RLG00000007575

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000950
Physical Location & Seq
Forward (+)
18422389 .. 18425327
2939 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007575

Sequence Viewer

Length: 1680 bp
ATGAGAAGGTGGATTGGAAACTACCTCTACTTTTCCAAGGCCACTTTATGCATCCGGGGTTTGGTCTTGAGCCATAGCTTCGTAAACCATGTGGTAATTTCTGTATTGATAACGTACCTCATATTTGAAATTTGGAAGCCATCAAATGATAATTATCAGCTGGCTGCTGTAGCTATAAATGTGCTAGATGGGGTATCATCCATCATGGTGTGTGTCCTTGCTTTCATATCAAACAGGGTCGGTCCTTTTAAGGTGATTGCCTCCACGAATGGTGCCTATTTTCTTGGTCTGGTTCTATTGTGGAGTTCATCTAATTACGCGGGCCCGAAAGCCAATGCATCTGATAAAGTATTCTACGGAGCTGGCCTACTGTTAGCATTAGGCGAGGCTGGACGGTCGGCTGCTTTGGGTAAATTTCTCGAGGACCAATATTTAAGTGAAGCTGATCACAAGATCAAATTACCCGAAACAAATAGTATTGAAGAAGAAGCTCATATTTCGACCAGAAAAGAAGAAGATGACAAGCAAAAACGTGGGGAAACCCGTCAAACCGCTTTATGGAGCCATCCCTGGTTCATAGGTGCGACTGCACCTCTTGCCCTTGTAAATAGATCTTGGCAAACTCAACTACGGCTCTCAATGATCGCGGTGGGAGCTTCTTACTTATTGTTCTGGTATGGCGTCTTCGCGTATTCCAGAAATATCAGAAATGAATCAAATGCTTCAGGAGTAGAAGATGCACCAAGAGATTCTGGACTTTGCCAAGCCATCAAAAGTCTCTCACCACCAGAAAAACCATCAAGCTTGCAGTTTTGGCTCAAACCAAATTCCAGAATACGTTATTACGAAGAAATGCTAGTCATGTGCTTAGCCTTCATCGTATATAGTCTGGTGGAGGCAACGGGGAGCACCTTCTTTTTCGATCAAATGAGTCTACTGAACTATCACGTCGGGAACTTTAAATTGCCCATCATATATTTCGTTATACTCCAATCCTTGTCAAGCTCCGTAATCTCATTTCTCTGGAGGTTACTAGTTCCAAATCAGTCAAAACGTGCTACGTTGGTGAGGATCGGCTGTGGTTTAGTTTGCTCTGTGCTATGTATGGTTGCTGCTTGGCAAGTTGAGATTCGTAGGAAAATTAAGATCAATACAGAATATACAGGTGACCCCGACCGGAAGGAGATTTCCATGAGCATTCTTTGGTTAATTCCACAATTCTCCCTGTTAGGGTTTATGAGAGGGTTAGCGGCAGATGGATTGATCGAGTTTTTTGCGGATCGAGTTGATGGTAATGGTAAAAGAAAGGCTAGGTATTATGGATCCTACGCCAGTGAATTAGTCCTGGGTACTGGAACACTACTAACCGCCGTTAGTATTCTCGGGTTTAGACGAACTTGGTTGGTTGATGATATATACAAGAATCGTCTGGATAAGTACTACAGGGGACTAGTATTCATAGGTGTTGCTAACCTTTGCTATTACTTCTGTGTCGCCGTTTACTTTTATACCAAGGAGGATAACTCGCAAGTAAGTAGTGCCGCAGATGGAAATGTTCAAAGTGAAACGCCGGAAGGCGACAAAAAATATTATCATCACGAGGTGTCCTCAGGTGGTGCGGAGACTCCGGACTGGGAAGAAATGAAGTATAGTTTTGATTGTTGTAGTAGTTTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

560

Amino Acids

62.94

Weight (kDa)

8.32

Isoelectric Point (pI)

38.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 284 - 427 6.4e-08 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 272
AccI GTMKAC 1 cut(s) 934
AccII CGCG 3 cut(s) 320, 647, 689
AccIII TCCGGA 1 cut(s) 1627
AciI CCGC 8 cut(s) 320, 552, 647, 1250, 1277, 1368, 1542, 1619
AclWI GGATC 4 cut(s) 1079, 1287, 1317, 1330
AcsI RAATTY 3 cut(s) 129, 413, 826
AcuI CTGAAG 1 cut(s) 708
AcyI GRCGYC 1 cut(s) 681
AdeI CACNNNGTG 1 cut(s) 1603
AfaI GTAC 3 cut(s) 116, 1351, 1439
AfiI CCNNNNNNNGG 3 cut(s) 61, 558, 1230
AgsI TTSAA 3 cut(s) 128, 482, 1559
AhlI ACTAGT 2 cut(s) 1033, 1450
AjiI CACGTC 1 cut(s) 949
AjnI CCWGG 2 cut(s) 569, 1344
AluBI AGCT 9 cut(s) 78, 160, 173, 362, 443, 491, 656, 804, 1005
AluI AGCT 9 cut(s) 78, 160, 173, 362, 443, 491, 656, 804, 1005
Alw21I GWGCWC 1 cut(s) 911
Alw26I GTCTC 2 cut(s) 782, 1616
AlwI GGATC 4 cut(s) 1079, 1287, 1317, 1330
Ama87I CYCGRG 2 cut(s) 419, 1382
Aor13HI TCCGGA 1 cut(s) 1627
AoxI GGCC 3 cut(s) 39, 322, 364
ApaI GGGCCC 1 cut(s) 326
ApeKI GCWGC 3 cut(s) 164, 401, 1112
ApoI RAATTY 3 cut(s) 129, 413, 826
AspS9I GGNCC 4 cut(s) 242, 322, 323, 424
AsuC2I CCSGG 1 cut(s) 56
AsuHPI GGTGA 4 cut(s) 265, 774, 1078, 1178
AvaI CYCGRG 2 cut(s) 419, 1382
AvaII GGWCC 2 cut(s) 242, 424
AxyI CCTNAGG 1 cut(s) 1609
BaeGI GKGCMC 1 cut(s) 326
BamHI GGATCC 1 cut(s) 1322
BanI GGYRCC 1 cut(s) 272
BanII GRGCYC 1 cut(s) 326
BarI GAAGNNNNNNTAC 2 cut(s) 668, 700
BauI CACGAG 1 cut(s) 1598
BbsI GAAGAC 1 cut(s) 676
Bbv12I GWGCWC 1 cut(s) 911
BbvI GCAGC 3 cut(s) 151, 388, 1099
BceAI ACGGC 3 cut(s) 647, 1355, 1481
BcgI CGANNNNNNTGC 2 cut(s) 1256, 1290
BciT130I CCWGG 2 cut(s) 571, 1346
BclI TGATCA 1 cut(s) 445
BcnI CCSGG 1 cut(s) 56
BcoDI GTCTC 2 cut(s) 782, 1616
BcuI ACTAGT 2 cut(s) 1033, 1450
BfaI CTAG 5 cut(s) 185, 857, 1034, 1311, 1451
BfmI CTRYAG 2 cut(s) 168, 1441
BglII AGATCT 1 cut(s) 611
BisI GCNGC 5 cut(s) 165, 402, 1113, 1251, 1542
BlpI GCTNAGC 1 cut(s) 868
BlsI GCNGC 5 cut(s) 166, 403, 1114, 1252, 1543
BmcAI AGTACT 1 cut(s) 1439
Bme1390I CCNGG 3 cut(s) 56, 571, 1346
Bme18I GGWCC 2 cut(s) 242, 424
BmeT110I CYCGRG 2 cut(s) 419, 1382
BmgBI CACGTC 1 cut(s) 949
BmgT120I GGNCC 4 cut(s) 242, 322, 323, 424
BmiI GGNNCC 4 cut(s) 274, 324, 563, 1324
BmrFI CCNGG 3 cut(s) 56, 571, 1346
BmrI ACTGGG 1 cut(s) 1642
BmsI GCATC 3 cut(s) 60, 347, 727
BmuI ACTGGG 1 cut(s) 1642
BpiI GAAGAC 1 cut(s) 676
BplI GAGNNNNNCTC 4 cut(s) 1508, 1540, 1592, 1624
BpmI CTGGAG 1 cut(s) 1045
Bpu1102I GCTNAGC 1 cut(s) 868
BpuEI CTTGAG 1 cut(s) 88
BpuMI CCSGG 1 cut(s) 56
BsaBI GATNNNNATC 1 cut(s) 153
BsaHI GRCGYC 1 cut(s) 681
BsaJI CCNNGG 5 cut(s) 36, 55, 569, 1345, 1512
BsaWI WCCGGW 2 cut(s) 1176, 1627
Bsc4I CCNNNNNNNGG 3 cut(s) 61, 558, 1230
Bse1I ACTGG 3 cut(s) 1332, 1357, 1637
Bse21I CCTNAGG 1 cut(s) 1609
Bse8I GATNNNNATC 1 cut(s) 153
BseAI TCCGGA 1 cut(s) 1627
BseBI CCWGG 2 cut(s) 571, 1346
BseDI CCNNGG 5 cut(s) 36, 55, 569, 1345, 1512
BseGI GGATG 3 cut(s) 51, 197, 565
BseJI GATNNNNATC 1 cut(s) 153
BseLI CCNNNNNNNGG 3 cut(s) 61, 558, 1230
BseMII CTCAG 1 cut(s) 1623
BseNI ACTGG 3 cut(s) 1332, 1357, 1637
BseSI GKGCMC 1 cut(s) 326
BseXI GCAGC 3 cut(s) 151, 388, 1099
BsgI GTGCAG 1 cut(s) 573
Bsh1236I CGCG 3 cut(s) 320, 647, 689
Bsh1285I CGRYCG 2 cut(s) 398, 1177
BshFI GGCC 3 cut(s) 41, 324, 366
BshNI GGYRCC 1 cut(s) 272
BsiEI CGRYCG 2 cut(s) 398, 1177
BsiHKAI GWGCWC 1 cut(s) 911
BsiHKCI CYCGRG 2 cut(s) 419, 1382
BsiSI CCGG 4 cut(s) 55, 1177, 1571, 1628
BslFI GGGAC 1 cut(s) 1461
BslI CCNNNNNNNGG 3 cut(s) 61, 558, 1230
BsmAI GTCTC 2 cut(s) 782, 1616
BsmFI GGGAC 1 cut(s) 1461
BsmI GAATGC 1 cut(s) 1197
BsnI GGCC 3 cut(s) 41, 324, 366
BsoBI CYCGRG 2 cut(s) 419, 1382
Bsp120I GGGCCC 1 cut(s) 322
Bsp1286I GDGCHC 2 cut(s) 326, 911
Bsp13I TCCGGA 1 cut(s) 1627
Bsp1720I GCTNAGC 1 cut(s) 868
BspACI CCGC 8 cut(s) 320, 552, 647, 1250, 1277, 1368, 1542, 1619
BspANI GGCC 3 cut(s) 41, 324, 366
BspCNI CTCAG 1 cut(s) 1622
BspEI TCCGGA 1 cut(s) 1627
BspFNI CGCG 3 cut(s) 320, 647, 689
BspLI GGNNCC 4 cut(s) 274, 324, 563, 1324
BspPI GGATC 4 cut(s) 1079, 1287, 1317, 1330
BspT107I GGYRCC 1 cut(s) 272
BsrI ACTGG 3 cut(s) 1332, 1357, 1637
BssECI CCNNGG 5 cut(s) 36, 55, 569, 1345, 1512
BssNI GRCGYC 1 cut(s) 681
BssSI CACGAG 1 cut(s) 1598
BssT1I CCWWGG 2 cut(s) 36, 1512
Bst2BI CACGAG 1 cut(s) 1598
Bst2UI CCWGG 2 cut(s) 571, 1346
Bst4CI ACNGT 2 cut(s) 372, 396
BstACI GRCGYC 1 cut(s) 681
BstAPI GCANNNNNTGC 1 cut(s) 596
BstC8I GCNNGC 4 cut(s) 162, 322, 364, 806
BstDEI CTNAG 2 cut(s) 868, 1609
BstEII GGTNACC 1 cut(s) 1166
BstF5I GGATG 3 cut(s) 51, 197, 565
BstFNI CGCG 3 cut(s) 320, 647, 689
BstMAI GTCTC 2 cut(s) 782, 1616
BstMCI CGRYCG 2 cut(s) 398, 1177
BstMWI GCNNNNNNNGC 4 cut(s) 170, 596, 653, 814
BstNI CCWGG 2 cut(s) 571, 1346
BstPI GGTNACC 1 cut(s) 1166
BstSCI CCNGG 3 cut(s) 54, 569, 1344
BstSFI CTRYAG 2 cut(s) 168, 1441
BstSLI GKGCMC 1 cut(s) 326
BstUI CGCG 3 cut(s) 320, 647, 689
BstV1I GCAGC 3 cut(s) 151, 388, 1099
BstV2I GAAGAC 1 cut(s) 676
BstX2I RGATCY 2 cut(s) 611, 1322
BstYI RGATCY 2 cut(s) 611, 1322
Bsu36I CCTNAGG 1 cut(s) 1609
BsuRI GGCC 3 cut(s) 41, 324, 366
BtrI CACGTC 1 cut(s) 949
BtsCI GGATG 3 cut(s) 51, 197, 565
BtsIMutI CAGTG 1 cut(s) 1339
Cac8I GCNNGC 4 cut(s) 162, 322, 364, 806
Cfr13I GGNCC 4 cut(s) 242, 322, 323, 424
CseI GACGC 1 cut(s) 670
Csp6I GTAC 3 cut(s) 115, 1350, 1438
CviAII CATG 4 cut(s) 89, 205, 862, 1192
CviQI GTAC 3 cut(s) 115, 1350, 1438
DdeI CTNAG 2 cut(s) 868, 1609
DraI TTTAAA 1 cut(s) 961
DraIII CACNNNGTG 1 cut(s) 1603
Eco130I CCWWGG 2 cut(s) 36, 1512
Eco24I GRGCYC 1 cut(s) 326
Eco47I GGWCC 2 cut(s) 242, 424
Eco57I CTGAAG 1 cut(s) 708
Eco81I CCTNAGG 1 cut(s) 1609
Eco88I CYCGRG 2 cut(s) 419, 1382
Eco91I GGTNACC 1 cut(s) 1166
EcoO65I GGTNACC 1 cut(s) 1166
EcoRII CCWGG 2 cut(s) 569, 1344
EcoT14I CCWWGG 2 cut(s) 36, 1512
EcoT22I ATGCAT 2 cut(s) 53, 340
EcoT38I GRGCYC 1 cut(s) 326
ErhI CCWWGG 2 cut(s) 36, 1512
FaeI CATG 4 cut(s) 92, 208, 865, 1195
FaqI GGGAC 1 cut(s) 1461
FatI CATG 4 cut(s) 88, 204, 861, 1191
FauI CCCGC 1 cut(s) 313
FbaI TGATCA 1 cut(s) 445
FblI GTMKAC 1 cut(s) 934
Fnu4HI GCNGC 5 cut(s) 165, 402, 1113, 1251, 1542
FokI GGATG 3 cut(s) 38, 184, 552
FriOI GRGCYC 1 cut(s) 326
Fsp4HI GCNGC 5 cut(s) 165, 402, 1113, 1251, 1542
FspBI CTAG 5 cut(s) 185, 857, 1034, 1311, 1451
GluI GCNGC 5 cut(s) 165, 402, 1113, 1251, 1542
GsuI CTGGAG 1 cut(s) 1045
HaeIII GGCC 3 cut(s) 41, 324, 366
HapII CCGG 4 cut(s) 55, 1177, 1571, 1628
HgaI GACGC 1 cut(s) 670
Hin1I GRCGYC 1 cut(s) 681
Hin1II CATG 4 cut(s) 92, 208, 865, 1195
HindIII AAGCTT 1 cut(s) 802
HinfI GANTC 6 cut(s) 713, 749, 931, 1129, 1423, 1624
HpaII CCGG 4 cut(s) 55, 1177, 1571, 1628
HphI GGTGA 4 cut(s) 265, 774, 1078, 1178
Hpy166II GTNNAC 3 cut(s) 85, 935, 1501
Hpy188I TCNGA 2 cut(s) 343, 707
Hpy8I GTNNAC 3 cut(s) 85, 935, 1501
Hpy99I CGWCG 1 cut(s) 953
HpyAV CCTTC 4 cut(s) 883, 922, 1174, 1568
HpyCH4III ACNGT 2 cut(s) 372, 396
HpyCH4IV ACGT 6 cut(s) 113, 532, 838, 948, 1054, 1061
HpyCH4V TGCA 5 cut(s) 51, 338, 590, 740, 808
HpyF10VI GCNNNNNNNGC 4 cut(s) 170, 596, 653, 814
HpyF3I CTNAG 2 cut(s) 868, 1609
HpySE526I ACGT 6 cut(s) 113, 532, 838, 948, 1054, 1061
Hsp92I GRCGYC 1 cut(s) 681
Hsp92II CATG 4 cut(s) 92, 208, 865, 1195
Kpn2I TCCGGA 1 cut(s) 1627
Ksp22I TGATCA 1 cut(s) 445
LmnI GCTCC 5 cut(s) 359, 561, 653, 906, 1010
Lsp1109I GCAGC 3 cut(s) 151, 388, 1099
LweI GCATC 3 cut(s) 60, 347, 727
MaeI CTAG 5 cut(s) 185, 857, 1034, 1311, 1451
MaeII ACGT 6 cut(s) 113, 532, 838, 948, 1054, 1061
MaeIII GTNAC 2 cut(s) 1029, 1166
MboII GAAGA 8 cut(s) 494, 497, 524, 527, 676, 746, 860, 1649
MflI RGATCY 2 cut(s) 611, 1322
MhlI GDGCHC 2 cut(s) 326, 911
MlyI GAGTC 2 cut(s) 940, 1618
Mph1103I ATGCAT 2 cut(s) 53, 340
MroI TCCGGA 1 cut(s) 1627
MseI TTAA 5 cut(s) 249, 434, 960, 1143, 1208
MslI CAYNNNNRTG 1 cut(s) 206
MspA1I CMGCKG 1 cut(s) 160
MspI CCGG 4 cut(s) 55, 1177, 1571, 1628
MspR9I CCNGG 3 cut(s) 56, 571, 1346
Mva1269I GAATGC 1 cut(s) 1197
MvaI CCWGG 2 cut(s) 571, 1346
MvnI CGCG 3 cut(s) 320, 647, 689
MwoI GCNNNNNNNGC 4 cut(s) 170, 596, 653, 814
NciI CCSGG 1 cut(s) 56
NlaIII CATG 4 cut(s) 92, 208, 865, 1195
NlaIV GGNNCC 4 cut(s) 274, 324, 563, 1324
NmuCI GTSAC 1 cut(s) 1166
NsiI ATGCAT 2 cut(s) 53, 340
PaeR7I CTCGAG 1 cut(s) 419
PctI GAATGC 1 cut(s) 1197
PfeI GAWTC 4 cut(s) 713, 749, 1129, 1423
PkrI GCNGC 5 cut(s) 166, 403, 1114, 1252, 1543
PleI GAGTC 2 cut(s) 939, 1618
PpsI GAGTC 2 cut(s) 939, 1618
Psp6I CCWGG 2 cut(s) 569, 1344
PspEI GGTNACC 1 cut(s) 1166
PspGI CCWGG 2 cut(s) 569, 1344
PspN4I GGNNCC 4 cut(s) 274, 324, 563, 1324
PspOMI GGGCCC 1 cut(s) 322
PspPI GGNCC 4 cut(s) 242, 322, 323, 424
PsuI RGATCY 2 cut(s) 611, 1322
PvuII CAGCTG 1 cut(s) 160
RsaI GTAC 3 cut(s) 116, 1351, 1439
RsaNI GTAC 3 cut(s) 115, 1350, 1438
RseI CAYNNNNRTG 1 cut(s) 206
SaqAI TTAA 5 cut(s) 249, 434, 960, 1143, 1208
SatI GCNGC 5 cut(s) 165, 402, 1113, 1251, 1542
Sau96I GGNCC 4 cut(s) 242, 322, 323, 424
ScaI AGTACT 1 cut(s) 1439
SchI GAGTC 2 cut(s) 940, 1618
ScrFI CCNGG 3 cut(s) 56, 571, 1346
SduI GDGCHC 2 cut(s) 326, 911
SfaNI GCATC 3 cut(s) 60, 347, 727
SfcI CTRYAG 2 cut(s) 168, 1441
Sfr274I CTCGAG 1 cut(s) 419
SinI GGWCC 2 cut(s) 242, 424
SlaI CTCGAG 1 cut(s) 419
SmiMI CAYNNNNRTG 1 cut(s) 206
SmlI CTYRAG 2 cut(s) 67, 419
SmoI CTYRAG 2 cut(s) 67, 419
SpeI ACTAGT 2 cut(s) 1033, 1450
SsiI CCGC 8 cut(s) 320, 552, 647, 1250, 1277, 1368, 1542, 1619
SspI AATATT 2 cut(s) 431, 1589
SspMI CTAG 5 cut(s) 185, 857, 1034, 1311, 1451
StyD4I CCNGG 3 cut(s) 54, 569, 1344
StyI CCWWGG 2 cut(s) 36, 1512
TaaI ACNGT 2 cut(s) 372, 396
TaiI ACGT 6 cut(s) 116, 535, 841, 951, 1057, 1064
TaqI TCGA 5 cut(s) 420, 500, 921, 1266, 1282
TaqII GACCGA 1 cut(s) 230
TatI WGTACW 1 cut(s) 1437
TauI GCSGC 2 cut(s) 1253, 1544
TfiI GAWTC 4 cut(s) 713, 749, 1129, 1423
Tru1I TTAA 5 cut(s) 249, 434, 960, 1143, 1208
Tru9I TTAA 5 cut(s) 249, 434, 960, 1143, 1208
TscAI CASTG 1 cut(s) 1339
TseFI GTSAC 1 cut(s) 1166
TseI GCWGC 3 cut(s) 164, 401, 1112
Tsp45I GTSAC 1 cut(s) 1166
TspDTI ATGAA 7 cut(s) 214, 297, 565, 726, 865, 1447, 1658
TspGWI ACGGA 2 cut(s) 372, 997
TspRI CASTG 1 cut(s) 1339
VpaK11BI GGWCC 2 cut(s) 242, 424
XapI RAATTY 3 cut(s) 129, 413, 826
XhoI CTCGAG 1 cut(s) 419
XmiI GTMKAC 1 cut(s) 934
XspI CTAG 5 cut(s) 185, 857, 1034, 1311, 1451
ZrmI AGTACT 1 cut(s) 1439
Zsp2I ATGCAT 2 cut(s) 53, 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.