	2 cut(s)	15, 193
BmrFI	CCNGG	1 cut(s)	11
BpuMI	CCSGG	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	179
BsaXI	ACNNNNNCTCC	2 cut(s)	175, 205
Bse118I	RCCGGY	1 cut(s)	221
BseDI	CCNNGG	1 cut(s)	179
BseSI	GKGCMC	1 cut(s)	79
BseYI	CCCAGC	1 cut(s)	19
BshFI	GGCC	2 cut(s)	14, 109
BshNI	GGYRCC	1 cut(s)	191
BsiHKAI	GWGCWC	1 cut(s)	79
BsiSI	CCGG	2 cut(s)	11, 222
BsnI	GGCC	2 cut(s)	14, 109
Bsp1286I	GDGCHC	1 cut(s)	79
BspANI	GGCC	2 cut(s)	14, 109
BspLI	GGNNCC	2 cut(s)	15, 193
BspMAI	CTGCAG	1 cut(s)	251
BspMI	ACCTGC	1 cut(s)	254
BspT107I	GGYRCC	1 cut(s)	191
BsrFI	RCCGGY	1 cut(s)	221
BssAI	RCCGGY	1 cut(s)	221
BssECI	CCNNGG	1 cut(s)	179
BssT1I	CCWWGG	1 cut(s)	179
BstC8I	GCNNGC	2 cut(s)	111, 168
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 29
BstNSI	RCATGY	1 cut(s)	231
BstSCI	CCNGG	1 cut(s)	9
BstSFI	CTRYAG	1 cut(s)	247
BstSLI	GKGCMC	1 cut(s)	79
BsuRI	GGCC	2 cut(s)	14, 109
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	120
BveI	ACCTGC	1 cut(s)	254
Cac8I	GCNNGC	2 cut(s)	111, 168
Cfr10I	RCCGGY	1 cut(s)	221
Cfr13I	GGNCC	1 cut(s)	13
CviAII	CATG	1 cut(s)	228
CviJI	RGCY	5 cut(s)	14, 23, 109, 136, 160
CviKI_1	RGCY	5 cut(s)	14, 23, 109, 136, 160
Eco130I	CCWWGG	1 cut(s)	179
Eco57I	CTGAAG	1 cut(s)	59
EcoT14I	CCWWGG	1 cut(s)	179
ErhI	CCWWGG	1 cut(s)	179
FaeI	CATG	1 cut(s)	231
FaiI	YATR	5 cut(s)	48, 50, 72, 204, 229
FatI	CATG	1 cut(s)	227
FspBI	CTAG	1 cut(s)	180
GsaI	CCCAGC	1 cut(s)	23
HaeIII	GGCC	2 cut(s)	14, 109
HapII	CCGG	2 cut(s)	11, 222
Hin1II	CATG	1 cut(s)	231
HincII	GTYRAC	1 cut(s)	126
HindII	GTYRAC	1 cut(s)	126
HinfI	GANTC	1 cut(s)	87
HpaII	CCGG	2 cut(s)	11, 222
HphI	GGTGA	1 cut(s)	86
Hpy166II	GTNNAC	2 cut(s)	77, 126
Hpy188I	TCNGA	1 cut(s)	39
Hpy8I	GTNNAC	2 cut(s)	77, 126
HpyCH4V	TGCA	5 cut(s)	77, 84, 231, 242, 249
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 29
Hsp92II	CATG	1 cut(s)	231
LpnPI	CCDG	6 cut(s)	24, 33, 123, 156, 235, 259
MaeI	CTAG	1 cut(s)	180
MboII	GAAGA	1 cut(s)	64
MhlI	GDGCHC	1 cut(s)	79
MnlI	CCTC	3 cut(s)	45, 177, 181
MseI	TTAA	2 cut(s)	216, 274
MslI	CAYNNNNRTG	1 cut(s)	232
MspI	CCGG	2 cut(s)	11, 222
MspR9I	CCNGG	1 cut(s)	11
MwoI	GCNNNNNNNGC	2 cut(s)	20, 29
NciI	CCSGG	1 cut(s)	11
NlaIII	CATG	1 cut(s)	231
NlaIV	GGNNCC	2 cut(s)	15, 193
NspI	RCATGY	1 cut(s)	231
PfeI	GAWTC	1 cut(s)	87
PspFI	CCCAGC	1 cut(s)	19
PspN4I	GGNNCC	2 cut(s)	15, 193
PspPI	GGNCC	1 cut(s)	13
PstI	CTGCAG	1 cut(s)	251
RseI	CAYNNNNRTG	1 cut(s)	232
SaqAI	TTAA	2 cut(s)	216, 274
Sau96I	GGNCC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	11
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	5 cut(s)	25, 37, 162, 181, 248
SfcI	CTRYAG	1 cut(s)	247
SmiMI	CAYNNNNRTG	1 cut(s)	232
SspMI	CTAG	1 cut(s)	180
StyD4I	CCNGG	1 cut(s)	9
StyI	CCWWGG	1 cut(s)	179
TfiI	GAWTC	1 cut(s)	87
Tru1I	TTAA	2 cut(s)	216, 274
Tru9I	TTAA	2 cut(s)	216, 274
TscAI	CASTG	1 cut(s)	120
TspDTI	ATGAA	1 cut(s)	65
TspRI	CASTG	1 cut(s)	120
VneI	GTGCAC	1 cut(s)	75
XceI	RCATGY	1 cut(s)	231
XmaJI	CCTAGG	1 cut(s)	179
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.