Rh4AG019100

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000950
Physical Location & Seq
Forward (+)
3633672 .. 3640350
6679 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG019100.1

Sequence Viewer

Length: 1566 bp
ATGTGGAAGTCAGTAGCAAATTGGTTCGCAAGCTACCTCTACTTTTCCAAGGCTACTTTATGCATCCGGGGTTTGGTCTTCAGCCATAGCTTCGTAAACCATTTGGTAGTATCTGCCTTGATGGCGTACGTGCAGGATAGTATAAAGAAGGATTCATTTGCTGCTGTAGCTACAAATATTATAAATGGGGTATCATCCATCATGGTTTGTTTCCTTGCTTGTATCTCAAACGCGGTCGGTCCTTTTAAGGTGATTGCCATTACAAATGCTGCCTATTTGCTTGGACTAATTATATTCTGGGTGTTCGACGAACCCATACTAGAATGTGGAGCTGCGTTACTTGTAGCATTAGGCGAGGCTGGACGGCCAGCTTCTTTGGGTAGATTTCTTGAGTATCAATATTCACGTGAAACTGACGACTTCAAATCACCCGAAAAACAAAACAATCCTGAAGCCGAGAAAGATCATACTTTGACCAGAAAAGAAGAAGATGATCCTTTTCGAAAAGAAGAAAAAGAAGATGATAAGCGAAAATGTGCTTTGTGGAACCATCCCTGGTTTTTAGGTGCAGCTGTAACTCTTGGCTTTATAAAGAGATCTGATGGAACTCAATTACTGCTTTCGACCATCGCCATGGGAGTTGGTTACTCACTGTTCTGGTATGGCGTCTTCTCATATTCCAGAAATAGTCCAGCTGCAGAAGCAACACATAGAGATCAGGGCCTTTTCCAAGCCATCAAAACACTCTCTCCACCAAAAAAAGGAGGGTGGAGATTGGGTTTCAGCCAAAGATCCGAATCTAGAAAACATTATTACAAAGAAATGTTAGTTATGTGCTTAGCTTTCATCGCATACGGTCTGGTCGAGGCAACGGGGAGCACCTTCTTTTTCACCCAAATTACACTAGTACTGGATAACGGGGAAATCCCAGCTGTCACTTATTTCGTTATCCTCCAATCCTTGTCAAGCTCGATAATCTCATTTTTCTGGAGTTTACTAGCTCCAAATCGGTCAAAACGTGCTACATTGTTCAGGATCGGCTGCGGATTGGTTTGTTCTGTGCTATGTATGGTTGTTGCTTGGCGAGTTGCGATTCATATGAGTAAACCTGGAAATATTTACTTGAGCCTTGTTTGGTTCATTCCACAATTCTGCCTGTTAGGGTGCATGAGAGGGCTTGCCATAGATGGATTGATCGTGTTTTTTGCGGATCGAGTTGATGGCAATGATAAAAGACAGGCTAGGTATTATGGAACATACGCCAGTGAATTAGTCCTTGGTAGTGGAACACTACTGATTGCCGCGAGTATTTTCGGGTTTAGAGGAATCTTGGATAAAGTTGATCAGTACTACAAGTACTACAGGGCGCTAGCATTCATAGGTGGTGCTAACCTTTGCTATTACTTTTGTGTGGCCTTTTACTTTTATACCAAGGAGGATAACGTACAAAGCTATACATCGAACGAGGACAAGTATCAACAAAATGTGTCCTCAGCTGGCGCGGGTTCTGAGGAGAACATGGAAGCCGTGAAATTGAGCTGTGAATGTTGTAATAATTGTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

521

Amino Acids

58.36

Weight (kDa)

8.19

Isoelectric Point (pI)

38.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 182, 590
AccII CGCG 3 cut(s) 233, 1304, 1502
AciI CCGC 5 cut(s) 233, 1044, 1208, 1302, 1502
AclWI GGATC 4 cut(s) 488, 786, 1043, 1218
AcoI YGGCCR 1 cut(s) 365
AcuI CTGAAG 2 cut(s) 64, 471
AcvI CACGTG 1 cut(s) 407
AcyI GRCGYC 1 cut(s) 666
AfaI GTAC 5 cut(s) 128, 909, 1349, 1358, 1446
AfiI CCNNNNNNNGG 2 cut(s) 73, 761
AgsI TTSAA 1 cut(s) 424
AhlI ACTAGT 1 cut(s) 904
AjnI CCWGG 2 cut(s) 554, 1108
AjuI GAANNNNNNNTTGG 2 cut(s) 1260, 1292
Alw21I GWGCWC 1 cut(s) 881
AlwI GGATC 4 cut(s) 488, 786, 1043, 1218
AoxI GGCC 3 cut(s) 365, 721, 1413
ApeKI GCWGC 6 cut(s) 161, 269, 332, 569, 695, 1041
AspLEI GCGC 2 cut(s) 1369, 1502
AspS9I GGNCC 2 cut(s) 239, 721
AsuC2I CCSGG 1 cut(s) 68
AsuHPI GGTGA 3 cut(s) 262, 420, 883
AsuII TTCGAA 1 cut(s) 502
AsuNHI GCTAGC 1 cut(s) 1369
AvaII GGWCC 1 cut(s) 239
BarI GAAGNNNNNNTAC 2 cut(s) 653, 685
BbrPI CACGTG 1 cut(s) 407
BbsI GAAGAC 2 cut(s) 70, 661
Bbv12I GWGCWC 1 cut(s) 881
BbvCI CCTCAGC 1 cut(s) 1492
BbvI GCAGC 6 cut(s) 148, 256, 319, 581, 682, 1028
BccI CCATC 8 cut(s) 115, 206, 558, 596, 635, 743, 1181, 1214
BceAI ACGGC 2 cut(s) 380, 1511
BciT130I CCWGG 2 cut(s) 556, 1110
BclI TGATCA 1 cut(s) 1342
BcnI CCSGG 1 cut(s) 68
BcuI ACTAGT 1 cut(s) 904
BfaI CTAG 6 cut(s) 320, 801, 905, 998, 1242, 1370
BfmI CTRYAG 3 cut(s) 165, 696, 1360
BfoI RGCGCY 1 cut(s) 1370
BglI GCCNNNNNGGC 1 cut(s) 122
BglII AGATCT 1 cut(s) 596
BisI GCNGC 7 cut(s) 162, 270, 333, 570, 696, 1042, 1302
BlpI GCTNAGC 1 cut(s) 838
BlsI GCNGC 7 cut(s) 163, 271, 334, 571, 697, 1043, 1303
BmcAI AGTACT 3 cut(s) 909, 1349, 1358
Bme1390I CCNGG 3 cut(s) 68, 556, 1110
Bme18I GGWCC 1 cut(s) 239
BmgT120I GGNCC 2 cut(s) 239, 721
BmiI GGNNCC 1 cut(s) 548
BmrFI CCNGG 3 cut(s) 68, 556, 1110
BmsI GCATC 1 cut(s) 72
BmtI GCTAGC 1 cut(s) 1373
BpiI GAAGAC 2 cut(s) 70, 661
BpmI CTGGAG 1 cut(s) 1009
Bpu10I CCTNAGC 1 cut(s) 1492
Bpu1102I GCTNAGC 1 cut(s) 838
Bpu14I TTCGAA 1 cut(s) 502
BpuEI CTTGAG 2 cut(s) 410, 1144
BpuMI CCSGG 1 cut(s) 68
BsaAI YACGTR 2 cut(s) 130, 407
BsaBI GATNNNNATC 1 cut(s) 796
BsaHI GRCGYC 1 cut(s) 666
BsaJI CCNNGG 6 cut(s) 48, 67, 554, 633, 1276, 1431
BsaXI ACNNNNNCTCC 4 cut(s) 733, 763, 763, 793
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 761
Bse1I ACTGG 2 cut(s) 915, 1263
Bse3DI GCAATG 1 cut(s) 1231
Bse8I GATNNNNATC 1 cut(s) 796
BseBI CCWGG 2 cut(s) 556, 1110
BseDI CCNNGG 6 cut(s) 48, 67, 554, 633, 1276, 1431
BseGI GGATG 3 cut(s) 63, 194, 550
BseJI GATNNNNATC 1 cut(s) 796
BseLI CCNNNNNNNGG 2 cut(s) 73, 761
BseMI GCAATG 1 cut(s) 1231
BseMII CTCAG 2 cut(s) 1500, 1506
BseNI ACTGG 2 cut(s) 915, 1263
BseRI GAGGAG 1 cut(s) 1526
BseXI GCAGC 6 cut(s) 148, 256, 319, 581, 682, 1028
BseYI CCCAGC 1 cut(s) 928
BsgI GTGCAG 2 cut(s) 152, 588
Bsh1236I CGCG 3 cut(s) 233, 1304, 1502
Bsh1285I CGRYCG 1 cut(s) 237
BshFI GGCC 3 cut(s) 367, 723, 1415
BsiEI CGRYCG 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 881
BsiSI CCGG 1 cut(s) 67
BsiWI CGTACG 1 cut(s) 126
BslI CCNNNNNNNGG 2 cut(s) 73, 761
BsmI GAATGC 1 cut(s) 1373
BsnI GGCC 3 cut(s) 367, 723, 1415
Bsp119I TTCGAA 1 cut(s) 502
Bsp1286I GDGCHC 1 cut(s) 881
Bsp143I GATC 9 cut(s) 463, 493, 596, 715, 791, 1035, 1194, 1210, 1342
Bsp1720I GCTNAGC 1 cut(s) 838
Bsp19I CCATGG 1 cut(s) 633
BspACI CCGC 5 cut(s) 233, 1044, 1208, 1302, 1502
BspANI GGCC 3 cut(s) 367, 723, 1415
BspCNI CTCAG 2 cut(s) 1501, 1505
BspFNI CGCG 3 cut(s) 233, 1304, 1502
BspLI GGNNCC 1 cut(s) 548
BspMAI CTGCAG 1 cut(s) 700
BspOI GCTAGC 1 cut(s) 1373
BspPI GGATC 4 cut(s) 488, 786, 1043, 1218
BspT104I TTCGAA 1 cut(s) 502
BsrDI GCAATG 1 cut(s) 1231
BsrI ACTGG 2 cut(s) 915, 1263
BssECI CCNNGG 6 cut(s) 48, 67, 554, 633, 1276, 1431
BssMI GATC 9 cut(s) 463, 493, 596, 715, 791, 1035, 1194, 1210, 1342
BssNI GRCGYC 1 cut(s) 666
BssT1I CCWWGG 4 cut(s) 48, 633, 1276, 1431
Bst2UI CCWGG 2 cut(s) 556, 1110
Bst4CI ACNGT 2 cut(s) 654, 857
BstACI GRCGYC 1 cut(s) 666
BstBAI YACGTR 2 cut(s) 130, 407
BstBI TTCGAA 1 cut(s) 502
BstC8I GCNNGC 5 cut(s) 31, 369, 1179, 1371, 1498
BstDEI CTNAG 3 cut(s) 838, 1492, 1509
BstDSI CCRYGG 1 cut(s) 633
BstF5I GGATG 3 cut(s) 63, 194, 550
BstFNI CGCG 3 cut(s) 233, 1304, 1502
BstH2I RGCGCY 1 cut(s) 1370
BstHHI GCGC 2 cut(s) 1369, 1502
BstKTI GATC 9 cut(s) 466, 496, 599, 718, 794, 1038, 1197, 1213, 1345
BstMBI GATC 9 cut(s) 463, 493, 596, 715, 791, 1035, 1194, 1210, 1342
BstMCI CGRYCG 1 cut(s) 237
BstMWI GCNNNNNNNGC 4 cut(s) 122, 167, 701, 848
BstNI CCWGG 2 cut(s) 556, 1110
BstSCI CCNGG 3 cut(s) 66, 554, 1108
BstSFI CTRYAG 3 cut(s) 165, 696, 1360
BstUI CGCG 3 cut(s) 233, 1304, 1502
BstV1I GCAGC 6 cut(s) 148, 256, 319, 581, 682, 1028
BstV2I GAAGAC 2 cut(s) 70, 661
BstX2I RGATCY 2 cut(s) 596, 791
BstXI CCANNNNNNTGG 1 cut(s) 634
BstYI RGATCY 2 cut(s) 596, 791
BsuRI GGCC 3 cut(s) 367, 723, 1415
BtgI CCRYGG 1 cut(s) 633
BtgZI GCGATG 2 cut(s) 613, 832
BtsCI GGATG 3 cut(s) 63, 194, 550
BtsIMutI CAGTG 2 cut(s) 650, 1270
Cac8I GCNNGC 5 cut(s) 31, 369, 1179, 1371, 1498
CfoI GCGC 2 cut(s) 1369, 1502
Cfr13I GGNCC 2 cut(s) 239, 721
CseI GACGC 1 cut(s) 655
Csp6I GTAC 5 cut(s) 127, 908, 1348, 1357, 1445
CviAII CATG 4 cut(s) 202, 634, 1168, 1519
CviQI GTAC 5 cut(s) 127, 908, 1348, 1357, 1445
DdeI CTNAG 3 cut(s) 838, 1492, 1509
DpnI GATC 9 cut(s) 465, 495, 598, 717, 793, 1037, 1196, 1212, 1344
DpnII GATC 9 cut(s) 463, 493, 596, 715, 791, 1035, 1194, 1210, 1342
EaeI YGGCCR 1 cut(s) 365
Eco130I CCWWGG 4 cut(s) 48, 633, 1276, 1431
Eco47I GGWCC 1 cut(s) 239
Eco57I CTGAAG 2 cut(s) 64, 471
Eco72I CACGTG 1 cut(s) 407
EcoO109I RGGNCCY 1 cut(s) 721
EcoRII CCWGG 2 cut(s) 554, 1108
EcoT14I CCWWGG 4 cut(s) 48, 633, 1276, 1431
EcoT22I ATGCAT 1 cut(s) 65
ErhI CCWWGG 4 cut(s) 48, 633, 1276, 1431
FaeI CATG 4 cut(s) 205, 637, 1171, 1522
FatI CATG 4 cut(s) 201, 633, 1167, 1518
FauI CCCGC 1 cut(s) 1495
FauNDI CATATG 1 cut(s) 1098
FbaI TGATCA 1 cut(s) 1342
Fnu4HI GCNGC 7 cut(s) 162, 270, 333, 570, 696, 1042, 1302
FokI GGATG 3 cut(s) 50, 181, 537
Fsp4HI GCNGC 7 cut(s) 162, 270, 333, 570, 696, 1042, 1302
FspBI CTAG 6 cut(s) 320, 801, 905, 998, 1242, 1370
GlaI GCGC 2 cut(s) 1368, 1501
GluI GCNGC 7 cut(s) 162, 270, 333, 570, 696, 1042, 1302
GsaI CCCAGC 1 cut(s) 932
GsuI CTGGAG 1 cut(s) 1009
HaeII RGCGCY 1 cut(s) 1370
HaeIII GGCC 3 cut(s) 367, 723, 1415
HapII CCGG 1 cut(s) 67
HgaI GACGC 1 cut(s) 655
HhaI GCGC 2 cut(s) 1369, 1502
Hin1I GRCGYC 1 cut(s) 666
Hin1II CATG 4 cut(s) 205, 637, 1171, 1522
Hin6I GCGC 2 cut(s) 1367, 1500
HinP1I GCGC 2 cut(s) 1367, 1500
HinfI GANTC 4 cut(s) 152, 797, 1093, 1326
HpaII CCGG 1 cut(s) 67
HphI GGTGA 3 cut(s) 262, 420, 883
Hpy166II GTNNAC 3 cut(s) 97, 995, 1106
Hpy188I TCNGA 3 cut(s) 601, 796, 1510
Hpy188III TCNNGA 6 cut(s) 389, 449, 681, 801, 988, 1033
Hpy8I GTNNAC 3 cut(s) 97, 995, 1106
Hpy99I CGWCG 1 cut(s) 311
HpyAV CCTTC 2 cut(s) 142, 892
HpyCH4III ACNGT 2 cut(s) 654, 857
HpyCH4IV ACGT 4 cut(s) 129, 406, 1018, 1443
HpyCH4V TGCA 5 cut(s) 63, 133, 569, 698, 1167
HpyF10VI GCNNNNNNNGC 4 cut(s) 122, 167, 701, 848
HpyF3I CTNAG 3 cut(s) 838, 1492, 1509
HpySE526I ACGT 4 cut(s) 129, 406, 1018, 1443
Hsp92I GRCGYC 1 cut(s) 666
Hsp92II CATG 4 cut(s) 205, 637, 1171, 1522
HspAI GCGC 2 cut(s) 1367, 1500
Ksp22I TGATCA 1 cut(s) 1342
Kzo9I GATC 9 cut(s) 463, 493, 596, 715, 791, 1035, 1194, 1210, 1342
LmnI GCTCC 3 cut(s) 329, 876, 1006
Lsp1109I GCAGC 6 cut(s) 148, 256, 319, 581, 682, 1028
LweI GCATC 1 cut(s) 72
MaeI CTAG 6 cut(s) 320, 801, 905, 998, 1242, 1370
MaeII ACGT 4 cut(s) 129, 406, 1018, 1443
MaeIII GTNAC 4 cut(s) 336, 574, 644, 934
MalI GATC 9 cut(s) 465, 495, 598, 717, 793, 1037, 1196, 1212, 1344
MboI GATC 9 cut(s) 463, 493, 596, 715, 791, 1035, 1194, 1210, 1342
MboII GAAGA 6 cut(s) 70, 497, 500, 521, 530, 661
MflI RGATCY 2 cut(s) 596, 791
MhlI GDGCHC 1 cut(s) 881
MluCI AATT 8 cut(s) 19, 288, 611, 897, 1148, 1268, 1532, 1555
Mph1103I ATGCAT 1 cut(s) 65
MseI TTAA 1 cut(s) 246
MslI CAYNNNNRTG 1 cut(s) 632
MspA1I CMGCKG 4 cut(s) 572, 695, 932, 1496
MspI CCGG 1 cut(s) 67
MspR9I CCNGG 3 cut(s) 68, 556, 1110
Mva1269I GAATGC 1 cut(s) 1373
MvaI CCWGG 2 cut(s) 556, 1110
MvnI CGCG 3 cut(s) 233, 1304, 1502
MwoI GCNNNNNNNGC 4 cut(s) 122, 167, 701, 848
NciI CCSGG 1 cut(s) 68
NcoI CCATGG 1 cut(s) 633
NdeI CATATG 1 cut(s) 1098
NdeII GATC 9 cut(s) 463, 493, 596, 715, 791, 1035, 1194, 1210, 1342
NheI GCTAGC 1 cut(s) 1369
NlaIII CATG 4 cut(s) 205, 637, 1171, 1522
NlaIV GGNNCC 1 cut(s) 548
NmeAIII GCCGAG 1 cut(s) 481
NmuCI GTSAC 1 cut(s) 934
NsiI ATGCAT 1 cut(s) 65
NspV TTCGAA 1 cut(s) 502
PcsI WCGNNNNNNNCGW 2 cut(s) 861, 1015
PctI GAATGC 1 cut(s) 1373
PfeI GAWTC 4 cut(s) 152, 797, 1093, 1326
Pfl23II CGTACG 1 cut(s) 126
PkrI GCNGC 7 cut(s) 163, 271, 334, 571, 697, 1043, 1303
PmaCI CACGTG 1 cut(s) 407
PmlI CACGTG 1 cut(s) 407
Ppu21I YACGTR 2 cut(s) 130, 407
PsiI TTATAA 2 cut(s) 182, 590
Psp6I CCWGG 2 cut(s) 554, 1108
PspCI CACGTG 1 cut(s) 407
PspFI CCCAGC 1 cut(s) 928
PspGI CCWGG 2 cut(s) 554, 1108
PspLI CGTACG 1 cut(s) 126
PspN4I GGNNCC 1 cut(s) 548
PspPI GGNCC 2 cut(s) 239, 721
PstI CTGCAG 1 cut(s) 700
PsuI RGATCY 2 cut(s) 596, 791
PvuII CAGCTG 4 cut(s) 572, 695, 932, 1496
RsaI GTAC 5 cut(s) 128, 909, 1349, 1358, 1446
RsaNI GTAC 5 cut(s) 127, 908, 1348, 1357, 1445
RseI CAYNNNNRTG 1 cut(s) 632
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 7 cut(s) 162, 270, 333, 570, 696, 1042, 1302
Sau3AI GATC 9 cut(s) 463, 493, 596, 715, 791, 1035, 1194, 1210, 1342
Sau96I GGNCC 2 cut(s) 239, 721
ScaI AGTACT 3 cut(s) 909, 1349, 1358
ScrFI CCNGG 3 cut(s) 68, 556, 1110
SduI GDGCHC 1 cut(s) 881
SfaNI GCATC 1 cut(s) 72
SfcI CTRYAG 3 cut(s) 165, 696, 1360
SfuI TTCGAA 1 cut(s) 502
SinI GGWCC 1 cut(s) 239
SmiMI CAYNNNNRTG 1 cut(s) 632
SmlI CTYRAG 2 cut(s) 389, 1123
SmoI CTYRAG 2 cut(s) 389, 1123
SpeI ACTAGT 1 cut(s) 904
Sse9I AATT 8 cut(s) 19, 288, 611, 897, 1148, 1268, 1532, 1555
SsiI CCGC 5 cut(s) 233, 1044, 1208, 1302, 1502
SspI AATATT 3 cut(s) 178, 401, 1117
SspMI CTAG 6 cut(s) 320, 801, 905, 998, 1242, 1370
StyD4I CCNGG 3 cut(s) 66, 554, 1108
StyI CCWWGG 4 cut(s) 48, 633, 1276, 1431
TaaI ACNGT 2 cut(s) 654, 857
TaiI ACGT 4 cut(s) 132, 409, 1021, 1446
TaqI TCGA 7 cut(s) 306, 502, 623, 864, 971, 1213, 1460
TaqII GACCGA 2 cut(s) 227, 999
TasI AATT 8 cut(s) 19, 288, 611, 897, 1148, 1268, 1532, 1555
TatI WGTACW 3 cut(s) 907, 1347, 1356
TauI GCSGC 1 cut(s) 1304
TfiI GAWTC 4 cut(s) 152, 797, 1093, 1326
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TscAI CASTG 2 cut(s) 657, 1270
TseFI GTSAC 1 cut(s) 934
TseI GCWGC 6 cut(s) 161, 269, 332, 569, 695, 1041
Tsp45I GTSAC 1 cut(s) 934
TspDTI ATGAA 5 cut(s) 144, 835, 1085, 1129, 1366
TspRI CASTG 2 cut(s) 657, 1270
VpaK11BI GGWCC 1 cut(s) 239
XbaI TCTAGA 1 cut(s) 800
XspI CTAG 6 cut(s) 320, 801, 905, 998, 1242, 1370
ZrmI AGTACT 3 cut(s) 909, 1349, 1358
Zsp2I ATGCAT 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.