RchiOBHm_Chr3g0477161

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000950
Physical Location & Seq
Forward (+)
22995155 .. 22996468
1314 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44249

Sequence Viewer

Length: 1314 bp
ATGTTTTTTGTGATCAGTTATATATTCTTGTTGCAGGGGCTTCTTCTGTTATGGCTTTCTGCTGAGTATATGAGCGAGGGTACTGCAACTAGGGTATTCTATGGAGCTATGGTACTAATAACATTAGGCGAAGCTGGGCGGTGGGCTGCTTTGCAAGAATTTCTGGATGAACAATATTCAAGAGAACAAAATCATGCGGAACGCACATATGATGAAAACCTGGATAAGAAAGATGCTTTGTGGATGCTTCCTTGGTTTATAGGTGCAGTGATTCCTCTTTTCCTTTTAAAAACAACTTGGCCACAAATATTCATGATATCAACAATTGCAATGGCGGTTTCTTATTTAGGGTTCTTGTTGGGCTTTCGTTATTATTTCACATACAATATGACTAATACTGAACAAGGCCAAGATGCTCGCCCAGAAGAAGTCAATCATCTAGAACAAGCACCAAGAGTCCCTGAACAAACAAGGTCAGGAAATGTATGGAGACTGATAAATATATTAAGGAAAGATGAACGTTTTCTCATAGAAGCATTAGCTATATGGTTAGCCTTCCTCCTTGCATACGGTGTTGTAAATGCAGCAGGAAGCACGTTTTTTTTTCAACAAATGGATAACTTGGATAACCCTTTCGATAACTATGATCCTGCAGTCTATTTCAATGTGTTTGCCTCATTTTCAAAGTACTTGATCTCATTTCTCTGGAACTTAATTCCAAGGAAATGGAAACCATCGCGGCTGAGGATTTGGTGCGGAATGGCTTGTATTGTGCTTTGTTGTCTTGTTGCTTCGCAAGTTGAGAGCCACAGGTTAAACACTTCTTCAAATACGAGCATATTTTGGTTGGTTCCTCAGTTCTTCTTACTGGGAGTCATGGAAGGCCTAGCCATTTATGGAATGATCGATTTTCTTGTTGATCGAGTGTCTGAAGTTGATAAAGTGATGGTCGCATATTATGGATCCCACACCACTGACTTGATCATAGGTATTGGAAAAATACTTGTTGGTCTCAGTGTTTTGGCGTTCAGAGGAAGCTGGTTTGATGACAACAACTTAGATGCCAGTCATCTTGATAAATATTACAGAGCATTAACAATCTTAACTTCTGTTGTCTTCTTCTTCCACTGTTGTATCGCCTTTTACTATTACACTAAGGAAGAATTACAAGATGAGACGCCTTCATCGGTGACAGTTGAGATGGTAAATAATCAGTCACAACCAGAGCTCAACCTACCGCGGCATAATGTTGATAATGAATTTACCAAGATGCTTGATGAGACAGTTGGAGGACCATCTGATACATATGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

437

Amino Acids

50.36

Weight (kDa)

4.89

Isoelectric Point (pI)

40.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 739, 1240
AciI CCGC 7 cut(s) 139, 197, 335, 739, 756, 1238, 1240
AclI AACGTT 1 cut(s) 520
AclWI GGATC 3 cut(s) 641, 957, 970
AcoI YGGCCR 1 cut(s) 299
AcsI RAATTY 2 cut(s) 158, 1259
AcuI CTGAAG 1 cut(s) 951
AcyI GRCGYC 1 cut(s) 1178
AfaI GTAC 3 cut(s) 82, 114, 689
AgsI TTSAA 5 cut(s) 180, 608, 664, 684, 828
AjnI CCWGG 1 cut(s) 219
AluBI AGCT 5 cut(s) 107, 134, 542, 1038, 1228
AluI AGCT 5 cut(s) 107, 134, 542, 1038, 1228
Alw21I GWGCWC 1 cut(s) 1230
Alw26I GTCTC 4 cut(s) 484, 1016, 1169, 1274
AlwI GGATC 3 cut(s) 641, 957, 970
AoxI GGCC 3 cut(s) 299, 406, 883
ApeKI GCWGC 2 cut(s) 146, 584
ApoI RAATTY 2 cut(s) 158, 1259
Asp700I GAANNNNTTC 1 cut(s) 522
AspS9I GGNCC 1 cut(s) 1292
AsuHPI GGTGA 1 cut(s) 1201
AvaII GGWCC 1 cut(s) 1292
BaeI ACNNNNGTAYC 2 cut(s) 1117, 1150
BalI TGGCCA 1 cut(s) 301
BamHI GGATCC 1 cut(s) 962
BanII GRGCYC 1 cut(s) 1230
BbsI GAAGAC 1 cut(s) 1108
Bbv12I GWGCWC 1 cut(s) 1230
BbvCI CCTCAGC 1 cut(s) 743
BbvI GCAGC 2 cut(s) 133, 596
BccI CCATC 4 cut(s) 742, 940, 1195, 1303
BcgI CGANNNNNNTGC 2 cut(s) 65, 99
BciT130I CCWGG 1 cut(s) 221
BclI TGATCA 2 cut(s) 12, 981
BcoDI GTCTC 4 cut(s) 484, 1016, 1169, 1274
BfaI CTAG 3 cut(s) 90, 440, 887
BfmI CTRYAG 1 cut(s) 651
BisI GCNGC 4 cut(s) 147, 585, 740, 1241
BlsI GCNGC 4 cut(s) 148, 586, 741, 1242
BmcAI AGTACT 1 cut(s) 689
Bme1390I CCNGG 1 cut(s) 221
Bme18I GGWCC 1 cut(s) 1292
BmgT120I GGNCC 1 cut(s) 1292
BmiI GGNNCC 2 cut(s) 852, 964
BmrFI CCNGG 1 cut(s) 221
BmrI ACTGGG 1 cut(s) 878
BmsI GCATC 5 cut(s) 223, 234, 403, 1051, 1260
BmuI ACTGGG 1 cut(s) 878
BpiI GAAGAC 1 cut(s) 1108
Bpu10I CCTNAGC 1 cut(s) 743
Bsa29I ATCGAT 1 cut(s) 906
BsaHI GRCGYC 1 cut(s) 1178
BsaI GGTCTC 1 cut(s) 1016
BsaJI CCNNGG 3 cut(s) 251, 719, 1238
BsaXI ACNNNNNCTCC 2 cut(s) 96, 126
Bse1I ACTGG 2 cut(s) 873, 1065
Bse3DI GCAATG 1 cut(s) 336
BseBI CCWGG 1 cut(s) 221
BseCI ATCGAT 1 cut(s) 906
BseDI CCNNGG 3 cut(s) 251, 719, 1238
BseGI GGATG 2 cut(s) 172, 249
BseMI GCAATG 1 cut(s) 336
BseMII CTCAG 4 cut(s) 54, 734, 869, 1027
BseNI ACTGG 2 cut(s) 873, 1065
BseXI GCAGC 2 cut(s) 133, 596
BseYI CCCAGC 1 cut(s) 134
BsgI GTGCAG 1 cut(s) 285
Bsh1236I CGCG 2 cut(s) 739, 1240
BshFI GGCC 3 cut(s) 301, 408, 885
BshVI ATCGAT 1 cut(s) 906
BsiHKAI GWGCWC 1 cut(s) 1230
BslFI GGGAC 1 cut(s) 443
BsmAI GTCTC 4 cut(s) 484, 1016, 1169, 1274
BsmBI CGTCTC 1 cut(s) 1169
BsmFI GGGAC 1 cut(s) 443
BsnI GGCC 3 cut(s) 301, 408, 885
Bso31I GGTCTC 1 cut(s) 1016
Bsp1286I GDGCHC 1 cut(s) 1230
Bsp143I GATC 7 cut(s) 12, 646, 693, 903, 919, 962, 981
BspACI CCGC 7 cut(s) 139, 197, 335, 739, 756, 1238, 1240
BspANI GGCC 3 cut(s) 301, 408, 885
BspCNI CTCAG 4 cut(s) 55, 735, 868, 1026
BspDI ATCGAT 1 cut(s) 906
BspFNI CGCG 2 cut(s) 739, 1240
BspHI TCATGA 1 cut(s) 312
BspLI GGNNCC 2 cut(s) 852, 964
BspMAI CTGCAG 1 cut(s) 655
BspPI GGATC 3 cut(s) 641, 957, 970
BspTNI GGTCTC 1 cut(s) 1016
BsrDI GCAATG 1 cut(s) 336
BsrI ACTGG 2 cut(s) 873, 1065
BssECI CCNNGG 3 cut(s) 251, 719, 1238
BssMI GATC 7 cut(s) 12, 646, 693, 903, 919, 962, 981
BssNI GRCGYC 1 cut(s) 1178
BssT1I CCWWGG 2 cut(s) 251, 719
Bst2UI CCWGG 1 cut(s) 221
Bst4CI ACNGT 4 cut(s) 572, 1130, 1195, 1285
BstACI GRCGYC 1 cut(s) 1178
BstC8I GCNNGC 1 cut(s) 418
BstDEI CTNAG 6 cut(s) 63, 743, 855, 1013, 1057, 1155
BstDSI CCRYGG 1 cut(s) 1238
BstF5I GGATG 2 cut(s) 172, 249
BstFNI CGCG 2 cut(s) 739, 1240
BstKTI GATC 7 cut(s) 15, 649, 696, 906, 922, 965, 984
BstMAI GTCTC 4 cut(s) 484, 1016, 1169, 1274
BstMBI GATC 7 cut(s) 12, 646, 693, 903, 919, 962, 981
BstNI CCWGG 1 cut(s) 221
BstSCI CCNGG 1 cut(s) 219
BstSFI CTRYAG 1 cut(s) 651
BstUI CGCG 2 cut(s) 739, 1240
BstV1I GCAGC 2 cut(s) 133, 596
BstV2I GAAGAC 1 cut(s) 1108
BstX2I RGATCY 1 cut(s) 962
BstXI CCANNNNNNTGG 1 cut(s) 726
BstYI RGATCY 1 cut(s) 962
Bsu15I ATCGAT 1 cut(s) 906
BsuRI GGCC 3 cut(s) 301, 408, 885
BsuTUI ATCGAT 1 cut(s) 906
BtgI CCRYGG 1 cut(s) 1238
BtgZI GCGATG 1 cut(s) 720
BtsCI GGATG 2 cut(s) 172, 249
BtsI GCAGTG 1 cut(s) 273
BtsIMutI CAGTG 4 cut(s) 273, 972, 1021, 1126
Cac8I GCNNGC 1 cut(s) 418
CciI TCATGA 1 cut(s) 312
Cfr13I GGNCC 1 cut(s) 1292
Cfr42I CCGCGG 1 cut(s) 1241
ClaI ATCGAT 1 cut(s) 906
CseI GACGC 1 cut(s) 1186
Csp6I GTAC 3 cut(s) 81, 113, 688
CviAII CATG 3 cut(s) 194, 313, 877
CviQI GTAC 3 cut(s) 81, 113, 688
DdeI CTNAG 6 cut(s) 63, 743, 855, 1013, 1057, 1155
DpnI GATC 7 cut(s) 14, 648, 695, 905, 921, 964, 983
DpnII GATC 7 cut(s) 12, 646, 693, 903, 919, 962, 981
DraI TTTAAA 1 cut(s) 288
EaeI YGGCCR 1 cut(s) 299
Ecl136II GAGCTC 1 cut(s) 1228
Eco130I CCWWGG 2 cut(s) 251, 719
Eco147I AGGCCT 1 cut(s) 885
Eco24I GRGCYC 1 cut(s) 1230
Eco31I GGTCTC 1 cut(s) 1016
Eco32I GATATC 1 cut(s) 318
Eco47I GGWCC 1 cut(s) 1292
Eco53kI GAGCTC 1 cut(s) 1228
Eco57I CTGAAG 1 cut(s) 951
EcoICRI GAGCTC 1 cut(s) 1228
EcoRII CCWGG 1 cut(s) 219
EcoRV GATATC 1 cut(s) 318
EcoT14I CCWWGG 2 cut(s) 251, 719
EcoT38I GRGCYC 1 cut(s) 1230
ErhI CCWWGG 2 cut(s) 251, 719
Esp3I CGTCTC 1 cut(s) 1169
FaeI CATG 3 cut(s) 197, 316, 880
FaqI GGGAC 1 cut(s) 443
FatI CATG 3 cut(s) 193, 312, 876
FauNDI CATATG 2 cut(s) 208, 1306
FbaI TGATCA 2 cut(s) 12, 981
Fnu4HI GCNGC 4 cut(s) 147, 585, 740, 1241
FokI GGATG 2 cut(s) 179, 256
FriOI GRGCYC 1 cut(s) 1230
Fsp4HI GCNGC 4 cut(s) 147, 585, 740, 1241
FspBI CTAG 3 cut(s) 90, 440, 887
GluI GCNGC 4 cut(s) 147, 585, 740, 1241
GsaI CCCAGC 1 cut(s) 138
HaeIII GGCC 3 cut(s) 301, 408, 885
HgaI GACGC 1 cut(s) 1186
Hin1I GRCGYC 1 cut(s) 1178
Hin1II CATG 3 cut(s) 197, 316, 880
HinfI GANTC 3 cut(s) 271, 456, 873
HphI GGTGA 1 cut(s) 1201
Hpy188I TCNGA 3 cut(s) 931, 1031, 1300
Hpy188III TCNNGA 7 cut(s) 164, 180, 313, 440, 477, 706, 1073
HpyAV CCTTC 3 cut(s) 565, 875, 1191
HpyCH4III ACNGT 4 cut(s) 572, 1130, 1195, 1285
HpyCH4IV ACGT 2 cut(s) 520, 596
HpyCH4V TGCA 8 cut(s) 34, 86, 154, 266, 329, 566, 584, 653
HpyF3I CTNAG 6 cut(s) 63, 743, 855, 1013, 1057, 1155
HpySE526I ACGT 2 cut(s) 520, 596
Hsp92I GRCGYC 1 cut(s) 1178
Hsp92II CATG 3 cut(s) 197, 316, 880
Ksp22I TGATCA 2 cut(s) 12, 981
KspI CCGCGG 1 cut(s) 1241
Kzo9I GATC 7 cut(s) 12, 646, 693, 903, 919, 962, 981
LmnI GCTCC 1 cut(s) 104
Lsp1109I GCAGC 2 cut(s) 133, 596
LweI GCATC 5 cut(s) 223, 234, 403, 1051, 1260
MaeI CTAG 3 cut(s) 90, 440, 887
MaeII ACGT 2 cut(s) 520, 596
MaeIII GTNAC 2 cut(s) 1189, 1215
MalI GATC 7 cut(s) 14, 648, 695, 905, 921, 964, 983
MboI GATC 7 cut(s) 12, 646, 693, 903, 919, 962, 981
MboII GAAGA 8 cut(s) 35, 437, 816, 853, 1108, 1111, 1114, 1172
MfeI CAATTG 1 cut(s) 324
MflI RGATCY 1 cut(s) 962
MhlI GDGCHC 1 cut(s) 1230
MlsI TGGCCA 1 cut(s) 301
MluCI AATT 5 cut(s) 158, 324, 714, 1163, 1259
MluNI TGGCCA 1 cut(s) 301
MlyI GAGTC 2 cut(s) 465, 882
MmeI TCCRAC 1 cut(s) 1267
MnlI CCTC 8 cut(s) 70, 285, 569, 685, 738, 864, 1025, 1283
Mox20I TGGCCA 1 cut(s) 301
MroXI GAANNNNTTC 1 cut(s) 522
MscI TGGCCA 1 cut(s) 301
MseI TTAA 6 cut(s) 287, 506, 713, 815, 1094, 1103
Msp20I TGGCCA 1 cut(s) 301
MspA1I CMGCKG 1 cut(s) 1240
MspR9I CCNGG 1 cut(s) 221
MunI CAATTG 1 cut(s) 324
MvaI CCWGG 1 cut(s) 221
MvnI CGCG 2 cut(s) 739, 1240
NdeI CATATG 2 cut(s) 208, 1306
NdeII GATC 7 cut(s) 12, 646, 693, 903, 919, 962, 981
NlaIII CATG 3 cut(s) 197, 316, 880
NlaIV GGNNCC 2 cut(s) 852, 964
NmuCI GTSAC 2 cut(s) 1189, 1215
PagI TCATGA 1 cut(s) 312
PceI AGGCCT 1 cut(s) 885
PdmI GAANNNNTTC 1 cut(s) 522
PfeI GAWTC 1 cut(s) 271
PkrI GCNGC 4 cut(s) 148, 586, 741, 1242
PleI GAGTC 2 cut(s) 464, 881
PpsI GAGTC 2 cut(s) 464, 881
Psp124BI GAGCTC 1 cut(s) 1230
Psp1406I AACGTT 1 cut(s) 520
Psp6I CCWGG 1 cut(s) 219
PspFI CCCAGC 1 cut(s) 134
PspGI CCWGG 1 cut(s) 219
PspN4I GGNNCC 2 cut(s) 852, 964
PspPI GGNCC 1 cut(s) 1292
PstI CTGCAG 1 cut(s) 655
PsuI RGATCY 1 cut(s) 962
RsaI GTAC 3 cut(s) 82, 114, 689
RsaNI GTAC 3 cut(s) 81, 113, 688
SacI GAGCTC 1 cut(s) 1230
SacII CCGCGG 1 cut(s) 1241
SaqAI TTAA 6 cut(s) 287, 506, 713, 815, 1094, 1103
SatI GCNGC 4 cut(s) 147, 585, 740, 1241
Sau3AI GATC 7 cut(s) 12, 646, 693, 903, 919, 962, 981
Sau96I GGNCC 1 cut(s) 1292
ScaI AGTACT 1 cut(s) 689
SchI GAGTC 2 cut(s) 465, 882
ScrFI CCNGG 1 cut(s) 221
SduI GDGCHC 1 cut(s) 1230
SfaNI GCATC 5 cut(s) 223, 234, 403, 1051, 1260
SfcI CTRYAG 1 cut(s) 651
Sfr303I CCGCGG 1 cut(s) 1241
SgrBI CCGCGG 1 cut(s) 1241
SinI GGWCC 1 cut(s) 1292
Sse9I AATT 5 cut(s) 158, 324, 714, 1163, 1259
SseBI AGGCCT 1 cut(s) 885
SsiI CCGC 7 cut(s) 139, 197, 335, 739, 756, 1238, 1240
SspI AATATT 3 cut(s) 176, 309, 1082
SspMI CTAG 3 cut(s) 90, 440, 887
SstI GAGCTC 1 cut(s) 1230
StuI AGGCCT 1 cut(s) 885
StyD4I CCNGG 1 cut(s) 219
StyI CCWWGG 2 cut(s) 251, 719
TaaI ACNGT 4 cut(s) 572, 1130, 1195, 1285
TaiI ACGT 2 cut(s) 523, 599
TaqI TCGA 3 cut(s) 636, 906, 922
TasI AATT 5 cut(s) 158, 324, 714, 1163, 1259
TatI WGTACW 1 cut(s) 687
TauI GCSGC 2 cut(s) 742, 1243
TfiI GAWTC 1 cut(s) 271
Tru1I TTAA 6 cut(s) 287, 506, 713, 815, 1094, 1103
Tru9I TTAA 6 cut(s) 287, 506, 713, 815, 1094, 1103
TscAI CASTG 4 cut(s) 273, 979, 1021, 1133
TseFI GTSAC 2 cut(s) 1189, 1215
TseI GCWGC 2 cut(s) 146, 584
Tsp45I GTSAC 2 cut(s) 1189, 1215
TspDTI ATGAA 6 cut(s) 183, 228, 301, 531, 1173, 1272
TspRI CASTG 4 cut(s) 273, 979, 1021, 1133
VpaK11BI GGWCC 1 cut(s) 1292
XapI RAATTY 2 cut(s) 158, 1259
XbaI TCTAGA 1 cut(s) 439
XmnI GAANNNNTTC 1 cut(s) 522
XspI CTAG 3 cut(s) 90, 440, 887
ZrmI AGTACT 1 cut(s) 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.