Rmu_sc0000288.1_g000003

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000288.1
OG0000950
Physical Location & Seq
Reverse (-)
9249 .. 10565
1317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000288.1_g000003.1.cds

Sequence Viewer

Length: 1317 bp
atggggtatgttttttgtgatcagttattcttgttgcaggggcttcttctgttatggctttctgctaagtatatgagcccgggtacagcatctagggtattctatggagctatggtactaataacattaggcgaagctgggcggttggctgctttgcgagaatttctggatgaacaatattcaagagaacaaaatcatgcggaacgcacatatgatgaaaaccaggataagaaagatgctttgtggatgcttccttggtttataggtgcagtgattcctcttttccttttaaaaacaacttggccacaaatattcatgatatcaacaattgcaatggtggtttcttatttagggttcttgttgggctttccttattatttcacatacaatatgactaatactgaacaaggccaagatgctcgcccagaagaagtcaatcatctagaacaagcaccaagagtccctgaacaaacaaggtcaggaaatgcatggagactggtaaatatattaaggaaagatgaacgttttctcatagaagcattggctatatggttagccttcctccttgcatacagtgttgtaaaggcagcaggaagcacgttttttttccaacaaatggataacttggataaccctttcgataactatgatcctgcagtctatttcaatgtgtttgcctcattttcaaagtacttgatctcatttctctggaacttaattccaaggaaatggaaaccatcgcggctgaggatttggtgcggaatggcttgtattgtgctttgttgtcttgttgcttcgcaagttgagagccacaggttaaacacttcctcaaatacgagcatcttttggttggttcctcagttcttcttactgggagtcatggacggcctagccatgtatggaatgatcgattttcttgttgatcgagtgtctgaagttgataaagtaatggtcgcatattatggatcccacaccactgacttgatcataggtattggaaaaatacttgttggtctcagtgttttggcgttcagaggaagctggtttgatgacaacaacttagatgccagtcatcttgataaatattacagagcattaacaatcttaacttctgttgtcttcttcttccactgttgtatcgccttttactattacactactgaagaattacaagatgagacgccttcatcggtgacagttgagatggtaaataatcagtcacaaccagagctcaacctaccgcggcataatgttgataatgaatttaccaagatgcttgaagagacagttggaggacaatctgatacatatgggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

438

Amino Acids

50.33

Weight (kDa)

4.98

Isoelectric Point (pI)

43.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 616
AccII CGCG 2 cut(s) 742, 1243
AciI CCGC 6 cut(s) 142, 200, 742, 759, 1241, 1243
AclI AACGTT 1 cut(s) 523
AclWI GGATC 3 cut(s) 644, 960, 973
AcoI YGGCCR 1 cut(s) 302
AcsI RAATTY 2 cut(s) 161, 1262
AcuI CTGAAG 2 cut(s) 954, 1182
AcyI GRCGYC 1 cut(s) 1181
AfaI GTAC 3 cut(s) 85, 117, 692
AfiI CCNNNNNNNGG 1 cut(s) 616
AgsI TTSAA 4 cut(s) 183, 667, 687, 1280
AjnI CCWGG 1 cut(s) 222
AjuI GAANNNNNNNTTGG 2 cut(s) 1272, 1304
AluBI AGCT 4 cut(s) 110, 137, 1041, 1231
AluI AGCT 4 cut(s) 110, 137, 1041, 1231
Alw21I GWGCWC 1 cut(s) 1233
Alw26I GTCTC 4 cut(s) 487, 1019, 1172, 1277
AlwI GGATC 3 cut(s) 644, 960, 973
Ama87I CYCGRG 1 cut(s) 79
AoxI GGCC 3 cut(s) 302, 409, 886
ApeKI GCWGC 2 cut(s) 149, 587
ApoI RAATTY 2 cut(s) 161, 1262
Asp700I GAANNNNTTC 1 cut(s) 525
AsuC2I CCSGG 2 cut(s) 80, 81
AsuHPI GGTGA 1 cut(s) 1204
AvaI CYCGRG 1 cut(s) 79
BaeI ACNNNNGTAYC 2 cut(s) 1120, 1153
BalI TGGCCA 1 cut(s) 304
BamHI GGATCC 1 cut(s) 965
BanII GRGCYC 2 cut(s) 80, 1233
BbsI GAAGAC 1 cut(s) 1111
Bbv12I GWGCWC 1 cut(s) 1233
BbvCI CCTCAGC 1 cut(s) 746
BbvI GCAGC 2 cut(s) 136, 599
BccI CCATC 2 cut(s) 745, 1198
BceAI ACGGC 1 cut(s) 901
BciT130I CCWGG 1 cut(s) 224
BclI TGATCA 2 cut(s) 19, 984
BcnI CCSGG 2 cut(s) 80, 81
BcoDI GTCTC 4 cut(s) 487, 1019, 1172, 1277
BfaI CTAG 3 cut(s) 93, 443, 890
BfmI CTRYAG 1 cut(s) 654
BisI GCNGC 4 cut(s) 150, 588, 743, 1244
BlsI GCNGC 4 cut(s) 151, 589, 744, 1245
BmcAI AGTACT 1 cut(s) 692
Bme1390I CCNGG 3 cut(s) 80, 81, 224
BmeT110I CYCGRG 1 cut(s) 79
BmiI GGNNCC 2 cut(s) 855, 967
BmrFI CCNGG 3 cut(s) 80, 81, 224
BmrI ACTGGG 1 cut(s) 881
BmsI GCATC 7 cut(s) 98, 226, 237, 406, 849, 1054, 1263
BmuI ACTGGG 1 cut(s) 881
BpiI GAAGAC 1 cut(s) 1111
Bpu10I CCTNAGC 1 cut(s) 746
BpuMI CCSGG 2 cut(s) 80, 81
Bsa29I ATCGAT 1 cut(s) 909
BsaHI GRCGYC 1 cut(s) 1181
BsaI GGTCTC 1 cut(s) 1019
BsaJI CCNNGG 4 cut(s) 79, 254, 722, 1241
BsaXI ACNNNNNCTCC 2 cut(s) 99, 129
Bsc4I CCNNNNNNNGG 1 cut(s) 616
Bse1I ACTGG 3 cut(s) 501, 876, 1068
Bse3DI GCAATG 1 cut(s) 339
BseBI CCWGG 1 cut(s) 224
BseCI ATCGAT 1 cut(s) 909
BseDI CCNNGG 4 cut(s) 79, 254, 722, 1241
BseGI GGATG 2 cut(s) 175, 252
BseLI CCNNNNNNNGG 1 cut(s) 616
BseMI GCAATG 1 cut(s) 339
BseMII CTCAG 3 cut(s) 737, 872, 1030
BseNI ACTGG 3 cut(s) 501, 876, 1068
BseXI GCAGC 2 cut(s) 136, 599
BseYI CCCAGC 1 cut(s) 137
BsgI GTGCAG 1 cut(s) 288
Bsh1236I CGCG 2 cut(s) 742, 1243
BshFI GGCC 3 cut(s) 304, 411, 888
BshVI ATCGAT 1 cut(s) 909
BsiHKAI GWGCWC 1 cut(s) 1233
BsiHKCI CYCGRG 1 cut(s) 79
BsiSI CCGG 1 cut(s) 80
BslFI GGGAC 1 cut(s) 446
BslI CCNNNNNNNGG 1 cut(s) 616
BsmAI GTCTC 4 cut(s) 487, 1019, 1172, 1277
BsmBI CGTCTC 1 cut(s) 1172
BsmFI GGGAC 1 cut(s) 446
BsnI GGCC 3 cut(s) 304, 411, 888
Bso31I GGTCTC 1 cut(s) 1019
BsoBI CYCGRG 1 cut(s) 79
Bsp1286I GDGCHC 2 cut(s) 80, 1233
Bsp143I GATC 7 cut(s) 19, 649, 696, 906, 922, 965, 984
BspACI CCGC 6 cut(s) 142, 200, 742, 759, 1241, 1243
BspANI GGCC 3 cut(s) 304, 411, 888
BspCNI CTCAG 3 cut(s) 738, 871, 1029
BspDI ATCGAT 1 cut(s) 909
BspFNI CGCG 2 cut(s) 742, 1243
BspHI TCATGA 1 cut(s) 315
BspLI GGNNCC 2 cut(s) 855, 967
BspMAI CTGCAG 1 cut(s) 658
BspPI GGATC 3 cut(s) 644, 960, 973
BspTNI GGTCTC 1 cut(s) 1019
BsrDI GCAATG 1 cut(s) 339
BsrI ACTGG 3 cut(s) 501, 876, 1068
BssECI CCNNGG 4 cut(s) 79, 254, 722, 1241
BssMI GATC 7 cut(s) 19, 649, 696, 906, 922, 965, 984
BssNI GRCGYC 1 cut(s) 1181
BssT1I CCWWGG 2 cut(s) 254, 722
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 4 cut(s) 575, 1133, 1198, 1288
Bst6I CTCTTC 1 cut(s) 1275
BstACI GRCGYC 1 cut(s) 1181
BstC8I GCNNGC 1 cut(s) 421
BstDEI CTNAG 5 cut(s) 66, 746, 858, 1016, 1060
BstDSI CCRYGG 1 cut(s) 1241
BstF5I GGATG 2 cut(s) 175, 252
BstFNI CGCG 2 cut(s) 742, 1243
BstKTI GATC 7 cut(s) 22, 652, 699, 909, 925, 968, 987
BstMAI GTCTC 4 cut(s) 487, 1019, 1172, 1277
BstMBI GATC 7 cut(s) 19, 649, 696, 906, 922, 965, 984
BstNI CCWGG 1 cut(s) 224
BstSCI CCNGG 3 cut(s) 78, 79, 222
BstSFI CTRYAG 1 cut(s) 654
BstUI CGCG 2 cut(s) 742, 1243
BstV1I GCAGC 2 cut(s) 136, 599
BstV2I GAAGAC 1 cut(s) 1111
BstX2I RGATCY 1 cut(s) 965
BstXI CCANNNNNNTGG 1 cut(s) 729
BstYI RGATCY 1 cut(s) 965
Bsu15I ATCGAT 1 cut(s) 909
BsuRI GGCC 3 cut(s) 304, 411, 888
BsuTUI ATCGAT 1 cut(s) 909
BtgI CCRYGG 1 cut(s) 1241
BtgZI GCGATG 1 cut(s) 723
BtsCI GGATG 2 cut(s) 175, 252
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 5 cut(s) 276, 580, 975, 1024, 1129
Cac8I GCNNGC 1 cut(s) 421
CciI TCATGA 1 cut(s) 315
Cfr42I CCGCGG 1 cut(s) 1244
Cfr9I CCCGGG 1 cut(s) 79
ClaI ATCGAT 1 cut(s) 909
CseI GACGC 1 cut(s) 1189
Csp6I GTAC 3 cut(s) 84, 116, 691
CviAII CATG 5 cut(s) 197, 316, 489, 880, 895
CviQI GTAC 3 cut(s) 84, 116, 691
DdeI CTNAG 5 cut(s) 66, 746, 858, 1016, 1060
DpnI GATC 7 cut(s) 21, 651, 698, 908, 924, 967, 986
DpnII GATC 7 cut(s) 19, 649, 696, 906, 922, 965, 984
DraI TTTAAA 1 cut(s) 291
EaeI YGGCCR 1 cut(s) 302
Eam1104I CTCTTC 1 cut(s) 1275
EarI CTCTTC 1 cut(s) 1275
Ecl136II GAGCTC 1 cut(s) 1231
Eco130I CCWWGG 2 cut(s) 254, 722
Eco24I GRGCYC 2 cut(s) 80, 1233
Eco31I GGTCTC 1 cut(s) 1019
Eco32I GATATC 1 cut(s) 321
Eco53kI GAGCTC 1 cut(s) 1231
Eco57I CTGAAG 2 cut(s) 954, 1182
Eco88I CYCGRG 1 cut(s) 79
EcoICRI GAGCTC 1 cut(s) 1231
EcoRII CCWGG 1 cut(s) 222
EcoRV GATATC 1 cut(s) 321
EcoT14I CCWWGG 2 cut(s) 254, 722
EcoT22I ATGCAT 1 cut(s) 490
EcoT38I GRGCYC 2 cut(s) 80, 1233
ErhI CCWWGG 2 cut(s) 254, 722
Esp3I CGTCTC 1 cut(s) 1172
FaeI CATG 5 cut(s) 200, 319, 492, 883, 898
FaqI GGGAC 1 cut(s) 446
FatI CATG 5 cut(s) 196, 315, 488, 879, 894
FauNDI CATATG 2 cut(s) 211, 1309
FbaI TGATCA 2 cut(s) 19, 984
Fnu4HI GCNGC 4 cut(s) 150, 588, 743, 1244
FokI GGATG 2 cut(s) 182, 259
FriOI GRGCYC 2 cut(s) 80, 1233
Fsp4HI GCNGC 4 cut(s) 150, 588, 743, 1244
FspBI CTAG 3 cut(s) 93, 443, 890
GluI GCNGC 4 cut(s) 150, 588, 743, 1244
GsaI CCCAGC 1 cut(s) 141
HaeIII GGCC 3 cut(s) 304, 411, 888
HapII CCGG 1 cut(s) 80
HgaI GACGC 1 cut(s) 1189
Hin1I GRCGYC 1 cut(s) 1181
Hin1II CATG 5 cut(s) 200, 319, 492, 883, 898
HinfI GANTC 3 cut(s) 274, 459, 876
HpaII CCGG 1 cut(s) 80
HphI GGTGA 1 cut(s) 1204
Hpy188I TCNGA 3 cut(s) 934, 1034, 1303
Hpy188III TCNNGA 7 cut(s) 167, 183, 316, 443, 480, 709, 1076
HpyAV CCTTC 2 cut(s) 568, 1194
HpyCH4III ACNGT 4 cut(s) 575, 1133, 1198, 1288
HpyCH4IV ACGT 2 cut(s) 523, 599
HpyCH4V TGCA 6 cut(s) 37, 269, 332, 488, 569, 656
HpyF3I CTNAG 5 cut(s) 66, 746, 858, 1016, 1060
HpySE526I ACGT 2 cut(s) 523, 599
Hsp92I GRCGYC 1 cut(s) 1181
Hsp92II CATG 5 cut(s) 200, 319, 492, 883, 898
Ksp22I TGATCA 2 cut(s) 19, 984
KspI CCGCGG 1 cut(s) 1244
Kzo9I GATC 7 cut(s) 19, 649, 696, 906, 922, 965, 984
LmnI GCTCC 1 cut(s) 107
Lsp1109I GCAGC 2 cut(s) 136, 599
LweI GCATC 7 cut(s) 98, 226, 237, 406, 849, 1054, 1263
MaeI CTAG 3 cut(s) 93, 443, 890
MaeII ACGT 2 cut(s) 523, 599
MaeIII GTNAC 2 cut(s) 1192, 1218
MalI GATC 7 cut(s) 21, 651, 698, 908, 924, 967, 986
MboI GATC 7 cut(s) 19, 649, 696, 906, 922, 965, 984
MboII GAAGA 8 cut(s) 38, 440, 856, 1111, 1114, 1117, 1175, 1292
MfeI CAATTG 1 cut(s) 327
MflI RGATCY 1 cut(s) 965
MhlI GDGCHC 2 cut(s) 80, 1233
MlsI TGGCCA 1 cut(s) 304
MluCI AATT 5 cut(s) 161, 327, 717, 1166, 1262
MluNI TGGCCA 1 cut(s) 304
MlyI GAGTC 2 cut(s) 468, 885
MmeI TCCRAC 2 cut(s) 634, 1270
MnlI CCTC 8 cut(s) 288, 572, 688, 741, 838, 867, 1028, 1286
Mox20I TGGCCA 1 cut(s) 304
Mph1103I ATGCAT 1 cut(s) 490
MroXI GAANNNNTTC 1 cut(s) 525
MscI TGGCCA 1 cut(s) 304
MseI TTAA 6 cut(s) 290, 509, 716, 818, 1097, 1106
Msp20I TGGCCA 1 cut(s) 304
MspA1I CMGCKG 1 cut(s) 1243
MspI CCGG 1 cut(s) 80
MspR9I CCNGG 3 cut(s) 80, 81, 224
MunI CAATTG 1 cut(s) 327
MvaI CCWGG 1 cut(s) 224
MvnI CGCG 2 cut(s) 742, 1243
NciI CCSGG 2 cut(s) 80, 81
NdeI CATATG 2 cut(s) 211, 1309
NdeII GATC 7 cut(s) 19, 649, 696, 906, 922, 965, 984
NlaIII CATG 5 cut(s) 200, 319, 492, 883, 898
NlaIV GGNNCC 2 cut(s) 855, 967
NmuCI GTSAC 2 cut(s) 1192, 1218
NsiI ATGCAT 1 cut(s) 490
PagI TCATGA 1 cut(s) 315
PdmI GAANNNNTTC 1 cut(s) 525
PfeI GAWTC 1 cut(s) 274
PflMI CCANNNNNTGG 1 cut(s) 616
PkrI GCNGC 4 cut(s) 151, 589, 744, 1245
PleI GAGTC 2 cut(s) 467, 884
PpsI GAGTC 2 cut(s) 467, 884
Psp124BI GAGCTC 1 cut(s) 1233
Psp1406I AACGTT 1 cut(s) 523
Psp6I CCWGG 1 cut(s) 222
PspFI CCCAGC 1 cut(s) 137
PspGI CCWGG 1 cut(s) 222
PspN4I GGNNCC 2 cut(s) 855, 967
PstI CTGCAG 1 cut(s) 658
PsuI RGATCY 1 cut(s) 965
RsaI GTAC 3 cut(s) 85, 117, 692
RsaNI GTAC 3 cut(s) 84, 116, 691
SacI GAGCTC 1 cut(s) 1233
SacII CCGCGG 1 cut(s) 1244
SaqAI TTAA 6 cut(s) 290, 509, 716, 818, 1097, 1106
SatI GCNGC 4 cut(s) 150, 588, 743, 1244
Sau3AI GATC 7 cut(s) 19, 649, 696, 906, 922, 965, 984
ScaI AGTACT 1 cut(s) 692
SchI GAGTC 2 cut(s) 468, 885
ScrFI CCNGG 3 cut(s) 80, 81, 224
SduI GDGCHC 2 cut(s) 80, 1233
SfaNI GCATC 7 cut(s) 98, 226, 237, 406, 849, 1054, 1263
SfcI CTRYAG 1 cut(s) 654
Sfr303I CCGCGG 1 cut(s) 1244
SgrBI CCGCGG 1 cut(s) 1244
SmaI CCCGGG 1 cut(s) 81
Sse9I AATT 5 cut(s) 161, 327, 717, 1166, 1262
SsiI CCGC 6 cut(s) 142, 200, 742, 759, 1241, 1243
SspI AATATT 3 cut(s) 179, 312, 1085
SspMI CTAG 3 cut(s) 93, 443, 890
SstI GAGCTC 1 cut(s) 1233
StyD4I CCNGG 3 cut(s) 78, 79, 222
StyI CCWWGG 2 cut(s) 254, 722
TaaI ACNGT 4 cut(s) 575, 1133, 1198, 1288
TaiI ACGT 2 cut(s) 526, 602
TaqI TCGA 3 cut(s) 639, 909, 925
TasI AATT 5 cut(s) 161, 327, 717, 1166, 1262
TatI WGTACW 1 cut(s) 690
TauI GCSGC 2 cut(s) 745, 1246
TfiI GAWTC 1 cut(s) 274
Tru1I TTAA 6 cut(s) 290, 509, 716, 818, 1097, 1106
Tru9I TTAA 6 cut(s) 290, 509, 716, 818, 1097, 1106
TscAI CASTG 5 cut(s) 276, 580, 982, 1024, 1136
TseFI GTSAC 2 cut(s) 1192, 1218
TseI GCWGC 2 cut(s) 149, 587
Tsp45I GTSAC 2 cut(s) 1192, 1218
TspDTI ATGAA 6 cut(s) 186, 231, 304, 534, 1176, 1275
TspMI CCCGGG 1 cut(s) 79
TspRI CASTG 5 cut(s) 276, 580, 982, 1024, 1136
Van91I CCANNNNNTGG 1 cut(s) 616
XapI RAATTY 2 cut(s) 161, 1262
XbaI TCTAGA 1 cut(s) 442
XmaI CCCGGG 1 cut(s) 79
XmnI GAANNNNTTC 1 cut(s) 525
XspI CTAG 3 cut(s) 93, 443, 890
ZrmI AGTACT 1 cut(s) 692
Zsp2I ATGCAT 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.