Rh3AG234000

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000950
Physical Location & Seq
Reverse (-)
24110519 .. 24111145
627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG234000.1

Sequence Viewer

Length: 627 bp
ATGATCTCAGCATCTGCGATCGGGTTTTTCTCGTTCATATTCAGGCTCGGCCGTGCCTCTTACTTCATAAGCAATAAAGACCTAGCCAGAAATAAAGAAGACATAAGGATACTGCATCTTGACTCTCTTGAAAACATATCCACCCTCTGTCCAGTAGAACAATTGCAAGAACCAAGACTGGAGCTTTACACAGCCACAGAGATGATCCCGTATCGGCGAGCAGAACAGGCACAAGAAGGGGAGAATCTCACAGAACCCAAAGAGTGTCTCCGTCCGGCAGAAAGATTAAGAGCAAAAAAGTTTTGGACACTCAGTAAACTTAAGGAGGAAAAACTGTTTTTCATGAAGCTATTGCCTTGGTGCCCAGCCTTTTTGGTATACAGTGCGGTAGAGGCATCAGTCAACACGTTTTATATAGAACAAACAGATAACTGGAAAGTTCCTGCTGCCGGAATTATTCTCATCATGAATAGCAAATCGTTCTCAAATTTCATCATTCCATATCTTTTTCAGTTACTTGTTCCAAAGAAGTGCAGAGATGATACAGTGATGCAAATTGGCTGTGGGTTGACTTGTTGTGTGTTTTGTTGTATATTGCTGCTTGGCAGGTTGAGATCCACAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

208

Amino Acids

23.91

Weight (kDa)

8.55

Isoelectric Point (pI)

45.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 597
AccB1I GGYRCC 1 cut(s) 360
AccI GTMKAC 1 cut(s) 378
AciI CCGC 1 cut(s) 386
AclWI GGATC 2 cut(s) 199, 609
AcoI YGGCCR 1 cut(s) 49
AcsI RAATTY 1 cut(s) 487
AfiI CCNNNNNNNGG 1 cut(s) 449
AflII CTTAAG 1 cut(s) 320
AflIII ACRYGT 1 cut(s) 405
AgsI TTSAA 1 cut(s) 131
AluBI AGCT 2 cut(s) 184, 349
AluI AGCT 2 cut(s) 184, 349
Alw26I GTCTC 1 cut(s) 272
AlwI GGATC 2 cut(s) 199, 609
AlwNI CAGNNNCTG 1 cut(s) 14
AoxI GGCC 1 cut(s) 49
ApeKI GCWGC 2 cut(s) 446, 598
ApoI RAATTY 1 cut(s) 487
BaeGI GKGCMC 1 cut(s) 365
BanI GGYRCC 1 cut(s) 360
BbsI GAAGAC 1 cut(s) 105
BbvI GCAGC 2 cut(s) 433, 585
BceAI ACGGC 1 cut(s) 36
BciVI GTATCC 1 cut(s) 102
BcoDI GTCTC 1 cut(s) 272
BfaI CTAG 1 cut(s) 83
BfrI CTTAAG 1 cut(s) 320
BfuAI ACCTGC 1 cut(s) 597
BfuI GTATCC 1 cut(s) 102
BisI GCNGC 2 cut(s) 447, 599
BlsI GCNGC 2 cut(s) 448, 600
BmiI GGNNCC 1 cut(s) 362
BmsI GCATC 4 cut(s) 20, 124, 404, 540
BpiI GAAGAC 1 cut(s) 105
BpmI CTGGAG 1 cut(s) 200
BsaJI CCNNGG 1 cut(s) 356
Bsc4I CCNNNNNNNGG 1 cut(s) 449
Bse1I ACTGG 3 cut(s) 152, 183, 437
BseDI CCNNGG 1 cut(s) 356
BseLI CCNNNNNNNGG 1 cut(s) 449
BseMII CTCAG 2 cut(s) 21, 325
BseNI ACTGG 3 cut(s) 152, 183, 437
BseSI GKGCMC 1 cut(s) 365
BseX3I CGGCCG 1 cut(s) 49
BseXI GCAGC 2 cut(s) 433, 585
BseYI CCCAGC 1 cut(s) 364
BsgI GTGCAG 1 cut(s) 553
Bsh1285I CGRYCG 2 cut(s) 21, 52
BshFI GGCC 1 cut(s) 51
BshNI GGYRCC 1 cut(s) 360
BsiEI CGRYCG 2 cut(s) 21, 52
BsiSI CCGG 2 cut(s) 275, 450
BslI CCNNNNNNNGG 1 cut(s) 449
BsmAI GTCTC 1 cut(s) 272
BsnI GGCC 1 cut(s) 51
Bsp1286I GDGCHC 1 cut(s) 365
Bsp143I GATC 4 cut(s) 3, 18, 204, 614
BspACI CCGC 1 cut(s) 386
BspANI GGCC 1 cut(s) 51
BspCNI CTCAG 2 cut(s) 20, 324
BspHI TCATGA 2 cut(s) 342, 465
BspLI GGNNCC 1 cut(s) 362
BspMI ACCTGC 1 cut(s) 597
BspPI GGATC 2 cut(s) 199, 609
BspT107I GGYRCC 1 cut(s) 360
BspTI CTTAAG 1 cut(s) 320
BsrI ACTGG 3 cut(s) 152, 183, 437
BssECI CCNNGG 1 cut(s) 356
BssMI GATC 4 cut(s) 3, 18, 204, 614
BssNAI GTATAC 1 cut(s) 379
BssT1I CCWWGG 1 cut(s) 356
Bst1107I GTATAC 1 cut(s) 379
Bst4CI ACNGT 3 cut(s) 336, 383, 547
BstAFI CTTAAG 1 cut(s) 320
BstC8I GCNNGC 1 cut(s) 219
BstDEI CTNAG 2 cut(s) 7, 311
BstKTI GATC 4 cut(s) 6, 21, 207, 617
BstMAI GTCTC 1 cut(s) 272
BstMBI GATC 4 cut(s) 3, 18, 204, 614
BstMCI CGRYCG 2 cut(s) 21, 52
BstMWI GCNNNNNNNGC 2 cut(s) 227, 392
BstSLI GKGCMC 1 cut(s) 365
BstV1I GCAGC 2 cut(s) 433, 585
BstV2I GAAGAC 1 cut(s) 105
BstX2I RGATCY 1 cut(s) 614
BstYI RGATCY 1 cut(s) 614
BstZ17I GTATAC 1 cut(s) 379
BstZI CGGCCG 1 cut(s) 49
BsuI GTATCC 1 cut(s) 102
BsuRI GGCC 1 cut(s) 51
BtsIMutI CAGTG 2 cut(s) 388, 552
BveI ACCTGC 1 cut(s) 597
Cac8I GCNNGC 1 cut(s) 219
CaiI CAGNNNCTG 1 cut(s) 14
CciI TCATGA 2 cut(s) 342, 465
CviAII CATG 2 cut(s) 343, 466
CviJI RGCY 8 cut(s) 46, 51, 86, 184, 194, 349, 368, 561
CviKI_1 RGCY 8 cut(s) 46, 51, 86, 184, 194, 349, 368, 561
DdeI CTNAG 2 cut(s) 7, 311
DpnI GATC 4 cut(s) 5, 20, 206, 616
DpnII GATC 4 cut(s) 3, 18, 204, 614
EaeI YGGCCR 1 cut(s) 49
EagI CGGCCG 1 cut(s) 49
EclXI CGGCCG 1 cut(s) 49
Eco130I CCWWGG 1 cut(s) 356
Eco52I CGGCCG 1 cut(s) 49
EcoT14I CCWWGG 1 cut(s) 356
ErhI CCWWGG 1 cut(s) 356
FaeI CATG 2 cut(s) 346, 469
FatI CATG 2 cut(s) 342, 465
FblI GTMKAC 1 cut(s) 378
Fnu4HI GCNGC 2 cut(s) 447, 599
Fsp4HI GCNGC 2 cut(s) 447, 599
FspBI CTAG 1 cut(s) 83
GluI GCNGC 2 cut(s) 447, 599
GsaI CCCAGC 1 cut(s) 368
GsuI CTGGAG 1 cut(s) 200
HaeIII GGCC 1 cut(s) 51
HapII CCGG 2 cut(s) 275, 450
Hin1II CATG 2 cut(s) 346, 469
HincII GTYRAC 2 cut(s) 403, 570
HindII GTYRAC 2 cut(s) 403, 570
HinfI GANTC 2 cut(s) 122, 244
HpaII CCGG 2 cut(s) 275, 450
Hpy166II GTNNAC 4 cut(s) 317, 379, 403, 570
Hpy188III TCNNGA 4 cut(s) 119, 128, 343, 466
Hpy8I GTNNAC 4 cut(s) 317, 379, 403, 570
HpyAV CCTTC 1 cut(s) 230
HpyCH4III ACNGT 3 cut(s) 336, 383, 547
HpyCH4IV ACGT 1 cut(s) 407
HpyCH4V TGCA 4 cut(s) 115, 166, 534, 553
HpyF10VI GCNNNNNNNGC 2 cut(s) 227, 392
HpyF3I CTNAG 2 cut(s) 7, 311
HpySE526I ACGT 1 cut(s) 407
Hsp92II CATG 2 cut(s) 346, 469
Kzo9I GATC 4 cut(s) 3, 18, 204, 614
LmnI GCTCC 1 cut(s) 181
Lsp1109I GCAGC 2 cut(s) 433, 585
LweI GCATC 4 cut(s) 20, 124, 404, 540
MaeI CTAG 1 cut(s) 83
MaeII ACGT 1 cut(s) 407
MaeIII GTNAC 1 cut(s) 513
MalI GATC 4 cut(s) 5, 20, 206, 616
MboI GATC 4 cut(s) 3, 18, 204, 614
MboII GAAGA 1 cut(s) 110
MfeI CAATTG 1 cut(s) 161
MflI RGATCY 1 cut(s) 614
MhlI GDGCHC 1 cut(s) 365
MluCI AATT 4 cut(s) 161, 453, 487, 555
MlyI GAGTC 1 cut(s) 116
MnlI CCTC 4 cut(s) 67, 155, 319, 385
MseI TTAA 2 cut(s) 287, 321
MslI CAYNNNNRTG 1 cut(s) 200
MspCI CTTAAG 1 cut(s) 320
MspI CCGG 2 cut(s) 275, 450
MunI CAATTG 1 cut(s) 161
MwoI GCNNNNNNNGC 2 cut(s) 227, 392
NdeII GATC 4 cut(s) 3, 18, 204, 614
NlaIII CATG 2 cut(s) 346, 469
NlaIV GGNNCC 1 cut(s) 362
NmeAIII GCCGAG 1 cut(s) 27
PagI TCATGA 2 cut(s) 342, 465
PfeI GAWTC 1 cut(s) 244
PkrI GCNGC 2 cut(s) 448, 600
Ple19I CGATCG 1 cut(s) 21
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
PspFI CCCAGC 1 cut(s) 364
PspN4I GGNNCC 1 cut(s) 362
PstNI CAGNNNCTG 1 cut(s) 14
PsuI RGATCY 1 cut(s) 614
PvuI CGATCG 1 cut(s) 21
RseI CAYNNNNRTG 1 cut(s) 200
SaqAI TTAA 2 cut(s) 287, 321
SatI GCNGC 2 cut(s) 447, 599
Sau3AI GATC 4 cut(s) 3, 18, 204, 614
SchI GAGTC 1 cut(s) 116
SduI GDGCHC 1 cut(s) 365
SetI ASST 5 cut(s) 84, 186, 351, 410, 611
SfaNI GCATC 4 cut(s) 20, 124, 404, 540
SmiMI CAYNNNNRTG 1 cut(s) 200
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
Sse9I AATT 4 cut(s) 161, 453, 487, 555
SsiI CCGC 1 cut(s) 386
SspMI CTAG 1 cut(s) 83
StyI CCWWGG 1 cut(s) 356
TaaI ACNGT 3 cut(s) 336, 383, 547
TaiI ACGT 1 cut(s) 410
TasI AATT 4 cut(s) 161, 453, 487, 555
TfiI GAWTC 1 cut(s) 244
Tru1I TTAA 2 cut(s) 287, 321
Tru9I TTAA 2 cut(s) 287, 321
TscAI CASTG 2 cut(s) 388, 552
TseI GCWGC 2 cut(s) 446, 598
TspDTI ATGAA 6 cut(s) 25, 55, 331, 359, 481, 482
TspGWI ACGGA 1 cut(s) 260
TspRI CASTG 2 cut(s) 388, 552
Vha464I CTTAAG 1 cut(s) 320
XapI RAATTY 1 cut(s) 487
XmiI GTMKAC 1 cut(s) 378
XspI CTAG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.