RLG00000010048

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000950
Physical Location & Seq
Forward (+)
62165740 .. 62168250
2511 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010048

Sequence Viewer

Length: 1455 bp
ATGTGGAAGACAGTAGCAAATTGGTTCGGAAACTACCTCTACTTTTCCAAGGCTACTTTATGCATCCGGGGTTTGGTTTTCAGTCATAACTTTGTAGGCCGTGCGGTATCGTCCATCTTGATCACGTACCTCACGCTTCATATTATGAAGAACTATCAAATGGCCGCTGTACTTATAAATGTGGTAGACGGGGCAGCAGATATCATGGTCATCGTCCTTGCTTATCTATCACACAAAATAGGTCATTTCAGAATGGTTGTCTTCACAAGTTTTGCCTATAGTCTTGGACTGGCTCTATTATGGATTTCAGCCAAGTTTATACGTCCGGGCGCAGATGCAGCAGATGATTTTTTCTATTTGGCTGCAGTACTATTGGCAATAGGTGAAGCTGGAAGGCCTGCTGCTATACCCAAATTTCTTGACGATCAATATATAAAAGAACAGAGACAAAGAGATCATGAGTACACAAAAAAAGACGAAGAACGATTGCAAAGCCGCAAAGATGCTTTGTGGAGCCATCCCTGGTTTCTCGGTGCAGTGGCAGCTCTTTTCATTCCTGGAGAGGCGCGTTGGGAAACTGTCTTCCTGATCTCCATGATTGCAATGGGGGTTTGTTTATTATTGTTCTGGTTTGGCAAAACCTTTTATTCAGTCCCATCTTCAGAAGAAACAGCACCAAAAGGGAAGTTTGGGGTCACACCGAAAGAAAATGGACACCGTTTTGCAGAAATGTTAGCTATGAGTTTGGCCTTCGTTGCATACAGTCTGGTGGAGGCAACGGGATCCACGTTCTTTTTTGAACAAACAACTTTCTTGGAGAATCATGTAGGAAATTTCACAGTTCCTGTCGTATATCTCACTGTACTTCAGTCCTTTTCAAAGTTCATAATGCAACATCTTTGGGGGATACTAATTCCAAAGCAGCGAAGTAGTGTTGCAACATTGGTTAAAATTGGGTGCGGTTTGGTTCTTTCTGTTTTATGCTGTGTCATTGCTTGGCGAATTGAGATTCGTAGGAAGAGTAAAATCAAGGAGGAAGCATATGACAAAGATACTATTTCCATGAGCATCCTTTGGTTACTTCCACAATTCTCTCTGCTAGGGCTCATGAGAGGGTTAGCCGAAGAGGGATTGGTCGAGTTTTTTGCGGAACAAGTAGTTGACGATGATAAAGAAGTGATGCTTAGGTATTATGGACCTCACGCATTTGACTTCGTCCTGGGTATTGGAACGTTACTGACCGCTGTTAGTATTTTGGGGTTTAGACGAACTTGGTTGGATAATGATATATATAAGAATCGTCTAGATAAGTATTACAGGGGATTAGTATTCCTAGGTGTCGCTAACTTTGGCTACTACTTGTGTGTCACCCTTTACTTTTACACCAAGCATGAGTCAGAAATTTCTGCCGAAGAAACAAATGAGGAAGAAACTGCAAAGAAAGGGGAGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

485

Amino Acids

55.01

Weight (kDa)

6.84

Isoelectric Point (pI)

33.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 31 - 333 3.4e-06 Major Facilitator Superfamily
PTR2 PF00854 83 - 224 5.3e-07 POT family
PTR2 PF00854 238 - 395 9.9e-13 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 176
AccI GTMKAC 1 cut(s) 186
AccII CGCG 1 cut(s) 568
AciI CCGC 6 cut(s) 104, 165, 496, 960, 1148, 1242
AclI AACGTT 1 cut(s) 1232
AclWI GGATC 2 cut(s) 777, 790
AcoI YGGCCR 1 cut(s) 162
AcsI RAATTY 3 cut(s) 413, 832, 1401
AcuI CTGAAG 2 cut(s) 645, 851
AfaI GTAC 5 cut(s) 128, 171, 369, 464, 864
AfiI CCNNNNNNNGG 1 cut(s) 73
AgsI TTSAA 2 cut(s) 800, 879
AjnI CCWGG 3 cut(s) 521, 556, 1218
AluBI AGCT 3 cut(s) 389, 545, 737
AluI AGCT 3 cut(s) 389, 545, 737
Alw26I GTCTC 1 cut(s) 439
AlwI GGATC 2 cut(s) 777, 790
AlwNI CAGNNNCTG 1 cut(s) 845
AoxI GGCC 4 cut(s) 97, 162, 395, 747
ApeKI GCWGC 6 cut(s) 194, 338, 362, 401, 542, 922
ApoI RAATTY 3 cut(s) 413, 832, 1401
AspA2I CCTAGG 1 cut(s) 1333
AspLEI GCGC 2 cut(s) 332, 568
AspS9I GGNCC 1 cut(s) 1196
AsuC2I CCSGG 2 cut(s) 68, 327
AsuHPI GGTGA 2 cut(s) 395, 1360
AvaII GGWCC 1 cut(s) 1196
AvrII CCTAGG 1 cut(s) 1333
BamHI GGATCC 1 cut(s) 782
BanII GRGCYC 1 cut(s) 1107
BbsI GAAGAC 3 cut(s) 14, 253, 574
BbvI GCAGC 6 cut(s) 206, 349, 350, 388, 554, 934
BccI CCATC 3 cut(s) 122, 525, 664
BceAI ACGGC 1 cut(s) 84
BcgI CGANNNNNNTGC 2 cut(s) 1127, 1161
BciT130I CCWGG 3 cut(s) 523, 558, 1220
BciVI GTATCC 1 cut(s) 900
BclI TGATCA 1 cut(s) 120
BcnI CCSGG 2 cut(s) 68, 327
BcoDI GTCTC 1 cut(s) 439
BfaI CTAG 3 cut(s) 1100, 1304, 1334
BfmI CTRYAG 2 cut(s) 277, 363
BfuI GTATCC 1 cut(s) 900
BisI GCNGC 8 cut(s) 165, 195, 339, 363, 402, 496, 543, 923
BlnI CCTAGG 1 cut(s) 1333
BlsI GCNGC 8 cut(s) 166, 196, 340, 364, 403, 497, 544, 924
BmcAI AGTACT 1 cut(s) 369
Bme1390I CCNGG 5 cut(s) 68, 327, 523, 558, 1220
Bme18I GGWCC 1 cut(s) 1196
BmgT120I GGNCC 1 cut(s) 1196
BmiI GGNNCC 2 cut(s) 515, 784
BmrFI CCNGG 5 cut(s) 68, 327, 523, 558, 1220
BmsI GCATC 5 cut(s) 72, 325, 493, 1077, 1170
BpiI GAAGAC 3 cut(s) 14, 253, 574
BpmI CTGGAG 1 cut(s) 579
Bpu10I CCTNAGC 1 cut(s) 1184
BpuMI CCSGG 2 cut(s) 68, 327
BsaAI YACGTR 1 cut(s) 126
BsaJI CCNNGG 5 cut(s) 48, 67, 521, 1219, 1333
Bsc4I CCNNNNNNNGG 1 cut(s) 73
Bse1I ACTGG 1 cut(s) 294
Bse3DI GCAATG 2 cut(s) 609, 990
BseBI CCWGG 3 cut(s) 523, 558, 1220
BseDI CCNNGG 5 cut(s) 48, 67, 521, 1219, 1333
BseGI GGATG 3 cut(s) 63, 517, 1068
BseLI CCNNNNNNNGG 1 cut(s) 73
BseMI GCAATG 2 cut(s) 609, 990
BseNI ACTGG 1 cut(s) 294
BseXI GCAGC 6 cut(s) 206, 349, 350, 388, 554, 934
BsgI GTGCAG 1 cut(s) 555
Bsh1236I CGCG 1 cut(s) 568
BshFI GGCC 4 cut(s) 99, 164, 397, 749
BsiSI CCGG 2 cut(s) 67, 326
BslFI GGGAC 1 cut(s) 638
BslI CCNNNNNNNGG 1 cut(s) 73
BsmAI GTCTC 1 cut(s) 439
BsmFI GGGAC 1 cut(s) 638
BsnI GGCC 4 cut(s) 99, 164, 397, 749
Bsp1286I GDGCHC 1 cut(s) 1107
Bsp143I GATC 5 cut(s) 120, 424, 454, 588, 782
BspACI CCGC 6 cut(s) 104, 165, 496, 960, 1148, 1242
BspANI GGCC 4 cut(s) 99, 164, 397, 749
BspFNI CGCG 1 cut(s) 568
BspHI TCATGA 2 cut(s) 457, 1107
BspLI GGNNCC 2 cut(s) 515, 784
BspMAI CTGCAG 1 cut(s) 367
BspPI GGATC 2 cut(s) 777, 790
BsrDI GCAATG 2 cut(s) 609, 990
BsrI ACTGG 1 cut(s) 294
BssECI CCNNGG 5 cut(s) 48, 67, 521, 1219, 1333
BssMI GATC 5 cut(s) 120, 424, 454, 588, 782
BssT1I CCWWGG 2 cut(s) 48, 1333
Bst2UI CCWGG 3 cut(s) 523, 558, 1220
Bst4CI ACNGT 6 cut(s) 13, 580, 719, 764, 841, 862
Bst6I CTCTTC 2 cut(s) 1013, 1119
BstBAI YACGTR 1 cut(s) 126
BstC8I GCNNGC 1 cut(s) 399
BstDEI CTNAG 1 cut(s) 1184
BstF5I GGATG 3 cut(s) 63, 517, 1068
BstFNI CGCG 1 cut(s) 568
BstHHI GCGC 2 cut(s) 332, 568
BstKTI GATC 5 cut(s) 123, 427, 457, 591, 785
BstMAI GTCTC 1 cut(s) 439
BstMBI GATC 5 cut(s) 120, 424, 454, 588, 782
BstMWI GCNNNNNNNGC 3 cut(s) 338, 542, 755
BstNI CCWGG 3 cut(s) 523, 558, 1220
BstSCI CCNGG 5 cut(s) 66, 325, 521, 556, 1218
BstSFI CTRYAG 2 cut(s) 277, 363
BstUI CGCG 1 cut(s) 568
BstV1I GCAGC 6 cut(s) 206, 349, 350, 388, 554, 934
BstV2I GAAGAC 3 cut(s) 14, 253, 574
BstX2I RGATCY 1 cut(s) 782
BstYI RGATCY 1 cut(s) 782
BsuI GTATCC 1 cut(s) 900
BsuRI GGCC 4 cut(s) 99, 164, 397, 749
BtsCI GGATG 3 cut(s) 63, 517, 1068
BtsI GCAGTG 1 cut(s) 543
BtsIMutI CAGTG 2 cut(s) 543, 858
Cac8I GCNNGC 1 cut(s) 399
CaiI CAGNNNCTG 1 cut(s) 845
CciI TCATGA 2 cut(s) 457, 1107
CfoI GCGC 2 cut(s) 332, 568
Cfr13I GGNCC 1 cut(s) 1196
Csp6I GTAC 5 cut(s) 127, 170, 368, 463, 863
CviAII CATG 7 cut(s) 205, 458, 595, 824, 1063, 1108, 1391
CviQI GTAC 5 cut(s) 127, 170, 368, 463, 863
DdeI CTNAG 1 cut(s) 1184
DpnI GATC 5 cut(s) 122, 426, 456, 590, 784
DpnII GATC 5 cut(s) 120, 424, 454, 588, 782
EaeI YGGCCR 1 cut(s) 162
Eam1104I CTCTTC 2 cut(s) 1013, 1119
EarI CTCTTC 2 cut(s) 1013, 1119
Eco130I CCWWGG 2 cut(s) 48, 1333
Eco147I AGGCCT 1 cut(s) 397
Eco24I GRGCYC 1 cut(s) 1107
Eco32I GATATC 1 cut(s) 202
Eco47I GGWCC 1 cut(s) 1196
Eco57I CTGAAG 2 cut(s) 645, 851
EcoRII CCWGG 3 cut(s) 521, 556, 1218
EcoRV GATATC 1 cut(s) 202
EcoT14I CCWWGG 2 cut(s) 48, 1333
EcoT22I ATGCAT 1 cut(s) 65
EcoT38I GRGCYC 1 cut(s) 1107
ErhI CCWWGG 2 cut(s) 48, 1333
FaeI CATG 7 cut(s) 208, 461, 598, 827, 1066, 1111, 1394
FalI AAGNNNNNCTT 2 cut(s) 1167, 1199
FaqI GGGAC 1 cut(s) 638
FatI CATG 7 cut(s) 204, 457, 594, 823, 1062, 1107, 1390
FauNDI CATATG 1 cut(s) 1042
FbaI TGATCA 1 cut(s) 120
FblI GTMKAC 1 cut(s) 186
Fnu4HI GCNGC 8 cut(s) 165, 195, 339, 363, 402, 496, 543, 923
FokI GGATG 3 cut(s) 50, 504, 1055
FriOI GRGCYC 1 cut(s) 1107
Fsp4HI GCNGC 8 cut(s) 165, 195, 339, 363, 402, 496, 543, 923
FspBI CTAG 3 cut(s) 1100, 1304, 1334
GlaI GCGC 2 cut(s) 331, 567
GluI GCNGC 8 cut(s) 165, 195, 339, 363, 402, 496, 543, 923
GsuI CTGGAG 1 cut(s) 579
HaeIII GGCC 4 cut(s) 99, 164, 397, 749
HapII CCGG 2 cut(s) 67, 326
HhaI GCGC 2 cut(s) 332, 568
Hin1II CATG 7 cut(s) 208, 461, 598, 827, 1066, 1111, 1394
Hin6I GCGC 2 cut(s) 330, 566
HinP1I GCGC 2 cut(s) 330, 566
HincII GTYRAC 1 cut(s) 1162
HindII GTYRAC 1 cut(s) 1162
HinfI GANTC 4 cut(s) 820, 1009, 1297, 1394
HpaII CCGG 2 cut(s) 67, 326
HphI GGTGA 2 cut(s) 395, 1360
Hpy166II GTNNAC 3 cut(s) 187, 465, 1162
Hpy188I TCNGA 4 cut(s) 29, 251, 664, 1399
Hpy188III TCNNGA 6 cut(s) 118, 419, 458, 586, 1108, 1304
Hpy8I GTNNAC 3 cut(s) 187, 465, 1162
HpyAV CCTTC 2 cut(s) 387, 760
HpyCH4III ACNGT 6 cut(s) 13, 580, 719, 764, 841, 862
HpyCH4IV ACGT 4 cut(s) 125, 322, 788, 1232
HpyF10VI GCNNNNNNNGC 3 cut(s) 338, 542, 755
HpyF3I CTNAG 1 cut(s) 1184
HpySE526I ACGT 4 cut(s) 125, 322, 788, 1232
Hsp92II CATG 7 cut(s) 208, 461, 598, 827, 1066, 1111, 1394
HspAI GCGC 2 cut(s) 330, 566
Ksp22I TGATCA 1 cut(s) 120
Kzo9I GATC 5 cut(s) 120, 424, 454, 588, 782
LmnI GCTCC 1 cut(s) 513
Lsp1109I GCAGC 6 cut(s) 206, 349, 350, 388, 554, 934
LweI GCATC 5 cut(s) 72, 325, 493, 1077, 1170
MaeI CTAG 3 cut(s) 1100, 1304, 1334
MaeII ACGT 4 cut(s) 125, 322, 788, 1232
MaeIII GTNAC 4 cut(s) 694, 1077, 1233, 1366
MalI GATC 5 cut(s) 122, 426, 456, 590, 784
MboI GATC 5 cut(s) 120, 424, 454, 588, 782
MflI RGATCY 1 cut(s) 782
MhlI GDGCHC 1 cut(s) 1107
MluCI AATT 8 cut(s) 19, 413, 832, 912, 951, 1002, 1088, 1401
MlyI GAGTC 1 cut(s) 1403
MmeI TCCRAC 1 cut(s) 1257
MnlI CCTC 9 cut(s) 47, 140, 556, 766, 1027, 1106, 1120, 1209, 1417
Mph1103I ATGCAT 1 cut(s) 65
MseI TTAA 1 cut(s) 948
MspA1I CMGCKG 2 cut(s) 167, 1244
MspI CCGG 2 cut(s) 67, 326
MspR9I CCNGG 5 cut(s) 68, 327, 523, 558, 1220
MvaI CCWGG 3 cut(s) 523, 558, 1220
MvnI CGCG 1 cut(s) 568
MwoI GCNNNNNNNGC 3 cut(s) 338, 542, 755
NciI CCSGG 2 cut(s) 68, 327
NdeI CATATG 1 cut(s) 1042
NdeII GATC 5 cut(s) 120, 424, 454, 588, 782
NlaIII CATG 7 cut(s) 208, 461, 598, 827, 1066, 1111, 1394
NlaIV GGNNCC 2 cut(s) 515, 784
NmuCI GTSAC 2 cut(s) 694, 1366
NsiI ATGCAT 1 cut(s) 65
PagI TCATGA 2 cut(s) 457, 1107
PceI AGGCCT 1 cut(s) 397
PcsI WCGNNNNNNNCGW 1 cut(s) 785
PfeI GAWTC 3 cut(s) 820, 1009, 1297
PflFI GACNNNGTC 1 cut(s) 1214
PfoI TCCNGGA 1 cut(s) 556
PkrI GCNGC 8 cut(s) 166, 196, 340, 364, 403, 497, 544, 924
PleI GAGTC 1 cut(s) 1402
PpsI GAGTC 1 cut(s) 1402
Ppu21I YACGTR 1 cut(s) 126
PsiI TTATAA 1 cut(s) 176
Psp1406I AACGTT 1 cut(s) 1232
Psp6I CCWGG 3 cut(s) 521, 556, 1218
PspGI CCWGG 3 cut(s) 521, 556, 1218
PspN4I GGNNCC 2 cut(s) 515, 784
PspPI GGNCC 1 cut(s) 1196
PstI CTGCAG 1 cut(s) 367
PstNI CAGNNNCTG 1 cut(s) 845
PsuI RGATCY 1 cut(s) 782
PsyI GACNNNGTC 1 cut(s) 1214
RsaI GTAC 5 cut(s) 128, 171, 369, 464, 864
RsaNI GTAC 5 cut(s) 127, 170, 368, 463, 863
SaqAI TTAA 1 cut(s) 948
SatI GCNGC 8 cut(s) 165, 195, 339, 363, 402, 496, 543, 923
Sau3AI GATC 5 cut(s) 120, 424, 454, 588, 782
Sau96I GGNCC 1 cut(s) 1196
ScaI AGTACT 1 cut(s) 369
SchI GAGTC 1 cut(s) 1403
ScrFI CCNGG 5 cut(s) 68, 327, 523, 558, 1220
SduI GDGCHC 1 cut(s) 1107
SfaNI GCATC 5 cut(s) 72, 325, 493, 1077, 1170
SfcI CTRYAG 2 cut(s) 277, 363
SinI GGWCC 1 cut(s) 1196
Sse9I AATT 8 cut(s) 19, 413, 832, 912, 951, 1002, 1088, 1401
SseBI AGGCCT 1 cut(s) 397
SsiI CCGC 6 cut(s) 104, 165, 496, 960, 1148, 1242
SspMI CTAG 3 cut(s) 1100, 1304, 1334
StuI AGGCCT 1 cut(s) 397
StyD4I CCNGG 5 cut(s) 66, 325, 521, 556, 1218
StyI CCWWGG 2 cut(s) 48, 1333
TaaI ACNGT 6 cut(s) 13, 580, 719, 764, 841, 862
TaiI ACGT 4 cut(s) 128, 325, 791, 1235
TaqI TCGA 1 cut(s) 1137
TasI AATT 8 cut(s) 19, 413, 832, 912, 951, 1002, 1088, 1401
TatI WGTACW 4 cut(s) 169, 367, 462, 862
TauI GCSGC 2 cut(s) 167, 498
TfiI GAWTC 3 cut(s) 820, 1009, 1297
Tru1I TTAA 1 cut(s) 948
Tru9I TTAA 1 cut(s) 948
TscAI CASTG 2 cut(s) 543, 865
TseFI GTSAC 2 cut(s) 694, 1366
TseI GCWGC 6 cut(s) 194, 338, 362, 401, 542, 922
Tsp45I GTSAC 2 cut(s) 694, 1366
TspDTI ATGAA 4 cut(s) 128, 161, 541, 874
TspRI CASTG 2 cut(s) 543, 865
Tth111I GACNNNGTC 1 cut(s) 1214
VpaK11BI GGWCC 1 cut(s) 1196
XapI RAATTY 3 cut(s) 413, 832, 1401
XbaI TCTAGA 1 cut(s) 1303
XcmI CCANNNNNNNNNTGG 1 cut(s) 601
XmaJI CCTAGG 1 cut(s) 1333
XmiI GTMKAC 1 cut(s) 186
XspI CTAG 3 cut(s) 1100, 1304, 1334
ZrmI AGTACT 1 cut(s) 369
Zsp2I ATGCAT 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.