RchiOBHm_Chr4g0387871

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000950
Physical Location & Seq
Forward (+)
3039503 .. 3040795
1293 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36114

Sequence Viewer

Length: 1293 bp
ATGTTGCAGGGACTAATTATATTCTGGGTGTTCGACGAACCCATACTAGTATGTGGAGCTGCGTTACTTGTAGCATTAGGCGAGGCTGGACGGCCAGCTTCTTTGGGTAGATTTCTTGAGTATCAATATTCACGTGAAACTGACGACTTCAAATCACCCGAAAAACAAAACAATCCTGAAGCCGAGAAAGATCATACTTTGACCAGAAAAGAAGAAGATGATCCTTTTCGAAAAGAAGAAAAAGAAGATGATAAGCGAAAATGTGCTTTGTGGAACCATCCCTGGTTTTTAGGTGCAGCTGTAACTCTTGGCTTTATAAAGAGATCTGATGGAACTCAATTACTGCTTTCGACCATCGCCATGGGAGTTGGTTACTCACTGTTCTGGTATGGCGTCTTCTCATATTCCAGAAATAGTCCAGCTGCAGAAGCAACACATAGAGATCAGGGCCTTTTCCAAGCCATCAAAACACTCTCTCCACCAAAAAAAGGAGGGTGGAGATTGGGTTTCAGCCAAAGATCCGAATCTAGAAAACATTATTACAAAGAAATGTTAGTTATGTGCTTAGCTTTCATCGCATACGGTCTGGTCGAGGCAACGGGGAGCACCTTCTTTTTCACCCAAATTACACTAGTGCTGGATAACGGGGAAATCCCAGCTGTCACTTATTTCGTTATCCTCCAATCCTTGTCAAGCTCGATAATCTCATTTTTCTGGAGTTTACTAGCTCCAAATCGGTCAAAACGTGCTACATTGTTCAGGATCGGCTGCGGATTGGTTTGTTCTGTGCTATGTATGGTTGTTGCTTGGCGAGTTGCGATTCATATGAGTAAACCTGGAAATATTTACTTGAGCCTTGTTTGGTTCATTCCACAATTCTGCCTGTTAGGGTGCATGAGAGGGCTTGCCATAGATGGATTGATCGTGTTTTTTGCGGATCGAGTTGATGGCAATGATAAAAGACAGGCTAGGTATTATGGAACATACGCCAGTGAATTAGTCCTTGGTAGTGGAACACTACTGATTGCCGCGAGTATTTTCGGGTTTAGAGGAATCTTGGATAAAGTTGATCAGTACTACAAGTACTACAGGGCGCTAGCATTCATAGGTGGTGCTAACCTTTGCTATTACTTTTGTGTGGCCTTTTACTTTTATACCAAGGAGGATAACGTACAAAGCTATACATCGAACGAGGACAAGTATCAACAAAATGTGTCCTCAGGTGGCGCGGGTTCTGAGGAGAACATGGAAGCCGTGAAATTGAGCTGTGAATGTTGTAATAATTGTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

430

Amino Acids

48.46

Weight (kDa)

7.42

Isoelectric Point (pI)

42.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 317
AccII CGCG 2 cut(s) 1031, 1229
AciI CCGC 4 cut(s) 771, 935, 1029, 1229
AclWI GGATC 4 cut(s) 215, 513, 770, 945
AcoI YGGCCR 1 cut(s) 92
AcuI CTGAAG 1 cut(s) 198
AcvI CACGTG 1 cut(s) 134
AcyI GRCGYC 1 cut(s) 393
AfaI GTAC 3 cut(s) 1076, 1085, 1173
AfiI CCNNNNNNNGG 1 cut(s) 488
AgsI TTSAA 1 cut(s) 151
AhlI ACTAGT 2 cut(s) 46, 631
AjnI CCWGG 2 cut(s) 281, 835
AjuI GAANNNNNNNTTGG 2 cut(s) 987, 1019
Alw21I GWGCWC 1 cut(s) 608
AlwI GGATC 4 cut(s) 215, 513, 770, 945
AoxI GGCC 3 cut(s) 92, 448, 1140
ApeKI GCWGC 4 cut(s) 59, 296, 422, 768
AspLEI GCGC 2 cut(s) 1096, 1229
AspS9I GGNCC 1 cut(s) 448
AsuHPI GGTGA 2 cut(s) 147, 610
AsuII TTCGAA 1 cut(s) 229
AsuNHI GCTAGC 1 cut(s) 1096
AxyI CCTNAGG 1 cut(s) 1219
BarI GAAGNNNNNNTAC 2 cut(s) 380, 412
BbrPI CACGTG 1 cut(s) 134
BbsI GAAGAC 1 cut(s) 388
Bbv12I GWGCWC 1 cut(s) 608
BbvI GCAGC 4 cut(s) 46, 308, 409, 755
BccI CCATC 6 cut(s) 285, 323, 362, 470, 908, 941
BceAI ACGGC 2 cut(s) 107, 1238
BciT130I CCWGG 2 cut(s) 283, 837
BclI TGATCA 1 cut(s) 1069
BcuI ACTAGT 2 cut(s) 46, 631
BfaI CTAG 6 cut(s) 47, 528, 632, 725, 969, 1097
BfmI CTRYAG 2 cut(s) 423, 1087
BfoI RGCGCY 1 cut(s) 1097
BglII AGATCT 1 cut(s) 323
BisI GCNGC 5 cut(s) 60, 297, 423, 769, 1029
BlpI GCTNAGC 1 cut(s) 565
BlsI GCNGC 5 cut(s) 61, 298, 424, 770, 1030
BmcAI AGTACT 2 cut(s) 1076, 1085
Bme1390I CCNGG 2 cut(s) 283, 837
BmgT120I GGNCC 1 cut(s) 448
BmiI GGNNCC 1 cut(s) 275
BmrFI CCNGG 2 cut(s) 283, 837
BmtI GCTAGC 1 cut(s) 1100
BpiI GAAGAC 1 cut(s) 388
BpmI CTGGAG 1 cut(s) 736
Bpu1102I GCTNAGC 1 cut(s) 565
Bpu14I TTCGAA 1 cut(s) 229
BpuEI CTTGAG 2 cut(s) 137, 871
BsaAI YACGTR 1 cut(s) 134
BsaBI GATNNNNATC 1 cut(s) 523
BsaHI GRCGYC 1 cut(s) 393
BsaJI CCNNGG 4 cut(s) 281, 360, 1003, 1158
BsaXI ACNNNNNCTCC 4 cut(s) 460, 490, 490, 520
Bsc4I CCNNNNNNNGG 1 cut(s) 488
Bse1I ACTGG 1 cut(s) 990
Bse21I CCTNAGG 1 cut(s) 1219
Bse3DI GCAATG 1 cut(s) 958
Bse8I GATNNNNATC 1 cut(s) 523
BseBI CCWGG 2 cut(s) 283, 837
BseDI CCNNGG 4 cut(s) 281, 360, 1003, 1158
BseGI GGATG 1 cut(s) 277
BseJI GATNNNNATC 1 cut(s) 523
BseLI CCNNNNNNNGG 1 cut(s) 488
BseMI GCAATG 1 cut(s) 958
BseMII CTCAG 2 cut(s) 1227, 1233
BseNI ACTGG 1 cut(s) 990
BseRI GAGGAG 1 cut(s) 1253
BseXI GCAGC 4 cut(s) 46, 308, 409, 755
BseYI CCCAGC 1 cut(s) 655
BsgI GTGCAG 1 cut(s) 315
Bsh1236I CGCG 2 cut(s) 1031, 1229
BshFI GGCC 3 cut(s) 94, 450, 1142
BsiHKAI GWGCWC 1 cut(s) 608
BslFI GGGAC 1 cut(s) 24
BslI CCNNNNNNNGG 1 cut(s) 488
BsmFI GGGAC 1 cut(s) 24
BsmI GAATGC 1 cut(s) 1100
BsnI GGCC 3 cut(s) 94, 450, 1142
Bsp119I TTCGAA 1 cut(s) 229
Bsp1286I GDGCHC 1 cut(s) 608
Bsp143I GATC 9 cut(s) 190, 220, 323, 442, 518, 762, 921, 937, 1069
Bsp1720I GCTNAGC 1 cut(s) 565
Bsp19I CCATGG 1 cut(s) 360
BspACI CCGC 4 cut(s) 771, 935, 1029, 1229
BspANI GGCC 3 cut(s) 94, 450, 1142
BspCNI CTCAG 2 cut(s) 1228, 1232
BspFNI CGCG 2 cut(s) 1031, 1229
BspLI GGNNCC 1 cut(s) 275
BspMAI CTGCAG 1 cut(s) 427
BspOI GCTAGC 1 cut(s) 1100
BspPI GGATC 4 cut(s) 215, 513, 770, 945
BspT104I TTCGAA 1 cut(s) 229
BsrDI GCAATG 1 cut(s) 958
BsrI ACTGG 1 cut(s) 990
BssECI CCNNGG 4 cut(s) 281, 360, 1003, 1158
BssMI GATC 9 cut(s) 190, 220, 323, 442, 518, 762, 921, 937, 1069
BssNI GRCGYC 1 cut(s) 393
BssT1I CCWWGG 3 cut(s) 360, 1003, 1158
Bst2UI CCWGG 2 cut(s) 283, 837
Bst4CI ACNGT 2 cut(s) 381, 584
BstACI GRCGYC 1 cut(s) 393
BstBAI YACGTR 1 cut(s) 134
BstBI TTCGAA 1 cut(s) 229
BstC8I GCNNGC 3 cut(s) 96, 906, 1098
BstDEI CTNAG 3 cut(s) 565, 1219, 1236
BstDSI CCRYGG 1 cut(s) 360
BstF5I GGATG 1 cut(s) 277
BstFNI CGCG 2 cut(s) 1031, 1229
BstH2I RGCGCY 1 cut(s) 1097
BstHHI GCGC 2 cut(s) 1096, 1229
BstKTI GATC 9 cut(s) 193, 223, 326, 445, 521, 765, 924, 940, 1072
BstMBI GATC 9 cut(s) 190, 220, 323, 442, 518, 762, 921, 937, 1069
BstMWI GCNNNNNNNGC 2 cut(s) 428, 575
BstNI CCWGG 2 cut(s) 283, 837
BstSCI CCNGG 2 cut(s) 281, 835
BstSFI CTRYAG 2 cut(s) 423, 1087
BstUI CGCG 2 cut(s) 1031, 1229
BstV1I GCAGC 4 cut(s) 46, 308, 409, 755
BstV2I GAAGAC 1 cut(s) 388
BstX2I RGATCY 2 cut(s) 323, 518
BstXI CCANNNNNNTGG 1 cut(s) 361
BstYI RGATCY 2 cut(s) 323, 518
Bsu36I CCTNAGG 1 cut(s) 1219
BsuRI GGCC 3 cut(s) 94, 450, 1142
BtgI CCRYGG 1 cut(s) 360
BtgZI GCGATG 2 cut(s) 340, 559
BtsCI GGATG 1 cut(s) 277
BtsIMutI CAGTG 2 cut(s) 377, 997
Cac8I GCNNGC 3 cut(s) 96, 906, 1098
CfoI GCGC 2 cut(s) 1096, 1229
Cfr13I GGNCC 1 cut(s) 448
CseI GACGC 1 cut(s) 382
Csp6I GTAC 3 cut(s) 1075, 1084, 1172
CviAII CATG 3 cut(s) 361, 895, 1246
CviQI GTAC 3 cut(s) 1075, 1084, 1172
DdeI CTNAG 3 cut(s) 565, 1219, 1236
DpnI GATC 9 cut(s) 192, 222, 325, 444, 520, 764, 923, 939, 1071
DpnII GATC 9 cut(s) 190, 220, 323, 442, 518, 762, 921, 937, 1069
EaeI YGGCCR 1 cut(s) 92
Eco130I CCWWGG 3 cut(s) 360, 1003, 1158
Eco57I CTGAAG 1 cut(s) 198
Eco72I CACGTG 1 cut(s) 134
Eco81I CCTNAGG 1 cut(s) 1219
EcoO109I RGGNCCY 1 cut(s) 448
EcoRII CCWGG 2 cut(s) 281, 835
EcoT14I CCWWGG 3 cut(s) 360, 1003, 1158
ErhI CCWWGG 3 cut(s) 360, 1003, 1158
FaeI CATG 3 cut(s) 364, 898, 1249
FaqI GGGAC 1 cut(s) 24
FatI CATG 3 cut(s) 360, 894, 1245
FauI CCCGC 1 cut(s) 1222
FauNDI CATATG 1 cut(s) 825
FbaI TGATCA 1 cut(s) 1069
Fnu4HI GCNGC 5 cut(s) 60, 297, 423, 769, 1029
FokI GGATG 1 cut(s) 264
Fsp4HI GCNGC 5 cut(s) 60, 297, 423, 769, 1029
FspBI CTAG 6 cut(s) 47, 528, 632, 725, 969, 1097
GlaI GCGC 2 cut(s) 1095, 1228
GluI GCNGC 5 cut(s) 60, 297, 423, 769, 1029
GsaI CCCAGC 1 cut(s) 659
GsuI CTGGAG 1 cut(s) 736
HaeII RGCGCY 1 cut(s) 1097
HaeIII GGCC 3 cut(s) 94, 450, 1142
HgaI GACGC 1 cut(s) 382
HhaI GCGC 2 cut(s) 1096, 1229
Hin1I GRCGYC 1 cut(s) 393
Hin1II CATG 3 cut(s) 364, 898, 1249
Hin6I GCGC 2 cut(s) 1094, 1227
HinP1I GCGC 2 cut(s) 1094, 1227
HinfI GANTC 3 cut(s) 524, 820, 1053
HphI GGTGA 2 cut(s) 147, 610
Hpy166II GTNNAC 2 cut(s) 722, 833
Hpy188I TCNGA 3 cut(s) 328, 523, 1237
Hpy188III TCNNGA 6 cut(s) 116, 176, 408, 528, 715, 760
Hpy8I GTNNAC 2 cut(s) 722, 833
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 1 cut(s) 619
HpyCH4III ACNGT 2 cut(s) 381, 584
HpyCH4IV ACGT 3 cut(s) 133, 745, 1170
HpyCH4V TGCA 4 cut(s) 7, 296, 425, 894
HpyF10VI GCNNNNNNNGC 2 cut(s) 428, 575
HpyF3I CTNAG 3 cut(s) 565, 1219, 1236
HpySE526I ACGT 3 cut(s) 133, 745, 1170
Hsp92I GRCGYC 1 cut(s) 393
Hsp92II CATG 3 cut(s) 364, 898, 1249
HspAI GCGC 2 cut(s) 1094, 1227
Ksp22I TGATCA 1 cut(s) 1069
Kzo9I GATC 9 cut(s) 190, 220, 323, 442, 518, 762, 921, 937, 1069
LmnI GCTCC 3 cut(s) 56, 603, 733
Lsp1109I GCAGC 4 cut(s) 46, 308, 409, 755
MaeI CTAG 6 cut(s) 47, 528, 632, 725, 969, 1097
MaeII ACGT 3 cut(s) 133, 745, 1170
MaeIII GTNAC 4 cut(s) 63, 301, 371, 661
MalI GATC 9 cut(s) 192, 222, 325, 444, 520, 764, 923, 939, 1071
MboI GATC 9 cut(s) 190, 220, 323, 442, 518, 762, 921, 937, 1069
MboII GAAGA 5 cut(s) 224, 227, 248, 257, 388
MflI RGATCY 2 cut(s) 323, 518
MhlI GDGCHC 1 cut(s) 608
MluCI AATT 7 cut(s) 15, 338, 624, 875, 995, 1259, 1282
MslI CAYNNNNRTG 1 cut(s) 359
MspA1I CMGCKG 3 cut(s) 299, 422, 659
MspR9I CCNGG 2 cut(s) 283, 837
Mva1269I GAATGC 1 cut(s) 1100
MvaI CCWGG 2 cut(s) 283, 837
MvnI CGCG 2 cut(s) 1031, 1229
MwoI GCNNNNNNNGC 2 cut(s) 428, 575
NcoI CCATGG 1 cut(s) 360
NdeI CATATG 1 cut(s) 825
NdeII GATC 9 cut(s) 190, 220, 323, 442, 518, 762, 921, 937, 1069
NheI GCTAGC 1 cut(s) 1096
NlaIII CATG 3 cut(s) 364, 898, 1249
NlaIV GGNNCC 1 cut(s) 275
NmeAIII GCCGAG 1 cut(s) 208
NmuCI GTSAC 1 cut(s) 661
NspV TTCGAA 1 cut(s) 229
PcsI WCGNNNNNNNCGW 2 cut(s) 588, 742
PctI GAATGC 1 cut(s) 1100
PfeI GAWTC 3 cut(s) 524, 820, 1053
PkrI GCNGC 5 cut(s) 61, 298, 424, 770, 1030
PmaCI CACGTG 1 cut(s) 134
PmlI CACGTG 1 cut(s) 134
Ppu21I YACGTR 1 cut(s) 134
PsiI TTATAA 1 cut(s) 317
Psp6I CCWGG 2 cut(s) 281, 835
PspCI CACGTG 1 cut(s) 134
PspFI CCCAGC 1 cut(s) 655
PspGI CCWGG 2 cut(s) 281, 835
PspN4I GGNNCC 1 cut(s) 275
PspPI GGNCC 1 cut(s) 448
PstI CTGCAG 1 cut(s) 427
PsuI RGATCY 2 cut(s) 323, 518
PvuII CAGCTG 3 cut(s) 299, 422, 659
RsaI GTAC 3 cut(s) 1076, 1085, 1173
RsaNI GTAC 3 cut(s) 1075, 1084, 1172
RseI CAYNNNNRTG 1 cut(s) 359
SatI GCNGC 5 cut(s) 60, 297, 423, 769, 1029
Sau3AI GATC 9 cut(s) 190, 220, 323, 442, 518, 762, 921, 937, 1069
Sau96I GGNCC 1 cut(s) 448
ScaI AGTACT 2 cut(s) 1076, 1085
ScrFI CCNGG 2 cut(s) 283, 837
SduI GDGCHC 1 cut(s) 608
SfcI CTRYAG 2 cut(s) 423, 1087
SfuI TTCGAA 1 cut(s) 229
SmiMI CAYNNNNRTG 1 cut(s) 359
SmlI CTYRAG 2 cut(s) 116, 850
SmoI CTYRAG 2 cut(s) 116, 850
SpeI ACTAGT 2 cut(s) 46, 631
Sse9I AATT 7 cut(s) 15, 338, 624, 875, 995, 1259, 1282
SsiI CCGC 4 cut(s) 771, 935, 1029, 1229
SspI AATATT 2 cut(s) 128, 844
SspMI CTAG 6 cut(s) 47, 528, 632, 725, 969, 1097
StyD4I CCNGG 2 cut(s) 281, 835
StyI CCWWGG 3 cut(s) 360, 1003, 1158
TaaI ACNGT 2 cut(s) 381, 584
TaiI ACGT 3 cut(s) 136, 748, 1173
TaqI TCGA 7 cut(s) 33, 229, 350, 591, 698, 940, 1187
TaqII GACCGA 1 cut(s) 726
TasI AATT 7 cut(s) 15, 338, 624, 875, 995, 1259, 1282
TatI WGTACW 2 cut(s) 1074, 1083
TauI GCSGC 1 cut(s) 1031
TfiI GAWTC 3 cut(s) 524, 820, 1053
TscAI CASTG 2 cut(s) 384, 997
TseFI GTSAC 1 cut(s) 661
TseI GCWGC 4 cut(s) 59, 296, 422, 768
Tsp45I GTSAC 1 cut(s) 661
TspDTI ATGAA 4 cut(s) 562, 812, 856, 1093
TspRI CASTG 2 cut(s) 384, 997
XbaI TCTAGA 1 cut(s) 527
XspI CTAG 6 cut(s) 47, 528, 632, 725, 969, 1097
ZrmI AGTACT 2 cut(s) 1076, 1085
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.