Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0000950

Physical Location & Seq

Genomic Coordinates Forward (+)

13165952 .. 13166704

Gene Structure 753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1165400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGAGAGCACAAACTTCGGCTAAGGCATACTATGGAGTAGCCGTACTGGTAGTATTAGGCGAAGCTGGCCGATCGACTACTCTTCCGGAATTTCTGGACGATCAATATTTTGATGAACAAAAACAAACACCACTCTCAGATGAAAACCGTAGAGATACTCGTAGAGAAGCTTTGTGGAGCCATCCCTGGATTTTAGGTGCATTCCTATCTATGTTCCTTACAACCATGTCTTGGACACGTACGTTTTGGGTTTCAGCAACTTTAGTGGGAGCTTCTTATCTAGTGTTCTTGCTTGGCTACTCCTGCTACTTCGTACGAAGTAGAATTGACGAATCTGCAGGGGAATCTCGTCTAGTAGAACAACAAAGAAAAAAGTACTGGCCACTCAAAAAAATCAAGGGGGAAAAGTCGTTTTTCATAGAAGCGATAGCTATGCGGTCAGTCTTCTTAGCATACACTATGGTGGAGGCAACAGGGAGTACGTTCTTTTTCGAACAAATGAGTTACTTGGATCACAAAGTTGGAACGGTAAAGCCACTTTATTTCAAACTAATTGGTTCCTTCTCGTGTTTCTTGGTATCGTTTCTGTGTGATGAGTTACTGGATCGGAAGCAGTACTGGCAAAATGCTACGCTGGCGAGAATTGGCTCAGGATTGGTTTGTTCCATGCTATGTTGTGTTGCTGCTTGGCAGGTTGAGAGAAAAAGGTTGAATAATTTAGTTAGCAATGACACACCTAAGGCTACTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

251

Amino Acids

28.7

Weight (kDa)

8.97

Isoelectric Point (pI)

31.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000950)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18590
malus_domestica	MD13G1165300.v1.1 MD13G1165400.v1.1
prunus_persica	Prupe.1G124400_v2.0.a1 Prupe.1G124400_v2.0.a1 Prupe.1G124400_v2.0.a1 Prupe.1G124600_v2.0.a1 Prupe.1G124900_v2.0.a1 Prupe.1G125000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0477071 RchiOBHm_Chr3g0477161 RchiOBHm_Chr4g0387871 RchiOBHm_Chr4g0405251 RchiOBHm_Chr4g0422731
rosa_laevigata	RLG00000007575 RLG00000007576 RLG00000010048 RLG00000023495
rosa_multiflora	Rmu_sc0000288.1_g000003 Rmu_sc0000311.1_g000011 Rmu_sc0000932.1_g000003 Rmu_sc0002038.1_g000019 Rmu_sc0002509.1_g000023 Rmu_sc0010329.1_g000001 Rmu_sc0012115.1_g000003
rosa_roxburghii	Rroxscaffold_5G00334470 Rroxscaffold_5G00349590 Rroxscaffold_5G00365230 Rroxscaffold_5G00365400 Rroxscaffold_6G00401580 Rroxscaffold_6G00404380 Rroxscaffold_6G00404870
rosa_rugosa	Rorug03G0182100.1 Rorug04G0185200 Rorug04G0185300 Rorug04G0185400
rosa_samantha	Rh3AG208700 Rh3AG233900 Rh3AG234000 Rh3BG241900 Rh3BG242300 Rh3BG266200 Rh3CG236300 Rh3CG236400 Rh3CG263900 Rh3DG235200 Rh3DG259300 Rh4AG019100 Rh4AG130000 Rh4AG241000 Rh4AG244600 Rh4AG245300 Rh4BG124300 Rh4BG244300 Rh4BG249800 Rh4BG250500 Rh4CG255100 Rh4DG123600 Rh4DG239700 Rh4DG244900
rosa_wichuraiana	Rw3G019030 Rw3G021020 Rw4G010520 Rw4G021070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	682
AccB7I	CCANNNNNTGG	1 cut(s)	231
AccIII	TCCGGA	1 cut(s)	85
AciI	CCGC	1 cut(s)	436
AclWI	GGATC	2 cut(s)	519, 612
AcoI	YGGCCR	2 cut(s)	67, 380
AcsI	RAATTY	1 cut(s)	89
AfaI	GTAC	6 cut(s)	45, 241, 315, 377, 481, 617
AfiI	CCNNNNNNNGG	1 cut(s)	231
AflIII	ACRYGT	1 cut(s)	236
AgsI	TTSAA	2 cut(s)	547, 712
AjnI	CCWGG	1 cut(s)	185
AleI	CACNNNNGTG	1 cut(s)	461
AluBI	AGCT	4 cut(s)	65, 170, 272, 431
AluI	AGCT	4 cut(s)	65, 170, 272, 431
Alw21I	GWGCWC	1 cut(s)	10
AlwI	GGATC	2 cut(s)	519, 612
Aor13HI	TCCGGA	1 cut(s)	85
AoxI	GGCC	2 cut(s)	67, 380
ApeKI	GCWGC	1 cut(s)	683
ApoI	RAATTY	1 cut(s)	89
AsuII	TTCGAA	1 cut(s)	492
AxyI	CCTNAGG	1 cut(s)	738
BalI	TGGCCA	1 cut(s)	382
BauI	CACGAG	1 cut(s)	565
BbsI	GAAGAC	1 cut(s)	436
Bbv12I	GWGCWC	1 cut(s)	10
BbvI	GCAGC	1 cut(s)	670
BccI	CCATC	1 cut(s)	189
BceAI	ACGGC	1 cut(s)	26
BcgI	CGANNNNNNTGC	3 cut(s)	31, 415, 449
BciT130I	CCWGG	1 cut(s)	187
BfaI	CTAG	2 cut(s)	281, 353
BfmI	CTRYAG	1 cut(s)	336
BfuAI	ACCTGC	1 cut(s)	682
BisI	GCNGC	1 cut(s)	684
BlsI	GCNGC	1 cut(s)	685
BmcAI	AGTACT	2 cut(s)	377, 617
Bme1390I	CCNGG	1 cut(s)	187
BmiI	GGNNCC	2 cut(s)	179, 559
BmrFI	CCNGG	1 cut(s)	187
BpiI	GAAGAC	1 cut(s)	436
Bpu10I	CCTNAGC	2 cut(s)	21, 649
Bpu14I	TTCGAA	1 cut(s)	492
BsaAI	YACGTR	1 cut(s)	239
BsaJI	CCNNGG	1 cut(s)	185
BsaWI	WCCGGW	1 cut(s)	85
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bsc4I	CCNNNNNNNGG	1 cut(s)	231
Bse1I	ACTGG	4 cut(s)	51, 383, 606, 623
Bse21I	CCTNAGG	1 cut(s)	738
Bse3DI	GCAATG	1 cut(s)	733
BseAI	TCCGGA	1 cut(s)	85
BseBI	CCWGG	1 cut(s)	187
BseDI	CCNNGG	1 cut(s)	185
BseGI	GGATG	1 cut(s)	181
BseLI	CCNNNNNNNGG	1 cut(s)	231
BseMI	GCAATG	1 cut(s)	733
BseMII	CTCAG	2 cut(s)	150, 663
BseNI	ACTGG	4 cut(s)	51, 383, 606, 623
BseXI	GCAGC	1 cut(s)	670
Bsh1285I	CGRYCG	1 cut(s)	74
BshFI	GGCC	2 cut(s)	69, 382
BsiEI	CGRYCG	1 cut(s)	74
BsiHKAI	GWGCWC	1 cut(s)	10
BsiSI	CCGG	1 cut(s)	86
BsiWI	CGTACG	2 cut(s)	239, 313
BslI	CCNNNNNNNGG	1 cut(s)	231
BsmI	GAATGC	1 cut(s)	200
BsnI	GGCC	2 cut(s)	69, 382
Bsp119I	TTCGAA	1 cut(s)	492
Bsp1286I	GDGCHC	1 cut(s)	10
Bsp13I	TCCGGA	1 cut(s)	85
Bsp143I	GATC	4 cut(s)	71, 100, 511, 604
BspACI	CCGC	1 cut(s)	436
BspANI	GGCC	2 cut(s)	69, 382
BspCNI	CTCAG	2 cut(s)	149, 662
BspEI	TCCGGA	1 cut(s)	85
BspLI	GGNNCC	2 cut(s)	179, 559
BspMAI	CTGCAG	1 cut(s)	340
BspMI	ACCTGC	1 cut(s)	682
BspPI	GGATC	2 cut(s)	519, 612
BspT104I	TTCGAA	1 cut(s)	492
BsrDI	GCAATG	1 cut(s)	733
BsrI	ACTGG	4 cut(s)	51, 383, 606, 623
BssECI	CCNNGG	1 cut(s)	185
BssMI	GATC	4 cut(s)	71, 100, 511, 604
BssSI	CACGAG	1 cut(s)	565
Bst2BI	CACGAG	1 cut(s)	565
Bst2UI	CCWGG	1 cut(s)	187
Bst4CI	ACNGT	2 cut(s)	149, 529
Bst6I	CTCTTC	1 cut(s)	87
BstBAI	YACGTR	1 cut(s)	239
BstBI	TTCGAA	1 cut(s)	492
BstC8I	GCNNGC	2 cut(s)	67, 636
BstDEI	CTNAG	5 cut(s)	21, 136, 448, 649, 738
BstF5I	GGATG	1 cut(s)	181
BstKTI	GATC	4 cut(s)	74, 103, 514, 607
BstMBI	GATC	4 cut(s)	71, 100, 511, 604
BstMCI	CGRYCG	1 cut(s)	74
BstMWI	GCNNNNNNNGC	4 cut(s)	66, 303, 619, 635
BstNI	CCWGG	1 cut(s)	187
BstSCI	CCNGG	1 cut(s)	185
BstSFI	CTRYAG	1 cut(s)	336
BstV1I	GCAGC	1 cut(s)	670
BstV2I	GAAGAC	1 cut(s)	436
Bsu36I	CCTNAGG	1 cut(s)	738
BsuRI	GGCC	2 cut(s)	69, 382
BtsCI	GGATG	1 cut(s)	181
BveI	ACCTGC	1 cut(s)	682
Cac8I	GCNNGC	2 cut(s)	67, 636
Csp6I	GTAC	6 cut(s)	44, 240, 314, 376, 480, 616
CspCI	CAANNNNNGTGG	2 cut(s)	246, 281
CviAII	CATG	2 cut(s)	226, 667
CviQI	GTAC	6 cut(s)	44, 240, 314, 376, 480, 616
DdeI	CTNAG	5 cut(s)	21, 136, 448, 649, 738
DpnI	GATC	4 cut(s)	73, 102, 513, 606
DpnII	GATC	4 cut(s)	71, 100, 511, 604
EaeI	YGGCCR	2 cut(s)	67, 380
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Eco81I	CCTNAGG	1 cut(s)	738
EcoRII	CCWGG	1 cut(s)	185
FaeI	CATG	2 cut(s)	229, 670
FatI	CATG	2 cut(s)	225, 666
Fnu4HI	GCNGC	1 cut(s)	684
FokI	GGATG	1 cut(s)	168
Fsp4HI	GCNGC	1 cut(s)	684
FspBI	CTAG	2 cut(s)	281, 353
GluI	GCNGC	1 cut(s)	684
HaeIII	GGCC	2 cut(s)	69, 382
HapII	CCGG	1 cut(s)	86
Hin1II	CATG	2 cut(s)	229, 670
HindIII	AAGCTT	1 cut(s)	168
HinfI	GANTC	2 cut(s)	332, 344
HpaII	CCGG	1 cut(s)	86
Hpy188I	TCNGA	2 cut(s)	139, 609
Hpy188III	TCNNGA	3 cut(s)	86, 95, 651
HpyAV	CCTTC	1 cut(s)	571
HpyCH4III	ACNGT	2 cut(s)	149, 529
HpyCH4IV	ACGT	3 cut(s)	238, 242, 482
HpyCH4V	TGCA	2 cut(s)	200, 338
HpyF10VI	GCNNNNNNNGC	4 cut(s)	66, 303, 619, 635
HpyF3I	CTNAG	5 cut(s)	21, 136, 448, 649, 738
HpySE526I	ACGT	3 cut(s)	238, 242, 482
Hsp92II	CATG	2 cut(s)	229, 670
Kpn2I	TCCGGA	1 cut(s)	85
Kzo9I	GATC	4 cut(s)	71, 100, 511, 604
LmnI	GCTCC	2 cut(s)	177, 269
Lsp1109I	GCAGC	1 cut(s)	670
MaeI	CTAG	2 cut(s)	281, 353
MaeII	ACGT	3 cut(s)	238, 242, 482
MaeIII	GTNAC	2 cut(s)	503, 597
MalI	GATC	4 cut(s)	73, 102, 513, 606
MboI	GATC	4 cut(s)	71, 100, 511, 604
MboII	GAAGA	2 cut(s)	74, 436
MhlI	GDGCHC	1 cut(s)	10
MlsI	TGGCCA	1 cut(s)	382
MluCI	AATT	5 cut(s)	89, 324, 552, 642, 715
MluNI	TGGCCA	1 cut(s)	382
MmeI	TCCRAC	1 cut(s)	502
MnlI	CCTC	1 cut(s)	460
Mox20I	TGGCCA	1 cut(s)	382
MroI	TCCGGA	1 cut(s)	85
MscI	TGGCCA	1 cut(s)	382
MslI	CAYNNNNRTG	1 cut(s)	461
Msp20I	TGGCCA	1 cut(s)	382
MspI	CCGG	1 cut(s)	86
MspR9I	CCNGG	1 cut(s)	187
Mva1269I	GAATGC	1 cut(s)	200
MvaI	CCWGG	1 cut(s)	187
MwoI	GCNNNNNNNGC	4 cut(s)	66, 303, 619, 635
NdeII	GATC	4 cut(s)	71, 100, 511, 604
NlaIII	CATG	2 cut(s)	229, 670
NlaIV	GGNNCC	2 cut(s)	179, 559
NspV	TTCGAA	1 cut(s)	492
OliI	CACNNNNGTG	1 cut(s)	461
PctI	GAATGC	1 cut(s)	200
PfeI	GAWTC	2 cut(s)	332, 344
Pfl23II	CGTACG	2 cut(s)	239, 313
PflMI	CCANNNNNTGG	1 cut(s)	231
PkrI	GCNGC	1 cut(s)	685
Ple19I	CGATCG	1 cut(s)	74
Ppu21I	YACGTR	1 cut(s)	239
Psp6I	CCWGG	1 cut(s)	185
PspGI	CCWGG	1 cut(s)	185
PspLI	CGTACG	2 cut(s)	239, 313
PspN4I	GGNNCC	2 cut(s)	179, 559
PstI	CTGCAG	1 cut(s)	340
PvuI	CGATCG	1 cut(s)	74
RsaI	GTAC	6 cut(s)	45, 241, 315, 377, 481, 617
RsaNI	GTAC	6 cut(s)	44, 240, 314, 376, 480, 616
RseI	CAYNNNNRTG	1 cut(s)	461
SatI	GCNGC	1 cut(s)	684
Sau3AI	GATC	4 cut(s)	71, 100, 511, 604
ScaI	AGTACT	2 cut(s)	377, 617
ScrFI	CCNGG	1 cut(s)	187
SduI	GDGCHC	1 cut(s)	10
SfcI	CTRYAG	1 cut(s)	336
SfuI	TTCGAA	1 cut(s)	492
SmiMI	CAYNNNNRTG	1 cut(s)	461
Sse9I	AATT	5 cut(s)	89, 324, 552, 642, 715
SsiI	CCGC	1 cut(s)	436
SspI	AATATT	1 cut(s)	107
SspMI	CTAG	2 cut(s)	281, 353
StyD4I	CCNGG	1 cut(s)	185
TaaI	ACNGT	2 cut(s)	149, 529
TaiI	ACGT	3 cut(s)	241, 245, 485
TaqI	TCGA	2 cut(s)	74, 492
TasI	AATT	5 cut(s)	89, 324, 552, 642, 715
TatI	WGTACW	2 cut(s)	375, 615
TfiI	GAWTC	2 cut(s)	332, 344
TseI	GCWGC	1 cut(s)	683
TspDTI	ATGAA	3 cut(s)	129, 156, 406
Van91I	CCANNNNNTGG	1 cut(s)	231
XapI	RAATTY	1 cut(s)	89
XspI	CTAG	2 cut(s)	281, 353
ZrmI	AGTACT	2 cut(s)	377, 617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.