Rorug04G0185200

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000950
Physical Location & Seq
Reverse (-)
32207415 .. 32210397
2983 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0185200.1

Sequence Viewer

Length: 669 bp
ATGGGTATCTCACGTGACTCGATGCACAAGAGGCGTGCCACTGGAGGCAAGAAGAAGGCTTGGAGGAAGAAGAGAAAGTATGAGCTCGGTCGTCAGCCTGCAAACACTAAGCTTTCAAGCAACAAGACTGTGAGGCGAATCCGTGTCCGAGGAGGTAATGTGAAGTGGAGGGCTCTCAGGTTGGACACTGGCAACTTTTCATGGGGTAGTGAAGCTGTTACTCGTAAAACACGTCTTCTGGATGTGGTTTACAATGCCTCAAACAATGAACTTGTTAGAACACAAACCCTTGTAAAAGGTGCAATTGTCCAAGTTGATGCAGCCCCTTTTAGGCAATGGTACCTTCAGCACTACAATGTTGAGGTTGGAAAAAAGAAAAAGACTGCTGCTGTTAAGAAGGATACTCCAGAGGAGGCAGAAGCAGCTCCTGTGGAGGAGGCAAAGAAGAGTAATCATCTAACCCGAAAGATTGAGAAGCGTGTGCAAGTTCGTACACTGGACTCTCACATTGAAGAGCAGTTTGGGGGTGGTAGATTGTTGGCCTGCATATCTTCCCGTCCTGGACAATGTGGAAGAGCTGATGGGTACATCTTGGAAGGTAAGGAGCTTGAGTTCTACATGAAGAAGCTCCAGAGGAAGAAGGGGAAGGGTGCTGCCGCCACTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

222

Amino Acids

25.12

Weight (kDa)

10.47

Isoelectric Point (pI)

49.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S8e PF01201 5 - 198 1.7e-53 Ribosomal protein S8e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 339
AccB1I GGYRCC 1 cut(s) 339
AciI CCGC 1 cut(s) 657
AcuI CTGAAG 1 cut(s) 329
AcvI CACGTG 1 cut(s) 14
AfaI GTAC 3 cut(s) 341, 493, 587
AfiI CCNNNNNNNGG 1 cut(s) 330
AflIII ACRYGT 1 cut(s) 230
AgsI TTSAA 2 cut(s) 117, 512
AjiI CACGTC 1 cut(s) 233
AjnI CCWGG 1 cut(s) 559
AjuI GAANNNNNNNTTGG 2 cut(s) 504, 536
AloI GAACNNNNNNTCC 2 cut(s) 596, 628
AluBI AGCT 7 cut(s) 85, 112, 215, 425, 578, 607, 628
AluI AGCT 7 cut(s) 85, 112, 215, 425, 578, 607, 628
Alw21I GWGCWC 1 cut(s) 87
AlwNI CAGNNNCTG 1 cut(s) 428
AoxI GGCC 1 cut(s) 540
ApeKI GCWGC 4 cut(s) 320, 386, 422, 653
Asp718I GGTACC 1 cut(s) 339
BanI GGYRCC 1 cut(s) 339
BanII GRGCYC 2 cut(s) 87, 175
BbrPI CACGTG 1 cut(s) 14
BbsI GAAGAC 1 cut(s) 227
Bbv12I GWGCWC 1 cut(s) 87
BbvI GCAGC 4 cut(s) 332, 373, 434, 640
BccI CCATC 1 cut(s) 575
BciT130I CCWGG 1 cut(s) 561
BciVI GTATCC 1 cut(s) 394
BfuI GTATCC 1 cut(s) 394
BisI GCNGC 5 cut(s) 321, 387, 423, 654, 657
BlsI GCNGC 5 cut(s) 322, 388, 424, 655, 658
Bme1390I CCNGG 1 cut(s) 561
BmgBI CACGTC 1 cut(s) 233
BmiI GGNNCC 1 cut(s) 341
BmrFI CCNGG 1 cut(s) 561
BmsI GCATC 2 cut(s) 12, 307
BpiI GAAGAC 1 cut(s) 227
BpmI CTGGAG 3 cut(s) 63, 390, 614
BpuEI CTTGAG 1 cut(s) 629
BsaAI YACGTR 1 cut(s) 14
BsaJI CCNNGG 1 cut(s) 148
BsaXI ACNNNNNCTCC 4 cut(s) 144, 174, 596, 626
Bsc4I CCNNNNNNNGG 1 cut(s) 330
Bse1I ACTGG 3 cut(s) 46, 193, 501
Bse3DI GCAATG 1 cut(s) 341
BseBI CCWGG 1 cut(s) 561
BseDI CCNNGG 1 cut(s) 148
BseGI GGATG 1 cut(s) 247
BseLI CCNNNNNNNGG 1 cut(s) 330
BseMI GCAATG 1 cut(s) 341
BseMII CTCAG 1 cut(s) 190
BseNI ACTGG 3 cut(s) 46, 193, 501
BseRI GAGGAG 3 cut(s) 165, 425, 449
BseXI GCAGC 4 cut(s) 332, 373, 434, 640
Bsh1285I CGRYCG 1 cut(s) 91
BshFI GGCC 1 cut(s) 542
BshNI GGYRCC 1 cut(s) 339
BsiEI CGRYCG 1 cut(s) 91
BsiHKAI GWGCWC 1 cut(s) 87
BslI CCNNNNNNNGG 1 cut(s) 330
BsnI GGCC 1 cut(s) 542
Bsp1286I GDGCHC 2 cut(s) 87, 175
BspACI CCGC 1 cut(s) 657
BspANI GGCC 1 cut(s) 542
BspCNI CTCAG 1 cut(s) 189
BspLI GGNNCC 1 cut(s) 341
BspQI GCTCTTC 2 cut(s) 507, 568
BspT107I GGYRCC 1 cut(s) 339
BsrDI GCAATG 1 cut(s) 341
BsrI ACTGG 3 cut(s) 46, 193, 501
BssECI CCNNGG 1 cut(s) 148
Bst2UI CCWGG 1 cut(s) 561
Bst4CI ACNGT 1 cut(s) 130
Bst6I CTCTTC 4 cut(s) 65, 440, 507, 568
BstBAI YACGTR 1 cut(s) 14
BstC8I GCNNGC 3 cut(s) 36, 99, 544
BstDEI CTNAG 2 cut(s) 108, 176
BstF5I GGATG 1 cut(s) 247
BstMCI CGRYCG 1 cut(s) 91
BstMWI GCNNNNNNNGC 2 cut(s) 31, 422
BstNI CCWGG 1 cut(s) 561
BstSCI CCNGG 1 cut(s) 559
BstV1I GCAGC 4 cut(s) 332, 373, 434, 640
BstV2I GAAGAC 1 cut(s) 227
BsuI GTATCC 1 cut(s) 394
BsuRI GGCC 1 cut(s) 542
BtrI CACGTC 1 cut(s) 233
BtsCI GGATG 1 cut(s) 247
BtsIMutI CAGTG 3 cut(s) 39, 186, 494
Cac8I GCNNGC 3 cut(s) 36, 99, 544
CaiI CAGNNNCTG 1 cut(s) 428
Csp6I GTAC 3 cut(s) 340, 492, 586
CviAII CATG 2 cut(s) 201, 619
CviQI GTAC 3 cut(s) 340, 492, 586
DdeI CTNAG 2 cut(s) 108, 176
Eam1104I CTCTTC 4 cut(s) 65, 440, 507, 568
EarI CTCTTC 4 cut(s) 65, 440, 507, 568
Ecl136II GAGCTC 1 cut(s) 85
Eco24I GRGCYC 2 cut(s) 87, 175
Eco53kI GAGCTC 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 329
Eco72I CACGTG 1 cut(s) 14
EcoICRI GAGCTC 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 559
EcoT38I GRGCYC 2 cut(s) 87, 175
FaeI CATG 2 cut(s) 204, 622
FaiI YATR 4 cut(s) 81, 202, 548, 620
FatI CATG 2 cut(s) 200, 618
Fnu4HI GCNGC 5 cut(s) 321, 387, 423, 654, 657
FokI GGATG 1 cut(s) 254
FriOI GRGCYC 2 cut(s) 87, 175
Fsp4HI GCNGC 5 cut(s) 321, 387, 423, 654, 657
GluI GCNGC 5 cut(s) 321, 387, 423, 654, 657
GsuI CTGGAG 3 cut(s) 63, 390, 614
HaeIII GGCC 1 cut(s) 542
Hin1II CATG 2 cut(s) 204, 622
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 3 cut(s) 17, 138, 500
Hpy166II GTNNAC 2 cut(s) 250, 494
Hpy188I TCNGA 1 cut(s) 149
Hpy188III TCNNGA 3 cut(s) 239, 407, 631
Hpy8I GTNNAC 2 cut(s) 250, 494
HpyAV CCTTC 6 cut(s) 49, 353, 391, 590, 634, 640
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4IV ACGT 2 cut(s) 13, 232
HpyCH4V TGCA 6 cut(s) 25, 101, 302, 320, 484, 546
HpyF10VI GCNNNNNNNGC 2 cut(s) 31, 422
HpyF3I CTNAG 2 cut(s) 108, 176
HpySE526I ACGT 2 cut(s) 13, 232
Hsp92II CATG 2 cut(s) 204, 622
KpnI GGTACC 1 cut(s) 343
LguI GCTCTTC 2 cut(s) 507, 568
LmnI GCTCC 3 cut(s) 430, 604, 633
Lsp1109I GCAGC 4 cut(s) 332, 373, 434, 640
LweI GCATC 2 cut(s) 12, 307
MaeII ACGT 2 cut(s) 13, 232
MaeIII GTNAC 2 cut(s) 14, 217
MfeI CAATTG 1 cut(s) 303
MhlI GDGCHC 2 cut(s) 87, 175
MluCI AATT 1 cut(s) 303
MlyI GAGTC 2 cut(s) 11, 494
MmeI TCCRAC 2 cut(s) 162, 346
MseI TTAA 1 cut(s) 393
MslI CAYNNNNRTG 1 cut(s) 354
MspR9I CCNGG 1 cut(s) 561
MunI CAATTG 1 cut(s) 303
MvaI CCWGG 1 cut(s) 561
MwoI GCNNNNNNNGC 2 cut(s) 31, 422
NlaIII CATG 2 cut(s) 204, 622
NlaIV GGNNCC 1 cut(s) 341
NmuCI GTSAC 1 cut(s) 14
PciSI GCTCTTC 2 cut(s) 507, 568
PcsI WCGNNNNNNNCGW 1 cut(s) 229
PfeI GAWTC 1 cut(s) 138
PfoI TCCNGGA 1 cut(s) 559
PkrI GCNGC 5 cut(s) 322, 388, 424, 655, 658
PleI GAGTC 2 cut(s) 11, 494
PmaCI CACGTG 1 cut(s) 14
PmlI CACGTG 1 cut(s) 14
PpsI GAGTC 2 cut(s) 11, 494
Ppu21I YACGTR 1 cut(s) 14
Psp124BI GAGCTC 1 cut(s) 87
Psp6I CCWGG 1 cut(s) 559
PspCI CACGTG 1 cut(s) 14
PspGI CCWGG 1 cut(s) 559
PspN4I GGNNCC 1 cut(s) 341
PstNI CAGNNNCTG 1 cut(s) 428
RsaI GTAC 3 cut(s) 341, 493, 587
RsaNI GTAC 3 cut(s) 340, 492, 586
RseI CAYNNNNRTG 1 cut(s) 354
SacI GAGCTC 1 cut(s) 87
SapI GCTCTTC 2 cut(s) 507, 568
SaqAI TTAA 1 cut(s) 393
SatI GCNGC 5 cut(s) 321, 387, 423, 654, 657
SchI GAGTC 2 cut(s) 11, 494
ScrFI CCNGG 1 cut(s) 561
SduI GDGCHC 2 cut(s) 87, 175
SfaNI GCATC 2 cut(s) 12, 307
SmiMI CAYNNNNRTG 1 cut(s) 354
SmlI CTYRAG 1 cut(s) 608
SmoI CTYRAG 1 cut(s) 608
Sse9I AATT 1 cut(s) 303
SsiI CCGC 1 cut(s) 657
SstI GAGCTC 1 cut(s) 87
StyD4I CCNGG 1 cut(s) 559
TaaI ACNGT 1 cut(s) 130
TaiI ACGT 2 cut(s) 16, 235
TaqI TCGA 1 cut(s) 20
TaqII GACCGA 1 cut(s) 77
TasI AATT 1 cut(s) 303
TauI GCSGC 1 cut(s) 659
TfiI GAWTC 1 cut(s) 138
Tru1I TTAA 1 cut(s) 393
Tru9I TTAA 1 cut(s) 393
TscAI CASTG 3 cut(s) 46, 193, 501
TseFI GTSAC 1 cut(s) 14
TseI GCWGC 4 cut(s) 320, 386, 422, 653
Tsp45I GTSAC 1 cut(s) 14
TspDTI ATGAA 3 cut(s) 189, 282, 635
TspGWI ACGGA 1 cut(s) 131
TspRI CASTG 3 cut(s) 46, 193, 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.