Rh3CG263900

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000950
Physical Location & Seq
Reverse (-)
25767868 .. 25768772
905 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG263900.1

Sequence Viewer

Length: 717 bp
ATGAAGCTATTGCCTTGGTGCCCAACCTTTTTGGTATACAGTGTGGTAGAGGCATCAGTCAACACGTTTTATATAGAACAAACAGATCACTGGAATAGTTCTCCTGCCGTAATTATTCTCATGAATAGCAAATCATTCTCAAACTTCATCGTTCCATATCTTTTTCGGTTACTTGTTCCAAAGAAGTGCAGAGATGATACAGTGATGCAAATTGGCTACGGGTTGACTTGTTGTGTGCTTTGTTGCATTGCTGCTTGGCAGGTTGAGATCCACAGGATGAGTTCAGTAAAACACGGGTCCCATATTATTACCATCTTTTGGTTACTTCCACAGTTCTGCCTAGCGGGCTTCATGGAAGGGCTAGCTGTTGGGGGATTGAACCGTCTTGTTCTTGATCAAGTACCTGAGGATAATAAGCTACTCACTAGGTACGCACCTCGCATTGTTGACTTCGTCTTGGGTATTGGAAAGTTCATTACGGTCCTTATTCTTTGGGCCTGCAGACAAAGTTGGTTTCCAGGTGCCATGAAGACAAGCCGTCTGGACAAGTATTACAGATTCTTAACAATCTTGAGTATTGCTAACTTGATGTGTCACATCTGTGCCACCATTTACTTCTATGCCAATGGTGGTGAAGGATCACAAAGCAAAATGGTTGATGATGAGGTACTCGCCGGAGGTGGCGCCAGTGGATCCATCATCTCTCATTCTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

238

Amino Acids

26.64

Weight (kDa)

8.31

Isoelectric Point (pI)

45.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 250
AccB1I GGYRCC 3 cut(s) 18, 521, 683
AccB7I CCANNNNNTGG 1 cut(s) 318
AccI GTMKAC 1 cut(s) 36
AciI CCGC 1 cut(s) 344
AclWI GGATC 4 cut(s) 262, 646, 687, 700
AcyI GRCGYC 1 cut(s) 684
AfaI GTAC 3 cut(s) 402, 431, 669
AfiI CCNNNNNNNGG 1 cut(s) 318
AflIII ACRYGT 1 cut(s) 63
AgsI TTSAA 1 cut(s) 379
AhdI GACNNNNNGTC 1 cut(s) 537
AjnI CCWGG 1 cut(s) 517
AleI CACNNNNGTG 1 cut(s) 600
AluBI AGCT 4 cut(s) 7, 365, 418, 714
AluI AGCT 4 cut(s) 7, 365, 418, 714
AlwI GGATC 4 cut(s) 262, 646, 687, 700
AoxI GGCC 1 cut(s) 495
ApeKI GCWGC 1 cut(s) 251
AspLEI GCGC 1 cut(s) 686
AspS9I GGNCC 3 cut(s) 297, 481, 495
AsuHPI GGTGA 1 cut(s) 644
AsuNHI GCTAGC 1 cut(s) 361
AvaII GGWCC 2 cut(s) 297, 481
AxyI CCTNAGG 1 cut(s) 405
BaeGI GKGCMC 1 cut(s) 23
BamHI GGATCC 1 cut(s) 692
BanI GGYRCC 3 cut(s) 18, 521, 683
BbsI GAAGAC 1 cut(s) 536
BbvI GCAGC 1 cut(s) 238
BccI CCATC 2 cut(s) 320, 704
BceAI ACGGC 2 cut(s) 92, 522
BciT130I CCWGG 1 cut(s) 519
BclI TGATCA 1 cut(s) 394
BfaI CTAG 5 cut(s) 341, 362, 426, 711, 715
BfmI CTRYAG 1 cut(s) 499
BfoI RGCGCY 1 cut(s) 687
BfuAI ACCTGC 1 cut(s) 250
BglI GCCNNNNNGGC 1 cut(s) 345
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
Bme1390I CCNGG 1 cut(s) 519
Bme18I GGWCC 2 cut(s) 297, 481
BmeRI GACNNNNNGTC 1 cut(s) 537
BmgT120I GGNCC 3 cut(s) 297, 481, 495
BmiI GGNNCC 6 cut(s) 20, 298, 299, 523, 685, 694
BmrFI CCNGG 1 cut(s) 519
BmsI GCATC 2 cut(s) 62, 195
BmtI GCTAGC 1 cut(s) 365
BpiI GAAGAC 1 cut(s) 536
BpuEI CTTGAG 1 cut(s) 592
BsaHI GRCGYC 1 cut(s) 684
BsaJI CCNNGG 1 cut(s) 14
Bsc4I CCNNNNNNNGG 1 cut(s) 318
Bse1I ACTGG 2 cut(s) 95, 687
Bse21I CCTNAGG 1 cut(s) 405
Bse3DI GCAATG 1 cut(s) 246
BseBI CCWGG 1 cut(s) 519
BseDI CCNNGG 1 cut(s) 14
BseGI GGATG 1 cut(s) 282
BseLI CCNNNNNNNGG 1 cut(s) 318
BseMI GCAATG 1 cut(s) 246
BseMII CTCAG 1 cut(s) 396
BseNI ACTGG 2 cut(s) 95, 687
BseSI GKGCMC 1 cut(s) 23
BseXI GCAGC 1 cut(s) 238
BsgI GTGCAG 1 cut(s) 208
BshFI GGCC 1 cut(s) 497
BshNI GGYRCC 3 cut(s) 18, 521, 683
BsiSI CCGG 1 cut(s) 675
BslFI GGGAC 1 cut(s) 283
BslI CCNNNNNNNGG 1 cut(s) 318
BsmFI GGGAC 1 cut(s) 283
BsnI GGCC 1 cut(s) 497
Bsp1286I GDGCHC 1 cut(s) 23
Bsp143I GATC 5 cut(s) 85, 267, 394, 638, 692
BspACI CCGC 1 cut(s) 344
BspANI GGCC 1 cut(s) 497
BspCNI CTCAG 1 cut(s) 397
BspHI TCATGA 1 cut(s) 120
BspLI GGNNCC 6 cut(s) 20, 298, 299, 523, 685, 694
BspMAI CTGCAG 1 cut(s) 503
BspMI ACCTGC 1 cut(s) 250
BspOI GCTAGC 1 cut(s) 365
BspPI GGATC 4 cut(s) 262, 646, 687, 700
BspT107I GGYRCC 3 cut(s) 18, 521, 683
BsrDI GCAATG 1 cut(s) 246
BsrI ACTGG 2 cut(s) 95, 687
BssECI CCNNGG 1 cut(s) 14
BssMI GATC 5 cut(s) 85, 267, 394, 638, 692
BssNAI GTATAC 1 cut(s) 37
BssNI GRCGYC 1 cut(s) 684
BssT1I CCWWGG 1 cut(s) 14
Bst1107I GTATAC 1 cut(s) 37
Bst2UI CCWGG 1 cut(s) 519
Bst4CI ACNGT 5 cut(s) 41, 202, 333, 383, 481
BstACI GRCGYC 1 cut(s) 684
BstC8I GCNNGC 3 cut(s) 346, 363, 499
BstDEI CTNAG 1 cut(s) 405
BstF5I GGATG 1 cut(s) 282
BstH2I RGCGCY 1 cut(s) 687
BstHHI GCGC 1 cut(s) 686
BstKTI GATC 5 cut(s) 88, 270, 397, 641, 695
BstMBI GATC 5 cut(s) 85, 267, 394, 638, 692
BstMWI GCNNNNNNNGC 1 cut(s) 345
BstNI CCWGG 1 cut(s) 519
BstSCI CCNGG 1 cut(s) 517
BstSFI CTRYAG 1 cut(s) 499
BstSLI GKGCMC 1 cut(s) 23
BstV1I GCAGC 1 cut(s) 238
BstV2I GAAGAC 1 cut(s) 536
BstX2I RGATCY 2 cut(s) 267, 692
BstYI RGATCY 2 cut(s) 267, 692
BstZ17I GTATAC 1 cut(s) 37
Bsu36I CCTNAGG 1 cut(s) 405
BsuRI GGCC 1 cut(s) 497
BtsCI GGATG 1 cut(s) 282
BtsIMutI CAGTG 4 cut(s) 46, 88, 207, 694
BveI ACCTGC 1 cut(s) 250
Cac8I GCNNGC 3 cut(s) 346, 363, 499
CciI TCATGA 1 cut(s) 120
CfoI GCGC 1 cut(s) 686
Cfr13I GGNCC 3 cut(s) 297, 481, 495
Csp6I GTAC 3 cut(s) 401, 430, 668
CviAII CATG 3 cut(s) 121, 352, 526
CviJI RGCY 9 cut(s) 7, 216, 348, 361, 365, 418, 497, 537, 714
CviKI_1 RGCY 9 cut(s) 7, 216, 348, 361, 365, 418, 497, 537, 714
CviQI GTAC 3 cut(s) 401, 430, 668
DdeI CTNAG 1 cut(s) 405
DinI GGCGCC 1 cut(s) 685
DpnI GATC 5 cut(s) 87, 269, 396, 640, 694
DpnII GATC 5 cut(s) 85, 267, 394, 638, 692
DriI GACNNNNNGTC 1 cut(s) 537
Eam1105I GACNNNNNGTC 1 cut(s) 537
Eco130I CCWWGG 1 cut(s) 14
Eco47I GGWCC 2 cut(s) 297, 481
Eco81I CCTNAGG 1 cut(s) 405
EcoO109I RGGNCCY 1 cut(s) 297
EcoRII CCWGG 1 cut(s) 517
EcoT14I CCWWGG 1 cut(s) 14
EgeI GGCGCC 1 cut(s) 685
EheI GGCGCC 1 cut(s) 685
ErhI CCWWGG 1 cut(s) 14
FaeI CATG 3 cut(s) 124, 355, 529
FaiI YATR 9 cut(s) 37, 72, 74, 122, 157, 303, 353, 527, 621
FaqI GGGAC 1 cut(s) 283
FatI CATG 3 cut(s) 120, 351, 525
FauI CCCGC 1 cut(s) 337
FbaI TGATCA 1 cut(s) 394
FblI GTMKAC 1 cut(s) 36
Fnu4HI GCNGC 1 cut(s) 252
FokI GGATG 1 cut(s) 289
Fsp4HI GCNGC 1 cut(s) 252
FspBI CTAG 5 cut(s) 341, 362, 426, 711, 715
GlaI GCGC 1 cut(s) 685
GluI GCNGC 1 cut(s) 252
HaeII RGCGCY 1 cut(s) 687
HaeIII GGCC 1 cut(s) 497
HapII CCGG 1 cut(s) 675
HhaI GCGC 1 cut(s) 686
Hin1I GRCGYC 1 cut(s) 684
Hin1II CATG 3 cut(s) 124, 355, 529
Hin6I GCGC 1 cut(s) 684
HinP1I GCGC 1 cut(s) 684
HincII GTYRAC 3 cut(s) 61, 225, 448
HindII GTYRAC 3 cut(s) 61, 225, 448
HinfI GANTC 1 cut(s) 558
HpaII CCGG 1 cut(s) 675
HphI GGTGA 1 cut(s) 644
Hpy166II GTNNAC 4 cut(s) 37, 61, 225, 448
Hpy188III TCNNGA 4 cut(s) 121, 392, 542, 571
Hpy8I GTNNAC 4 cut(s) 37, 61, 225, 448
HpyAV CCTTC 2 cut(s) 350, 629
HpyCH4III ACNGT 5 cut(s) 41, 202, 333, 383, 481
HpyCH4IV ACGT 1 cut(s) 65
HpyCH4V TGCA 4 cut(s) 189, 208, 246, 501
HpyF10VI GCNNNNNNNGC 1 cut(s) 345
HpyF3I CTNAG 1 cut(s) 405
HpySE526I ACGT 1 cut(s) 65
Hsp92I GRCGYC 1 cut(s) 684
Hsp92II CATG 3 cut(s) 124, 355, 529
HspAI GCGC 1 cut(s) 684
KasI GGCGCC 1 cut(s) 683
KflI GGGWCCC 1 cut(s) 297
Ksp22I TGATCA 1 cut(s) 394
Kzo9I GATC 5 cut(s) 85, 267, 394, 638, 692
Lsp1109I GCAGC 1 cut(s) 238
LweI GCATC 2 cut(s) 62, 195
MaeI CTAG 5 cut(s) 341, 362, 426, 711, 715
MaeII ACGT 1 cut(s) 65
MaeIII GTNAC 3 cut(s) 168, 321, 593
MalI GATC 5 cut(s) 87, 269, 396, 640, 694
MboI GATC 5 cut(s) 85, 267, 394, 638, 692
MboII GAAGA 1 cut(s) 541
MflI RGATCY 2 cut(s) 267, 692
MhlI GDGCHC 1 cut(s) 23
MluCI AATT 2 cut(s) 111, 210
Mly113I GGCGCC 1 cut(s) 684
MnlI CCTC 5 cut(s) 43, 400, 447, 658, 671
MseI TTAA 1 cut(s) 563
MslI CAYNNNNRTG 1 cut(s) 600
MspI CCGG 1 cut(s) 675
MspR9I CCNGG 1 cut(s) 519
MvaI CCWGG 1 cut(s) 519
MwoI GCNNNNNNNGC 1 cut(s) 345
NarI GGCGCC 1 cut(s) 684
NdeII GATC 5 cut(s) 85, 267, 394, 638, 692
NheI GCTAGC 1 cut(s) 361
NlaIII CATG 3 cut(s) 124, 355, 529
NlaIV GGNNCC 6 cut(s) 20, 298, 299, 523, 685, 694
NmuCI GTSAC 1 cut(s) 593
OliI CACNNNNGTG 1 cut(s) 600
PagI TCATGA 1 cut(s) 120
PfeI GAWTC 1 cut(s) 558
PflFI GACNNNGTC 1 cut(s) 452
PflMI CCANNNNNTGG 1 cut(s) 318
PkrI GCNGC 1 cut(s) 253
PluTI GGCGCC 1 cut(s) 687
PpuMI RGGWCCY 1 cut(s) 297
Psp5II RGGWCCY 1 cut(s) 297
Psp6I CCWGG 1 cut(s) 517
PspGI CCWGG 1 cut(s) 517
PspN4I GGNNCC 6 cut(s) 20, 298, 299, 523, 685, 694
PspPI GGNCC 3 cut(s) 297, 481, 495
PspPPI RGGWCCY 1 cut(s) 297
PstI CTGCAG 1 cut(s) 503
PsuI RGATCY 2 cut(s) 267, 692
PsyI GACNNNGTC 1 cut(s) 452
RsaI GTAC 3 cut(s) 402, 431, 669
RsaNI GTAC 3 cut(s) 401, 430, 668
RseI CAYNNNNRTG 1 cut(s) 600
SaqAI TTAA 1 cut(s) 563
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 5 cut(s) 85, 267, 394, 638, 692
Sau96I GGNCC 3 cut(s) 297, 481, 495
ScrFI CCNGG 1 cut(s) 519
SduI GDGCHC 1 cut(s) 23
SfaNI GCATC 2 cut(s) 62, 195
SfcI CTRYAG 1 cut(s) 499
SfoI GGCGCC 1 cut(s) 685
SinI GGWCC 2 cut(s) 297, 481
SmiMI CAYNNNNRTG 1 cut(s) 600
SmlI CTYRAG 1 cut(s) 571
SmoI CTYRAG 1 cut(s) 571
Sse9I AATT 2 cut(s) 111, 210
SsiI CCGC 1 cut(s) 344
SspDI GGCGCC 1 cut(s) 683
SspMI CTAG 5 cut(s) 341, 362, 426, 711, 715
StyD4I CCNGG 1 cut(s) 517
StyI CCWWGG 1 cut(s) 14
TaaI ACNGT 5 cut(s) 41, 202, 333, 383, 481
TaiI ACGT 1 cut(s) 68
TasI AATT 2 cut(s) 111, 210
TfiI GAWTC 1 cut(s) 558
Tru1I TTAA 1 cut(s) 563
Tru9I TTAA 1 cut(s) 563
TscAI CASTG 4 cut(s) 46, 95, 207, 694
TseFI GTSAC 1 cut(s) 593
TseI GCWGC 1 cut(s) 251
Tsp45I GTSAC 1 cut(s) 593
TspDTI ATGAA 6 cut(s) 17, 136, 137, 340, 463, 542
TspRI CASTG 4 cut(s) 46, 95, 207, 694
Tth111I GACNNNGTC 1 cut(s) 452
Van91I CCANNNNNTGG 1 cut(s) 318
VpaK11BI GGWCC 2 cut(s) 297, 481
XmiI GTMKAC 1 cut(s) 36
XspI CTAG 5 cut(s) 341, 362, 426, 711, 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.