Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000820

Physical Location & Seq

Genomic Coordinates Reverse (-)

16839490 .. 16841978

Gene Structure 2489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30265

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGCCTCGGCCGCTAGAGCGACGTCGTATATGATGTCCTCCTGGCCCTCCCCGGATGCCGAACCCGGCCCGCCCGGCTTCAAACGCACCTCTGAAGTATTATATGAAGATTGGGAATGTAAGTATGGTGCACAATGCAGATTCCATCACCCGATTGATAGGCCAGCAGTGGCGTTGTCAACAACAAAGCTATCTCAACAAGAAAATGTGAAGCTAACGCTTGCTGGACTACCTAGGAGGGAGGGTGCCGTTATCTGTGTGTATTACCTTAAAACCGGCACATGCAAGTATGGTGCAACCTGCAGATTTGACCACCCATCTCCTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001709 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0032502 GO:0034248 GO:0034249 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045165 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048869 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1903311 GO:1903313 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

109

Amino Acids

12.09

Weight (kDa)

8.64

Isoelectric Point (pI)

51.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	84 - 106	1.2e-09	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf_CCCH_4	PF18345	86 - 105	1.4e-07	Zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12680
fragaria_vesca	FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640
malus_domestica	MD03G1280400.v1.1 MD06G1158700.v1.1 MD06G1158900.v1.1 MD06G1159100.v1.1 MD10G1219700.v1.1
prunus_persica	Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.7G013500_v2.0.a1 Prupe.8G067100_v2.0.a1
pyrus_communis	pycom06g14160 pycom06g14170 pycom10g18590
rosa_chinensis	RchiOBHm_Chr5g0022551 RchiOBHm_Chr5g0022581 RchiOBHm_Chr5g0022611 RchiOBHm_Chr5g0022711 RchiOBHm_Chr5g0022731 RchiOBHm_Chr5g0022751 RchiOBHm_Chr5g0022761 RchiOBHm_Chr5g0022841 RchiOBHm_Chr5g0022861 RchiOBHm_Chr5g0022911
rosa_laevigata	RLG00000032672 RLG00000032674 RLG00000032675 RLG00000032677 RLG00000032679 RLG00000035293
rosa_multiflora	Rmu_sc0000401.1_g000006 Rmu_sc0000401.1_g000007 Rmu_sc0000401.1_g000014 Rmu_sc0000401.1_g000026 Rmu_sc0000401.1_g000028 Rmu_sc0010181.1_g000001 Rmu_sc0010181.1_g000004 Rmu_sc0010181.1_g000009 Rmu_sc0042157.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056450 Rroxscaffold_1G00056490
rosa_rugosa	Rorug05G0075100
rosa_samantha	Rh5AG161600 Rh5BG099400 Rh5BG160400 Rh5BG160700 Rh5CG175100 Rh5DG161100 Rh5DG161300 Rh5DG161500 Rh5DG161600 Rh5DG161700 Rh5DG161900 Rh5DG162000 Rh5DG162400
rosa_wichuraiana	Rw5G014410 Rw5G014450 Rw5G014490 Rw5G014510 Rw5G014540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	26
Acc36I	ACCTGC	1 cut(s)	308
AccB1I	GGYRCC	1 cut(s)	245
AciI	CCGC	2 cut(s)	12, 71
AcoI	YGGCCR	1 cut(s)	9
AcuI	CTGAAG	1 cut(s)	114
AcyI	GRCGYC	1 cut(s)	23
AgsI	TTSAA	1 cut(s)	82
AjnI	CCWGG	1 cut(s)	41
AluBI	AGCT	2 cut(s)	190, 214
AluI	AGCT	2 cut(s)	190, 214
Alw21I	GWGCWC	1 cut(s)	133
Alw44I	GTGCAC	1 cut(s)	129
AoxI	GGCC	5 cut(s)	3, 9, 44, 67, 161
ApaLI	GTGCAC	1 cut(s)	129
AspA2I	CCTAGG	1 cut(s)	233
AspS9I	GGNCC	2 cut(s)	45, 68
AsuC2I	CCSGG	3 cut(s)	53, 66, 75
AsuHPI	GGTGA	1 cut(s)	140
AvrII	CCTAGG	1 cut(s)	233
BaeGI	GKGCMC	1 cut(s)	133
BanI	GGYRCC	1 cut(s)	245
Bbv12I	GWGCWC	1 cut(s)	133
BccI	CCATC	2 cut(s)	153, 325
BceAI	ACGGC	1 cut(s)	233
BciT130I	CCWGG	1 cut(s)	43
BcnI	CCSGG	3 cut(s)	53, 66, 75
BfaI	CTAG	2 cut(s)	15, 234
BfmI	CTRYAG	1 cut(s)	301
BfuAI	ACCTGC	1 cut(s)	308
BglI	GCCNNNNNGGC	1 cut(s)	75
BisI	GCNGC	1 cut(s)	12
BlnI	CCTAGG	1 cut(s)	233
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	4 cut(s)	43, 53, 66, 75
BmgT120I	GGNCC	2 cut(s)	45, 68
BmiI	GGNNCC	1 cut(s)	247
BmrFI	CCNGG	4 cut(s)	43, 53, 66, 75
BmsI	GCATC	1 cut(s)	46
BpuMI	CCSGG	3 cut(s)	53, 66, 75
BsaHI	GRCGYC	1 cut(s)	23
BsaJI	CCNNGG	3 cut(s)	6, 51, 233
BsaXI	ACNNNNNCTCC	2 cut(s)	229, 259
Bse118I	RCCGGY	1 cut(s)	275
BseBI	CCWGG	1 cut(s)	43
BseDI	CCNNGG	3 cut(s)	6, 51, 233
BseGI	GGATG	1 cut(s)	61
BseSI	GKGCMC	1 cut(s)	133
BseX3I	CGGCCG	1 cut(s)	9
Bsh1285I	CGRYCG	1 cut(s)	12
BshFI	GGCC	5 cut(s)	5, 11, 46, 69, 163
BshNI	GGYRCC	1 cut(s)	245
BsiEI	CGRYCG	1 cut(s)	12
BsiHKAI	GWGCWC	1 cut(s)	133
BsiSI	CCGG	4 cut(s)	53, 66, 75, 276
BsnI	GGCC	5 cut(s)	5, 11, 46, 69, 163
Bsp1286I	GDGCHC	1 cut(s)	133
BspACI	CCGC	2 cut(s)	12, 71
BspANI	GGCC	5 cut(s)	5, 11, 46, 69, 163
BspLI	GGNNCC	1 cut(s)	247
BspMAI	CTGCAG	1 cut(s)	305
BspMI	ACCTGC	1 cut(s)	308
BspT107I	GGYRCC	1 cut(s)	245
BsrFI	RCCGGY	1 cut(s)	275
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	3 cut(s)	6, 51, 233
BssNI	GRCGYC	1 cut(s)	23
BssT1I	CCWWGG	1 cut(s)	233
Bst2UI	CCWGG	1 cut(s)	43
BstACI	GRCGYC	1 cut(s)	23
BstC8I	GCNNGC	3 cut(s)	71, 165, 222
BstF5I	GGATG	1 cut(s)	61
BstMCI	CGRYCG	1 cut(s)	12
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 17, 75, 84
BstNI	CCWGG	1 cut(s)	43
BstNSI	RCATGY	1 cut(s)	285
BstSCI	CCNGG	4 cut(s)	41, 51, 64, 73
BstSFI	CTRYAG	1 cut(s)	301
BstSLI	GKGCMC	1 cut(s)	133
BstZI	CGGCCG	1 cut(s)	9
BsuRI	GGCC	5 cut(s)	5, 11, 46, 69, 163
BtsCI	GGATG	1 cut(s)	61
BtsI	GCAGTG	1 cut(s)	174
BtsIMutI	CAGTG	1 cut(s)	174
BveI	ACCTGC	1 cut(s)	308
Cac8I	GCNNGC	3 cut(s)	71, 165, 222
Cfr10I	RCCGGY	1 cut(s)	275
Cfr13I	GGNCC	2 cut(s)	45, 68
CviAII	CATG	1 cut(s)	282
CviJI	RGCY	8 cut(s)	5, 11, 46, 69, 78, 163, 190, 214
CviKI_1	RGCY	8 cut(s)	5, 11, 46, 69, 78, 163, 190, 214
EaeI	YGGCCR	1 cut(s)	9
EagI	CGGCCG	1 cut(s)	9
EclXI	CGGCCG	1 cut(s)	9
Eco130I	CCWWGG	1 cut(s)	233
Eco52I	CGGCCG	1 cut(s)	9
Eco57I	CTGAAG	1 cut(s)	114
EcoRII	CCWGG	1 cut(s)	41
EcoT14I	CCWWGG	1 cut(s)	233
ErhI	CCWWGG	1 cut(s)	233
FaeI	CATG	1 cut(s)	285
FaiI	YATR	7 cut(s)	30, 32, 103, 105, 126, 283, 291
FatI	CATG	1 cut(s)	281
FauI	CCCGC	1 cut(s)	78
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	1 cut(s)	68
Fsp4HI	GCNGC	1 cut(s)	12
FspBI	CTAG	2 cut(s)	15, 234
GluI	GCNGC	1 cut(s)	12
HaeIII	GGCC	5 cut(s)	5, 11, 46, 69, 163
HapII	CCGG	4 cut(s)	53, 66, 75, 276
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	1 cut(s)	285
HincII	GTYRAC	1 cut(s)	180
HindII	GTYRAC	1 cut(s)	180
HinfI	GANTC	1 cut(s)	141
HpaII	CCGG	4 cut(s)	53, 66, 75, 276
HphI	GGTGA	1 cut(s)	140
Hpy166II	GTNNAC	2 cut(s)	131, 180
Hpy188I	TCNGA	1 cut(s)	94
Hpy8I	GTNNAC	2 cut(s)	131, 180
Hpy99I	CGWCG	2 cut(s)	25, 28
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	5 cut(s)	131, 138, 285, 296, 303
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 17, 75, 84
HpySE526I	ACGT	1 cut(s)	23
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	1 cut(s)	285
LpnPI	CCDG	9 cut(s)	28, 55, 66, 79, 88, 177, 210, 289, 313
LweI	GCATC	1 cut(s)	46
MaeI	CTAG	2 cut(s)	15, 234
MaeII	ACGT	1 cut(s)	23
MboII	GAAGA	1 cut(s)	119
MhlI	GDGCHC	1 cut(s)	133
MnlI	CCTC	6 cut(s)	16, 49, 58, 100, 231, 235
MseI	TTAA	2 cut(s)	270, 328
MspI	CCGG	4 cut(s)	53, 66, 75, 276
MspR9I	CCNGG	4 cut(s)	43, 53, 66, 75
MvaI	CCWGG	1 cut(s)	43
MwoI	GCNNNNNNNGC	4 cut(s)	11, 17, 75, 84
NciI	CCSGG	3 cut(s)	53, 66, 75
NlaIII	CATG	1 cut(s)	285
NlaIV	GGNNCC	1 cut(s)	247
NspI	RCATGY	1 cut(s)	285
PfeI	GAWTC	1 cut(s)	141
PkrI	GCNGC	1 cut(s)	13
Psp6I	CCWGG	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	41
PspN4I	GGNNCC	1 cut(s)	247
PspPI	GGNCC	2 cut(s)	45, 68
PstI	CTGCAG	1 cut(s)	305
SaqAI	TTAA	2 cut(s)	270, 328
SatI	GCNGC	1 cut(s)	12
Sau96I	GGNCC	2 cut(s)	45, 68
ScrFI	CCNGG	4 cut(s)	43, 53, 66, 75
SduI	GDGCHC	1 cut(s)	133
SetI	ASST	7 cut(s)	26, 92, 192, 216, 235, 270, 302
SfaNI	GCATC	1 cut(s)	46
SfcI	CTRYAG	1 cut(s)	301
SsiI	CCGC	2 cut(s)	12, 71
SspMI	CTAG	2 cut(s)	15, 234
StyD4I	CCNGG	4 cut(s)	41, 51, 64, 73
StyI	CCWWGG	1 cut(s)	233
TaiI	ACGT	1 cut(s)	26
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	1 cut(s)	141
Tru1I	TTAA	2 cut(s)	270, 328
Tru9I	TTAA	2 cut(s)	270, 328
TscAI	CASTG	1 cut(s)	174
TspDTI	ATGAA	1 cut(s)	120
TspRI	CASTG	1 cut(s)	174
VneI	GTGCAC	1 cut(s)	129
XceI	RCATGY	1 cut(s)	285
XmaJI	CCTAGG	1 cut(s)	233
XspI	CTAG	2 cut(s)	15, 234
ZraI	GACGTC	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.