Rh3CG236400

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000950
Physical Location & Seq
Forward (+)
22471529 .. 22471975
447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG236400.1

Sequence Viewer

Length: 447 bp
ATGGAAGGCCTAGCCATGTATGGAATGATCGATTTTCTTGTTGATCGAGTGTCTGAAGGTGATAAAGTAATGGTCGCATATTATGGATCCCACACCACTGAGTTGATCATAGGTATTGGAAAAATACTTGTTGGTCTTAGTGTTTTGGCGCTCAGAGGAAGCTGGTTTGATGACAACAACTTAGATGCCAGTCATCTTCATAAATATTACAGAGCATTAACAACCTTAACTTCTGTTGTCTTCTTCTTCCACTGTTGTATCGCCTTTTACTATTACACTAGGGAAGAATTACAAGATGAGACGCCTTCATCGGTGACAATTGAGATGGTGAATCAGAATCAGCCACAGATAGACCCGTCGCCACATAACCCTGATAATGCATTTACTGAGACGCTTGATGACAGAGTTGGGTTATCTTATTTATTGGGACAGTTTGTGGGTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

148

Amino Acids

16.71

Weight (kDa)

4.56

Isoelectric Point (pI)

31.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 81, 94
AcuI CTGAAG 1 cut(s) 75
AcyI GRCGYC 1 cut(s) 302
AluBI AGCT 1 cut(s) 162
AluI AGCT 1 cut(s) 162
Alw26I GTCTC 2 cut(s) 293, 383
AlwI GGATC 2 cut(s) 81, 94
AoxI GGCC 1 cut(s) 7
AspLEI GCGC 1 cut(s) 151
AsuHPI GGTGA 3 cut(s) 71, 325, 340
BaeI ACNNNNGTAYC 2 cut(s) 241, 274
BamHI GGATCC 1 cut(s) 86
BbsI GAAGAC 1 cut(s) 232
BccI CCATC 1 cut(s) 319
BclI TGATCA 1 cut(s) 105
BcoDI GTCTC 2 cut(s) 293, 383
BfaI CTAG 2 cut(s) 11, 279
BfoI RGCGCY 1 cut(s) 152
BmiI GGNNCC 1 cut(s) 88
BmsI GCATC 1 cut(s) 175
BpiI GAAGAC 1 cut(s) 232
Bsa29I ATCGAT 1 cut(s) 30
BsaHI GRCGYC 1 cut(s) 302
Bse1I ACTGG 1 cut(s) 189
BseCI ATCGAT 1 cut(s) 30
BseMII CTCAG 3 cut(s) 90, 166, 378
BseNI ACTGG 1 cut(s) 189
BshFI GGCC 1 cut(s) 9
BshVI ATCGAT 1 cut(s) 30
BslFI GGGAC 1 cut(s) 441
BsmAI GTCTC 2 cut(s) 293, 383
BsmBI CGTCTC 2 cut(s) 293, 383
BsmFI GGGAC 1 cut(s) 441
BsnI GGCC 1 cut(s) 9
Bsp143I GATC 4 cut(s) 27, 43, 86, 105
BspANI GGCC 1 cut(s) 9
BspCNI CTCAG 3 cut(s) 91, 165, 379
BspDI ATCGAT 1 cut(s) 30
BspLI GGNNCC 1 cut(s) 88
BspPI GGATC 2 cut(s) 81, 94
BsrI ACTGG 1 cut(s) 189
BssMI GATC 4 cut(s) 27, 43, 86, 105
BssNI GRCGYC 1 cut(s) 302
Bst4CI ACNGT 2 cut(s) 254, 432
BstACI GRCGYC 1 cut(s) 302
BstDEI CTNAG 5 cut(s) 99, 137, 152, 181, 387
BstH2I RGCGCY 1 cut(s) 152
BstHHI GCGC 1 cut(s) 151
BstKTI GATC 4 cut(s) 30, 46, 89, 108
BstMAI GTCTC 2 cut(s) 293, 383
BstMBI GATC 4 cut(s) 27, 43, 86, 105
BstV2I GAAGAC 1 cut(s) 232
BstX2I RGATCY 1 cut(s) 86
BstYI RGATCY 1 cut(s) 86
Bsu15I ATCGAT 1 cut(s) 30
BsuRI GGCC 1 cut(s) 9
BsuTUI ATCGAT 1 cut(s) 30
BtsIMutI CAGTG 2 cut(s) 96, 250
CfoI GCGC 1 cut(s) 151
ClaI ATCGAT 1 cut(s) 30
CseI GACGC 2 cut(s) 310, 400
CviAII CATG 1 cut(s) 16
CviJI RGCY 4 cut(s) 9, 14, 162, 343
CviKI_1 RGCY 4 cut(s) 9, 14, 162, 343
DdeI CTNAG 5 cut(s) 99, 137, 152, 181, 387
DpnI GATC 4 cut(s) 29, 45, 88, 107
DpnII GATC 4 cut(s) 27, 43, 86, 105
Eco147I AGGCCT 1 cut(s) 9
Eco57I CTGAAG 1 cut(s) 75
EcoT22I ATGCAT 1 cut(s) 382
Esp3I CGTCTC 2 cut(s) 293, 383
FaeI CATG 1 cut(s) 19
FaiI YATR 7 cut(s) 17, 21, 79, 84, 110, 201, 366
FaqI GGGAC 1 cut(s) 441
FatI CATG 1 cut(s) 15
FbaI TGATCA 1 cut(s) 105
FspBI CTAG 2 cut(s) 11, 279
GlaI GCGC 1 cut(s) 150
HaeII RGCGCY 1 cut(s) 152
HaeIII GGCC 1 cut(s) 9
HgaI GACGC 2 cut(s) 310, 400
HhaI GCGC 1 cut(s) 151
Hin1I GRCGYC 1 cut(s) 302
Hin1II CATG 1 cut(s) 19
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HinfI GANTC 2 cut(s) 331, 337
HphI GGTGA 3 cut(s) 71, 325, 340
Hpy188I TCNGA 3 cut(s) 55, 155, 336
Hpy99I CGWCG 1 cut(s) 361
HpyAV CCTTC 2 cut(s) 50, 315
HpyCH4III ACNGT 2 cut(s) 254, 432
HpyCH4V TGCA 1 cut(s) 380
HpyF3I CTNAG 5 cut(s) 99, 137, 152, 181, 387
Hsp92I GRCGYC 1 cut(s) 302
Hsp92II CATG 1 cut(s) 19
HspAI GCGC 1 cut(s) 149
Ksp22I TGATCA 1 cut(s) 105
Kzo9I GATC 4 cut(s) 27, 43, 86, 105
LpnPI CCDG 3 cut(s) 148, 202, 384
LweI GCATC 1 cut(s) 175
MaeI CTAG 2 cut(s) 11, 279
MaeIII GTNAC 1 cut(s) 313
MalI GATC 4 cut(s) 29, 45, 88, 107
MboI GATC 4 cut(s) 27, 43, 86, 105
MboII GAAGA 5 cut(s) 188, 232, 235, 238, 296
MfeI CAATTG 1 cut(s) 318
MflI RGATCY 1 cut(s) 86
MluCI AATT 2 cut(s) 287, 318
MnlI CCTC 1 cut(s) 149
Mph1103I ATGCAT 1 cut(s) 382
MseI TTAA 2 cut(s) 218, 227
MunI CAATTG 1 cut(s) 318
NdeII GATC 4 cut(s) 27, 43, 86, 105
NlaIII CATG 1 cut(s) 19
NlaIV GGNNCC 1 cut(s) 88
NmuCI GTSAC 1 cut(s) 313
NsiI ATGCAT 1 cut(s) 382
PceI AGGCCT 1 cut(s) 9
PfeI GAWTC 2 cut(s) 331, 337
PspN4I GGNNCC 1 cut(s) 88
PsuI RGATCY 1 cut(s) 86
SaqAI TTAA 2 cut(s) 218, 227
Sau3AI GATC 4 cut(s) 27, 43, 86, 105
SetI ASST 4 cut(s) 61, 115, 164, 227
SfaNI GCATC 1 cut(s) 175
Sse9I AATT 2 cut(s) 287, 318
SseBI AGGCCT 1 cut(s) 9
SspI AATATT 1 cut(s) 206
SspMI CTAG 2 cut(s) 11, 279
StuI AGGCCT 1 cut(s) 9
TaaI ACNGT 2 cut(s) 254, 432
TaqI TCGA 2 cut(s) 30, 46
TasI AATT 2 cut(s) 287, 318
TfiI GAWTC 2 cut(s) 331, 337
Tru1I TTAA 2 cut(s) 218, 227
Tru9I TTAA 2 cut(s) 218, 227
TscAI CASTG 2 cut(s) 103, 257
TseFI GTSAC 1 cut(s) 313
Tsp45I GTSAC 1 cut(s) 313
TspDTI ATGAA 2 cut(s) 188, 297
TspRI CASTG 2 cut(s) 103, 257
XspI CTAG 2 cut(s) 11, 279
Zsp2I ATGCAT 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.