RchiOBHm_Chr3g0477071

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000950
Physical Location & Seq
Forward (+)
22937226 .. 22938665
1440 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44241

Sequence Viewer

Length: 1251 bp
ATGAGTGACGGTACTGCATCTAGGGTATTCTATGGAGCTATGGTACTCGTAACATTAGGCGAAGCTGGGCGGTGGGCTGCTTTGCGAGAATTTCTGGATGAACAATATTCAAGAGAACAAAATCATGCGGAACGCACATATGATGAAAATAAGGATAAGAAAGAAGCTTTGTGGATGCTTCCTTGGTTTTTAGGTGCAGTGATTCCTCTTTTCCTTTTAAAAACAACTTGGCCACAAAGATTCATGATATCAACAATTGCAATGACGGTTTCTTATTTAGGATTCTTGTTGGGCTTTCCCTATTATTTCACTTACAATATGACTAATACTGAACAAGGCCAAGATGCTCGCCCAGAAGAAGTCAATTATCTAGAACAAGCACCAAGAGTCCCTGAACCAACAAGGTCAGGAAATGTACGGAGACTGATCAATATATTAAGGAAAGATGAACGTTTTCTCATAGAGGCATTAGCTATATGGTTAGCCTTCCTCCTTGCATACAGTGTTGTAAAGGCAGCAGGAAGCACGTTCTTTTTTCAACGAATGGATTACTTGGATAACCCTTTCGATAACTATGATCCTGCAGTCTATCTCAATGTGTTTGCCTCATTTTCAAAGTGGTTGATCTCATTTCTATGGAACTTAATTCCAAGGAATTGGAAACCATCGCGGCTGAGGATTTCGTACGGAATGGCTTGTATTGTGCTTTGTTGTCTTGTTGCTTGGCAAGTTGAGAGCTACAGGTTAAACACTACAAATATGAGCATCTTTTGGTTGGTTCCTCAGTTCTTCTATTTAGGAGTCATGGAAGGCCTAGCCATGTTTGGAATGATCGATTTTCTTGTTGATCGAGTGTCTGCAGGTGATAAAGTAATGGTCGCATATTATGGATCCCACACCACTGTGTTGATCATAGGTATTGGAAAAATACTTGTTGGTCTTAGTGTTTTGGCGCTCAGAGGAAGCTGGTTTGATGACAACAGCTTAGATGCCAGTCATCTTCATAAATATTACAGAGCATTAACAACCTTAACTTCTGTTGTCTTCTTCTTCCACTGTTGTATCGCCTTTTACTATTACACTAGGGAAGAATTACAAGATGAGACGCCTTCATCGGTGACAATTGAGATGGTGAATCAGAATCAGCCACAGATAGACCCGTCGCCACATAACCCTGATAATGCATTTACTGAGACGCTTGATGACAGAGTTGGGTTATCTTATTTATTGGGACAGTTTGTGGGTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

416

Amino Acids

47.96

Weight (kDa)

5.37

Isoelectric Point (pI)

40.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 851
Acc36I ACCTGC 1 cut(s) 851
AccII CGCG 1 cut(s) 670
AciI CCGC 3 cut(s) 70, 128, 670
AclI AACGTT 1 cut(s) 451
AclWI GGATC 3 cut(s) 572, 885, 898
AcoI YGGCCR 1 cut(s) 230
AcsI RAATTY 1 cut(s) 89
AcyI GRCGYC 1 cut(s) 1106
AfaI GTAC 4 cut(s) 13, 45, 417, 686
AgsI TTSAA 3 cut(s) 111, 539, 615
AleI CACNNNNGTG 1 cut(s) 902
AluBI AGCT 7 cut(s) 38, 65, 167, 473, 738, 966, 984
AluI AGCT 7 cut(s) 38, 65, 167, 473, 738, 966, 984
Alw26I GTCTC 3 cut(s) 415, 1097, 1187
AlwI GGATC 3 cut(s) 572, 885, 898
AoxI GGCC 3 cut(s) 230, 337, 811
ApeKI GCWGC 2 cut(s) 77, 515
ApoI RAATTY 1 cut(s) 89
Asp700I GAANNNNTTC 1 cut(s) 453
AspLEI GCGC 1 cut(s) 955
AsuHPI GGTGA 3 cut(s) 875, 1129, 1144
BaeI ACNNNNGTAYC 2 cut(s) 1045, 1078
BalI TGGCCA 1 cut(s) 232
BamHI GGATCC 1 cut(s) 890
BbsI GAAGAC 1 cut(s) 1036
BbvCI CCTCAGC 1 cut(s) 674
BbvI GCAGC 2 cut(s) 64, 527
BccI CCATC 2 cut(s) 673, 1123
BclI TGATCA 2 cut(s) 426, 909
BcoDI GTCTC 3 cut(s) 415, 1097, 1187
BfaI CTAG 4 cut(s) 21, 371, 815, 1083
BfmI CTRYAG 3 cut(s) 582, 739, 858
BfoI RGCGCY 1 cut(s) 956
BfuAI ACCTGC 1 cut(s) 851
BisI GCNGC 3 cut(s) 78, 516, 671
BlsI GCNGC 3 cut(s) 79, 517, 672
BmiI GGNNCC 2 cut(s) 780, 892
BmsI GCATC 5 cut(s) 26, 165, 334, 774, 979
BpiI GAAGAC 1 cut(s) 1036
Bpu10I CCTNAGC 1 cut(s) 674
Bsa29I ATCGAT 1 cut(s) 834
BsaHI GRCGYC 1 cut(s) 1106
BsaJI CCNNGG 2 cut(s) 182, 650
BsaXI ACNNNNNCTCC 2 cut(s) 27, 57
Bse1I ACTGG 1 cut(s) 993
Bse3DI GCAATG 1 cut(s) 267
BseCI ATCGAT 1 cut(s) 834
BseDI CCNNGG 2 cut(s) 182, 650
BseGI GGATG 2 cut(s) 103, 180
BseMI GCAATG 1 cut(s) 267
BseMII CTCAG 4 cut(s) 665, 797, 970, 1182
BseNI ACTGG 1 cut(s) 993
BseXI GCAGC 2 cut(s) 64, 527
BseYI CCCAGC 1 cut(s) 65
BsgI GTGCAG 1 cut(s) 216
Bsh1236I CGCG 1 cut(s) 670
BshFI GGCC 3 cut(s) 232, 339, 813
BshVI ATCGAT 1 cut(s) 834
BsiWI CGTACG 1 cut(s) 684
BslFI GGGAC 2 cut(s) 374, 1245
BsmAI GTCTC 3 cut(s) 415, 1097, 1187
BsmBI CGTCTC 2 cut(s) 1097, 1187
BsmFI GGGAC 2 cut(s) 374, 1245
BsnI GGCC 3 cut(s) 232, 339, 813
Bsp143I GATC 7 cut(s) 426, 577, 624, 831, 847, 890, 909
BspACI CCGC 3 cut(s) 70, 128, 670
BspANI GGCC 3 cut(s) 232, 339, 813
BspCNI CTCAG 4 cut(s) 666, 796, 969, 1183
BspDI ATCGAT 1 cut(s) 834
BspFNI CGCG 1 cut(s) 670
BspHI TCATGA 1 cut(s) 243
BspLI GGNNCC 2 cut(s) 780, 892
BspMAI CTGCAG 2 cut(s) 586, 862
BspMI ACCTGC 1 cut(s) 851
BspPI GGATC 3 cut(s) 572, 885, 898
BsrDI GCAATG 1 cut(s) 267
BsrI ACTGG 1 cut(s) 993
BssECI CCNNGG 2 cut(s) 182, 650
BssMI GATC 7 cut(s) 426, 577, 624, 831, 847, 890, 909
BssNI GRCGYC 1 cut(s) 1106
BssT1I CCWWGG 2 cut(s) 182, 650
Bst4CI ACNGT 6 cut(s) 11, 268, 503, 904, 1058, 1236
BstACI GRCGYC 1 cut(s) 1106
BstC8I GCNNGC 1 cut(s) 349
BstDEI CTNAG 6 cut(s) 674, 783, 941, 956, 985, 1191
BstF5I GGATG 2 cut(s) 103, 180
BstFNI CGCG 1 cut(s) 670
BstH2I RGCGCY 1 cut(s) 956
BstHHI GCGC 1 cut(s) 955
BstKTI GATC 7 cut(s) 429, 580, 627, 834, 850, 893, 912
BstMAI GTCTC 3 cut(s) 415, 1097, 1187
BstMBI GATC 7 cut(s) 426, 577, 624, 831, 847, 890, 909
BstSFI CTRYAG 3 cut(s) 582, 739, 858
BstUI CGCG 1 cut(s) 670
BstV1I GCAGC 2 cut(s) 64, 527
BstV2I GAAGAC 1 cut(s) 1036
BstX2I RGATCY 1 cut(s) 890
BstXI CCANNNNNNTGG 1 cut(s) 657
BstYI RGATCY 1 cut(s) 890
Bsu15I ATCGAT 1 cut(s) 834
BsuRI GGCC 3 cut(s) 232, 339, 813
BsuTUI ATCGAT 1 cut(s) 834
BtgZI GCGATG 1 cut(s) 651
BtsCI GGATG 2 cut(s) 103, 180
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 4 cut(s) 204, 508, 900, 1054
BveI ACCTGC 1 cut(s) 851
Cac8I GCNNGC 1 cut(s) 349
CciI TCATGA 1 cut(s) 243
CfoI GCGC 1 cut(s) 955
ClaI ATCGAT 1 cut(s) 834
CseI GACGC 2 cut(s) 1114, 1204
Csp6I GTAC 4 cut(s) 12, 44, 416, 685
CviAII CATG 4 cut(s) 125, 244, 805, 820
CviQI GTAC 4 cut(s) 12, 44, 416, 685
DdeI CTNAG 6 cut(s) 674, 783, 941, 956, 985, 1191
DpnI GATC 7 cut(s) 428, 579, 626, 833, 849, 892, 911
DpnII GATC 7 cut(s) 426, 577, 624, 831, 847, 890, 909
DraI TTTAAA 1 cut(s) 219
EaeI YGGCCR 1 cut(s) 230
Eco130I CCWWGG 2 cut(s) 182, 650
Eco147I AGGCCT 1 cut(s) 813
Eco32I GATATC 1 cut(s) 249
EcoRV GATATC 1 cut(s) 249
EcoT14I CCWWGG 2 cut(s) 182, 650
EcoT22I ATGCAT 1 cut(s) 1186
ErhI CCWWGG 2 cut(s) 182, 650
Esp3I CGTCTC 2 cut(s) 1097, 1187
FaeI CATG 4 cut(s) 128, 247, 808, 823
FaqI GGGAC 2 cut(s) 374, 1245
FatI CATG 4 cut(s) 124, 243, 804, 819
FauNDI CATATG 1 cut(s) 139
FbaI TGATCA 2 cut(s) 426, 909
Fnu4HI GCNGC 3 cut(s) 78, 516, 671
FokI GGATG 2 cut(s) 110, 187
Fsp4HI GCNGC 3 cut(s) 78, 516, 671
FspBI CTAG 4 cut(s) 21, 371, 815, 1083
GlaI GCGC 1 cut(s) 954
GluI GCNGC 3 cut(s) 78, 516, 671
GsaI CCCAGC 1 cut(s) 69
HaeII RGCGCY 1 cut(s) 956
HaeIII GGCC 3 cut(s) 232, 339, 813
HgaI GACGC 2 cut(s) 1114, 1204
HhaI GCGC 1 cut(s) 955
Hin1I GRCGYC 1 cut(s) 1106
Hin1II CATG 4 cut(s) 128, 247, 808, 823
Hin6I GCGC 1 cut(s) 953
HinP1I GCGC 1 cut(s) 953
HindIII AAGCTT 1 cut(s) 165
HinfI GANTC 7 cut(s) 202, 240, 282, 387, 801, 1135, 1141
HphI GGTGA 3 cut(s) 875, 1129, 1144
Hpy188I TCNGA 2 cut(s) 959, 1140
Hpy188III TCNNGA 5 cut(s) 95, 111, 244, 371, 408
Hpy99I CGWCG 1 cut(s) 1165
HpyAV CCTTC 3 cut(s) 496, 803, 1119
HpyCH4III ACNGT 6 cut(s) 11, 268, 503, 904, 1058, 1236
HpyCH4IV ACGT 2 cut(s) 451, 527
HpyCH4V TGCA 7 cut(s) 17, 197, 260, 497, 584, 860, 1184
HpyF3I CTNAG 6 cut(s) 674, 783, 941, 956, 985, 1191
HpySE526I ACGT 2 cut(s) 451, 527
Hsp92I GRCGYC 1 cut(s) 1106
Hsp92II CATG 4 cut(s) 128, 247, 808, 823
HspAI GCGC 1 cut(s) 953
Ksp22I TGATCA 2 cut(s) 426, 909
Kzo9I GATC 7 cut(s) 426, 577, 624, 831, 847, 890, 909
LmnI GCTCC 1 cut(s) 35
Lsp1109I GCAGC 2 cut(s) 64, 527
LweI GCATC 5 cut(s) 26, 165, 334, 774, 979
MaeI CTAG 4 cut(s) 21, 371, 815, 1083
MaeII ACGT 2 cut(s) 451, 527
MaeIII GTNAC 3 cut(s) 5, 49, 1117
MalI GATC 7 cut(s) 428, 579, 626, 833, 849, 892, 911
MboI GATC 7 cut(s) 426, 577, 624, 831, 847, 890, 909
MboII GAAGA 7 cut(s) 368, 781, 992, 1036, 1039, 1042, 1100
MfeI CAATTG 2 cut(s) 255, 1122
MflI RGATCY 1 cut(s) 890
MlsI TGGCCA 1 cut(s) 232
MluCI AATT 7 cut(s) 89, 255, 364, 645, 655, 1091, 1122
MluNI TGGCCA 1 cut(s) 232
MlyI GAGTC 2 cut(s) 396, 810
MnlI CCTC 7 cut(s) 216, 457, 500, 616, 669, 792, 953
Mox20I TGGCCA 1 cut(s) 232
Mph1103I ATGCAT 1 cut(s) 1186
MroXI GAANNNNTTC 1 cut(s) 453
MscI TGGCCA 1 cut(s) 232
MseI TTAA 6 cut(s) 218, 437, 644, 746, 1022, 1031
MslI CAYNNNNRTG 2 cut(s) 634, 902
Msp20I TGGCCA 1 cut(s) 232
MunI CAATTG 2 cut(s) 255, 1122
MvnI CGCG 1 cut(s) 670
NdeI CATATG 1 cut(s) 139
NdeII GATC 7 cut(s) 426, 577, 624, 831, 847, 890, 909
NlaIII CATG 4 cut(s) 128, 247, 808, 823
NlaIV GGNNCC 2 cut(s) 780, 892
NmuCI GTSAC 2 cut(s) 5, 1117
NsiI ATGCAT 1 cut(s) 1186
OliI CACNNNNGTG 1 cut(s) 902
PagI TCATGA 1 cut(s) 243
PaqCI CACCTGC 1 cut(s) 851
PceI AGGCCT 1 cut(s) 813
PdmI GAANNNNTTC 1 cut(s) 453
PfeI GAWTC 5 cut(s) 202, 240, 282, 1135, 1141
Pfl23II CGTACG 1 cut(s) 684
PkrI GCNGC 3 cut(s) 79, 517, 672
PleI GAGTC 2 cut(s) 395, 809
PpsI GAGTC 2 cut(s) 395, 809
Psp1406I AACGTT 1 cut(s) 451
PspFI CCCAGC 1 cut(s) 65
PspLI CGTACG 1 cut(s) 684
PspN4I GGNNCC 2 cut(s) 780, 892
PstI CTGCAG 2 cut(s) 586, 862
PsuI RGATCY 1 cut(s) 890
RsaI GTAC 4 cut(s) 13, 45, 417, 686
RsaNI GTAC 4 cut(s) 12, 44, 416, 685
RseI CAYNNNNRTG 2 cut(s) 634, 902
SaqAI TTAA 6 cut(s) 218, 437, 644, 746, 1022, 1031
SatI GCNGC 3 cut(s) 78, 516, 671
Sau3AI GATC 7 cut(s) 426, 577, 624, 831, 847, 890, 909
SchI GAGTC 2 cut(s) 396, 810
SfaNI GCATC 5 cut(s) 26, 165, 334, 774, 979
SfcI CTRYAG 3 cut(s) 582, 739, 858
SmiMI CAYNNNNRTG 2 cut(s) 634, 902
Sse9I AATT 7 cut(s) 89, 255, 364, 645, 655, 1091, 1122
SseBI AGGCCT 1 cut(s) 813
SsiI CCGC 3 cut(s) 70, 128, 670
SspI AATATT 2 cut(s) 107, 1010
SspMI CTAG 4 cut(s) 21, 371, 815, 1083
StuI AGGCCT 1 cut(s) 813
StyI CCWWGG 2 cut(s) 182, 650
TaaI ACNGT 6 cut(s) 11, 268, 503, 904, 1058, 1236
TaiI ACGT 2 cut(s) 454, 530
TaqI TCGA 3 cut(s) 567, 834, 850
TasI AATT 7 cut(s) 89, 255, 364, 645, 655, 1091, 1122
TauI GCSGC 1 cut(s) 673
TfiI GAWTC 5 cut(s) 202, 240, 282, 1135, 1141
Tru1I TTAA 6 cut(s) 218, 437, 644, 746, 1022, 1031
Tru9I TTAA 6 cut(s) 218, 437, 644, 746, 1022, 1031
TscAI CASTG 4 cut(s) 204, 508, 907, 1061
TseFI GTSAC 2 cut(s) 5, 1117
TseI GCWGC 2 cut(s) 77, 515
Tsp45I GTSAC 2 cut(s) 5, 1117
TspDTI ATGAA 6 cut(s) 114, 159, 232, 462, 992, 1101
TspGWI ACGGA 2 cut(s) 433, 702
TspRI CASTG 4 cut(s) 204, 508, 907, 1061
XapI RAATTY 1 cut(s) 89
XbaI TCTAGA 1 cut(s) 370
XmnI GAANNNNTTC 1 cut(s) 453
XspI CTAG 4 cut(s) 21, 371, 815, 1083
Zsp2I ATGCAT 1 cut(s) 1186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.