Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0000820

Physical Location & Seq

Genomic Coordinates Forward (+)

9900709 .. 9902699

Gene Structure 1991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G067100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGCAAATTTGGTATGAGGTGCAAGTTCAATCATCCGAAGACAAACTAGCTGCTGCTGTTGCTTCAGAAAATTCTGATGTTTTTGCCTTACCTGAGAGGCCTTCTGAACTCCCATGTGCATTCTACTTGAAAATGGGGCAATGTAAGTTTGGTCCAACCTGCAAATTTCATCATCCGAAAGATATCCAGATACCATCAGCCGAGCAAGAGAATAAAATTGGAGAAATTGGGACAACTATTCAGCTAGAGGGAACTGGATTTGCTGTGAAGCCTCCTGCACTATCATTTAACTCCAAGGGTCTTCCTGTAAGTCCGGGTGAACCCGATTGTCCATTCTACCTGAAAACTGGAAGTTGCAAGTATGGAGCCAGTTGGGCACGACTAAAGAGAACAGAAAAGGCACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001709 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0032502 GO:0034248 GO:0034249 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045165 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048869 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1903311 GO:1903313 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

136

Amino Acids

14.83

Weight (kDa)

6.81

Isoelectric Point (pI)

45.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12680
fragaria_vesca	FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640 FvH4_3g13640
malus_domestica	MD03G1280400.v1.1 MD06G1158700.v1.1 MD06G1158900.v1.1 MD06G1159100.v1.1 MD10G1219700.v1.1
prunus_persica	Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.4G124000_v2.0.a1 Prupe.7G013500_v2.0.a1 Prupe.8G067100_v2.0.a1
pyrus_communis	pycom06g14160 pycom06g14170 pycom10g18590
rosa_chinensis	RchiOBHm_Chr5g0022551 RchiOBHm_Chr5g0022581 RchiOBHm_Chr5g0022611 RchiOBHm_Chr5g0022711 RchiOBHm_Chr5g0022731 RchiOBHm_Chr5g0022751 RchiOBHm_Chr5g0022761 RchiOBHm_Chr5g0022841 RchiOBHm_Chr5g0022861 RchiOBHm_Chr5g0022911
rosa_laevigata	RLG00000032672 RLG00000032674 RLG00000032675 RLG00000032677 RLG00000032679 RLG00000035293
rosa_multiflora	Rmu_sc0000401.1_g000006 Rmu_sc0000401.1_g000007 Rmu_sc0000401.1_g000014 Rmu_sc0000401.1_g000026 Rmu_sc0000401.1_g000028 Rmu_sc0010181.1_g000001 Rmu_sc0010181.1_g000004 Rmu_sc0010181.1_g000009 Rmu_sc0042157.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056450 Rroxscaffold_1G00056490
rosa_rugosa	Rorug05G0075100
rosa_samantha	Rh5AG161600 Rh5BG099400 Rh5BG160400 Rh5BG160700 Rh5CG175100 Rh5DG161100 Rh5DG161300 Rh5DG161500 Rh5DG161600 Rh5DG161700 Rh5DG161900 Rh5DG162000 Rh5DG162400
rosa_wichuraiana	Rw5G014410 Rw5G014450 Rw5G014490 Rw5G014510 Rw5G014540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	167
AcsI	RAATTY	3 cut(s)	6, 70, 164
AcuI	CTGAAG	1 cut(s)	48
AgsI	TTSAA	2 cut(s)	29, 130
AluBI	AGCT	2 cut(s)	50, 244
AluI	AGCT	2 cut(s)	50, 244
AoxI	GGCC	1 cut(s)	98
ApeKI	GCWGC	2 cut(s)	50, 53
ApoI	RAATTY	3 cut(s)	6, 70, 164
AspS9I	GGNCC	1 cut(s)	152
AsuC2I	CCSGG	1 cut(s)	315
AsuHPI	GGTGA	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	152
BaeGI	GKGCMC	1 cut(s)	379
BbsI	GAAGAC	2 cut(s)	45, 293
BbvI	GCAGC	2 cut(s)	37, 40
BccI	CCATC	1 cut(s)	202
BcnI	CCSGG	1 cut(s)	315
BfaI	CTAG	2 cut(s)	47, 245
BfuAI	ACCTGC	1 cut(s)	167
BglI	GCCNNNNNGGC	1 cut(s)	374
BisI	GCNGC	2 cut(s)	51, 54
BlsI	GCNGC	2 cut(s)	52, 55
Bme1390I	CCNGG	1 cut(s)	315
Bme18I	GGWCC	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	152
BmiI	GGNNCC	1 cut(s)	367
BmrFI	CCNGG	1 cut(s)	315
BpiI	GAAGAC	2 cut(s)	45, 293
BpuMI	CCSGG	1 cut(s)	315
BsaJI	CCNNGG	1 cut(s)	294
Bse1I	ACTGG	3 cut(s)	259, 352, 369
Bse3DI	GCAATG	1 cut(s)	146
BseDI	CCNNGG	1 cut(s)	294
BseGI	GGATG	2 cut(s)	32, 172
BseMI	GCAATG	1 cut(s)	146
BseMII	CTCAG	1 cut(s)	84
BseNI	ACTGG	3 cut(s)	259, 352, 369
BseSI	GKGCMC	1 cut(s)	379
BseXI	GCAGC	2 cut(s)	37, 40
BsgI	GTGCAG	1 cut(s)	261
BshFI	GGCC	1 cut(s)	100
BsiSI	CCGG	1 cut(s)	314
BslFI	GGGAC	1 cut(s)	244
BsmFI	GGGAC	1 cut(s)	244
BsmI	GAATGC	1 cut(s)	119
BsnI	GGCC	1 cut(s)	100
Bsp1286I	GDGCHC	1 cut(s)	379
BspANI	GGCC	1 cut(s)	100
BspCNI	CTCAG	1 cut(s)	85
BspLI	GGNNCC	1 cut(s)	367
BspMI	ACCTGC	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	146
BsrI	ACTGG	3 cut(s)	259, 352, 369
BssECI	CCNNGG	1 cut(s)	294
BssT1I	CCWWGG	1 cut(s)	294
BstDEI	CTNAG	1 cut(s)	93
BstF5I	GGATG	2 cut(s)	32, 172
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 374
BstSCI	CCNGG	1 cut(s)	313
BstSLI	GKGCMC	1 cut(s)	379
BstV1I	GCAGC	2 cut(s)	37, 40
BstV2I	GAAGAC	2 cut(s)	45, 293
BsuRI	GGCC	1 cut(s)	100
BtsCI	GGATG	2 cut(s)	32, 172
BtsIMutI	CAGTG	1 cut(s)	403
BveI	ACCTGC	1 cut(s)	167
Cfr13I	GGNCC	1 cut(s)	152
CviAII	CATG	1 cut(s)	114
CviJI	RGCY	6 cut(s)	50, 100, 200, 244, 271, 368
CviKI_1	RGCY	6 cut(s)	50, 100, 200, 244, 271, 368
DdeI	CTNAG	1 cut(s)	93
Eco130I	CCWWGG	1 cut(s)	294
Eco147I	AGGCCT	1 cut(s)	100
Eco32I	GATATC	1 cut(s)	184
Eco47I	GGWCC	1 cut(s)	152
Eco57I	CTGAAG	1 cut(s)	48
EcoRV	GATATC	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	1 cut(s)	117
FaiI	YATR	3 cut(s)	15, 115, 363
FaqI	GGGAC	1 cut(s)	244
FatI	CATG	1 cut(s)	113
Fnu4HI	GCNGC	2 cut(s)	51, 54
FokI	GGATG	2 cut(s)	19, 159
Fsp4HI	GCNGC	2 cut(s)	51, 54
FspBI	CTAG	2 cut(s)	47, 245
GluI	GCNGC	2 cut(s)	51, 54
HaeIII	GGCC	1 cut(s)	100
HapII	CCGG	1 cut(s)	314
Hin1II	CATG	1 cut(s)	117
HpaII	CCGG	1 cut(s)	314
HphI	GGTGA	1 cut(s)	329
Hpy166II	GTNNAC	1 cut(s)	320
Hpy188I	TCNGA	5 cut(s)	37, 67, 76, 106, 177
Hpy188III	TCNNGA	1 cut(s)	187
Hpy8I	GTNNAC	1 cut(s)	320
HpyAV	CCTTC	1 cut(s)	111
HpyCH4V	TGCA	6 cut(s)	4, 22, 119, 162, 278, 357
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 374
HpyF3I	CTNAG	1 cut(s)	93
Hsp92II	CATG	1 cut(s)	117
LmnI	GCTCC	1 cut(s)	365
Lsp1109I	GCAGC	2 cut(s)	37, 40
MaeI	CTAG	2 cut(s)	47, 245
MboII	GAAGA	2 cut(s)	50, 293
MhlI	GDGCHC	1 cut(s)	379
MluCI	AATT	5 cut(s)	6, 70, 164, 216, 225
MmeI	TCCRAC	1 cut(s)	179
MnlI	CCTC	4 cut(s)	10, 90, 241, 282
MseI	TTAA	1 cut(s)	288
MspI	CCGG	1 cut(s)	314
MspR9I	CCNGG	1 cut(s)	315
Mva1269I	GAATGC	1 cut(s)	119
MwoI	GCNNNNNNNGC	2 cut(s)	59, 374
NciI	CCSGG	1 cut(s)	315
NlaIII	CATG	1 cut(s)	117
NlaIV	GGNNCC	1 cut(s)	367
NmeAIII	GCCGAG	1 cut(s)	226
PceI	AGGCCT	1 cut(s)	100
PctI	GAATGC	1 cut(s)	119
PkrI	GCNGC	2 cut(s)	52, 55
PspN4I	GGNNCC	1 cut(s)	367
PspPI	GGNCC	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	2 cut(s)	51, 54
Sau96I	GGNCC	1 cut(s)	152
ScrFI	CCNGG	1 cut(s)	315
SduI	GDGCHC	1 cut(s)	379
SetI	ASST	6 cut(s)	21, 52, 94, 161, 246, 342
SinI	GGWCC	1 cut(s)	152
Sse9I	AATT	5 cut(s)	6, 70, 164, 216, 225
SseBI	AGGCCT	1 cut(s)	100
SspMI	CTAG	2 cut(s)	47, 245
StuI	AGGCCT	1 cut(s)	100
StyD4I	CCNGG	1 cut(s)	313
StyI	CCWWGG	1 cut(s)	294
TasI	AATT	5 cut(s)	6, 70, 164, 216, 225
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TseI	GCWGC	2 cut(s)	50, 53
TspDTI	ATGAA	1 cut(s)	158
VpaK11BI	GGWCC	1 cut(s)	152
XapI	RAATTY	3 cut(s)	6, 70, 164
XspI	CTAG	2 cut(s)	47, 245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.