Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0000950

Physical Location & Seq

Genomic Coordinates Forward (+)

22362796 .. 22471272

Gene Structure 108477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG236300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGTCCAGAATACTTACAATAATGAGAGACTGGTTCCGAAACTGGTTTCAAAATTACCGCTACTTTTCCAGGGCTACAATATGCATCCGGGGTTTGGTTTTCAGCCATAGCTTCGCAAACCATGCCATAGTATCTATATTGATAACGTACCTTACGACCATATGGAACCATCCACATGCTCAGATGGCTGTTGTAGTGATGAATCTGCAAGATGGGGTATTAGATATTATGGTCAGTATCCTCGCGCATATTCCACGCACGTACATAGGTTTGTTCACAGTAATTGCCACCACCAATGCTTCATATATTATTGGGCTTCTTCTGTTATGGCTTTCTGCTGGGTATATGAGTGACGGTACTGCATCTAGGGTATTCTATGGAGCTATGGTACTAGTAACATTAGGCGAAGCTGGGCGGTGGGCTGCTTTGCGAGAATTTCTGGATGAACAATATTCAAGAGAACAAAATCATGAGGAACGCACATATGATGAAAATAAGGATAAGAAAGAAGCTTTGTGGATGCTTCCTTGGTTTTTAGGTGCAGTGATTCCTCTTTTCCTTTTAAAAACAACTTGGCCACAAAGATTCATGATATCAACAATTGCAATGACGGTTTCTTATTTAGGATTCTTGTTGGGCTTTCCCTATTATTTCACATACAATATGACTAATACTGAACAAGGCCAAGATGCTCGCCCAGAAGAAGTCAATTATCTAGAACAAGCACCAAGAGTCCCTGAACCAACAAGGTCAGGAAATGTATGGAGACTGATAAATATATTAAGGAAAGGTGAACGTTTTCTCATAGAAGCATTAGCTATATGGTTAGCCTTCCTCCTTGCATACAGTGTTGTAAAGGCAGCAGGAAGCACGTTTTTTTTTTCAACAAATGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

298

Amino Acids

34.38

Weight (kDa)

8.58

Isoelectric Point (pI)

39.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000950)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18590
malus_domestica	MD13G1165300.v1.1 MD13G1165400.v1.1
prunus_persica	Prupe.1G124400_v2.0.a1 Prupe.1G124400_v2.0.a1 Prupe.1G124400_v2.0.a1 Prupe.1G124600_v2.0.a1 Prupe.1G124900_v2.0.a1 Prupe.1G125000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0477071 RchiOBHm_Chr3g0477161 RchiOBHm_Chr4g0387871 RchiOBHm_Chr4g0405251 RchiOBHm_Chr4g0422731
rosa_laevigata	RLG00000007575 RLG00000007576 RLG00000010048 RLG00000023495
rosa_multiflora	Rmu_sc0000288.1_g000003 Rmu_sc0000311.1_g000011 Rmu_sc0000932.1_g000003 Rmu_sc0002038.1_g000019 Rmu_sc0002509.1_g000023 Rmu_sc0010329.1_g000001 Rmu_sc0012115.1_g000003
rosa_roxburghii	Rroxscaffold_5G00334470 Rroxscaffold_5G00349590 Rroxscaffold_5G00365230 Rroxscaffold_5G00365400 Rroxscaffold_6G00401580 Rroxscaffold_6G00404380 Rroxscaffold_6G00404870
rosa_rugosa	Rorug03G0182100.1 Rorug04G0185200 Rorug04G0185300 Rorug04G0185400
rosa_samantha	Rh3AG208700 Rh3AG233900 Rh3AG234000 Rh3BG241900 Rh3BG242300 Rh3BG266200 Rh3CG236300 Rh3CG236400 Rh3CG263900 Rh3DG235200 Rh3DG259300 Rh4AG019100 Rh4AG130000 Rh4AG241000 Rh4AG244600 Rh4AG245300 Rh4BG124300 Rh4BG244300 Rh4BG249800 Rh4BG250500 Rh4CG255100 Rh4DG123600 Rh4DG239700 Rh4DG244900
rosa_wichuraiana	Rw3G019030 Rw3G021020 Rw4G010520 Rw4G021070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	245
AciI	CCGC	2 cut(s)	58, 415
AclI	AACGTT	1 cut(s)	796
AcoI	YGGCCR	1 cut(s)	575
AcsI	RAATTY	1 cut(s)	434
AfaI	GTAC	4 cut(s)	149, 263, 358, 390
AfiI	CCNNNNNNNGG	1 cut(s)	94
AgsI	TTSAA	3 cut(s)	50, 456, 885
AhlI	ACTAGT	1 cut(s)	391
AjnI	CCWGG	1 cut(s)	68
AluBI	AGCT	5 cut(s)	111, 383, 410, 512, 818
AluI	AGCT	5 cut(s)	111, 383, 410, 512, 818
Alw26I	GTCTC	2 cut(s)	21, 760
AoxI	GGCC	2 cut(s)	575, 682
ApeKI	GCWGC	2 cut(s)	422, 860
ApoI	RAATTY	1 cut(s)	434
Asp700I	GAANNNNTTC	1 cut(s)	798
AspLEI	GCGC	1 cut(s)	247
AsuC2I	CCSGG	1 cut(s)	89
AsuHPI	GGTGA	1 cut(s)	803
BalI	TGGCCA	1 cut(s)	577
BbvI	GCAGC	2 cut(s)	409, 872
BccI	CCATC	3 cut(s)	177, 178, 206
BciT130I	CCWGG	1 cut(s)	70
BciVI	GTATCC	1 cut(s)	248
BcnI	CCSGG	1 cut(s)	89
BcoDI	GTCTC	2 cut(s)	21, 760
BcuI	ACTAGT	1 cut(s)	391
BfaI	CTAG	3 cut(s)	366, 392, 716
BfuI	GTATCC	1 cut(s)	248
BisI	GCNGC	2 cut(s)	423, 861
BlsI	GCNGC	2 cut(s)	424, 862
Bme1390I	CCNGG	2 cut(s)	70, 89
BmiI	GGNNCC	2 cut(s)	35, 167
BmrFI	CCNGG	2 cut(s)	70, 89
BmsI	GCATC	4 cut(s)	93, 371, 510, 679
BpuMI	CCSGG	1 cut(s)	89
BsaAI	YACGTR	1 cut(s)	261
BsaJI	CCNNGG	3 cut(s)	69, 88, 527
BsaXI	ACNNNNNCTCC	2 cut(s)	372, 402
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse1I	ACTGG	2 cut(s)	35, 47
Bse3DI	GCAATG	1 cut(s)	612
BseBI	CCWGG	1 cut(s)	70
BseDI	CCNNGG	3 cut(s)	69, 88, 527
BseGI	GGATG	4 cut(s)	84, 169, 448, 525
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMI	GCAATG	1 cut(s)	612
BseMII	CTCAG	1 cut(s)	194
BseNI	ACTGG	2 cut(s)	35, 47
BseXI	GCAGC	2 cut(s)	409, 872
BseYI	CCCAGC	2 cut(s)	338, 410
BsgI	GTGCAG	1 cut(s)	561
Bsh1236I	CGCG	1 cut(s)	245
BshFI	GGCC	2 cut(s)	577, 684
BsiSI	CCGG	1 cut(s)	88
BslFI	GGGAC	1 cut(s)	719
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmAI	GTCTC	2 cut(s)	21, 760
BsmFI	GGGAC	1 cut(s)	719
BsnI	GGCC	2 cut(s)	577, 684
BspACI	CCGC	2 cut(s)	58, 415
BspANI	GGCC	2 cut(s)	577, 684
BspCNI	CTCAG	1 cut(s)	193
BspFNI	CGCG	1 cut(s)	245
BspHI	TCATGA	2 cut(s)	469, 588
BspLI	GGNNCC	2 cut(s)	35, 167
BsrDI	GCAATG	1 cut(s)	612
BsrI	ACTGG	2 cut(s)	35, 47
BssECI	CCNNGG	3 cut(s)	69, 88, 527
BssT1I	CCWWGG	1 cut(s)	527
Bst2UI	CCWGG	1 cut(s)	70
Bst4CI	ACNGT	4 cut(s)	280, 356, 613, 848
BstAPI	GCANNNNNTGC	1 cut(s)	122
BstBAI	YACGTR	1 cut(s)	261
BstC8I	GCNNGC	1 cut(s)	694
BstDEI	CTNAG	1 cut(s)	180
BstF5I	GGATG	4 cut(s)	84, 169, 448, 525
BstFNI	CGCG	1 cut(s)	245
BstHHI	GCGC	1 cut(s)	247
BstMAI	GTCTC	2 cut(s)	21, 760
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 185
BstNI	CCWGG	1 cut(s)	70
BstNSI	RCATGY	1 cut(s)	179
BstSCI	CCNGG	2 cut(s)	68, 87
BstUI	CGCG	1 cut(s)	245
BstV1I	GCAGC	2 cut(s)	409, 872
BsuI	GTATCC	1 cut(s)	248
BsuRI	GGCC	2 cut(s)	577, 684
BtsCI	GGATG	4 cut(s)	84, 169, 448, 525
BtsI	GCAGTG	1 cut(s)	549
BtsIMutI	CAGTG	2 cut(s)	549, 853
Cac8I	GCNNGC	1 cut(s)	694
CciI	TCATGA	2 cut(s)	469, 588
CfoI	GCGC	1 cut(s)	247
Csp6I	GTAC	4 cut(s)	148, 262, 357, 389
CviAII	CATG	4 cut(s)	122, 176, 470, 589
CviQI	GTAC	4 cut(s)	148, 262, 357, 389
DdeI	CTNAG	1 cut(s)	180
DraI	TTTAAA	1 cut(s)	564
EaeI	YGGCCR	1 cut(s)	575
Eco130I	CCWWGG	1 cut(s)	527
Eco32I	GATATC	1 cut(s)	594
EcoRII	CCWGG	1 cut(s)	68
EcoRV	GATATC	1 cut(s)	594
EcoT14I	CCWWGG	1 cut(s)	527
EcoT22I	ATGCAT	1 cut(s)	86
ErhI	CCWWGG	1 cut(s)	527
FaeI	CATG	4 cut(s)	125, 179, 473, 592
FaqI	GGGAC	1 cut(s)	719
FatI	CATG	4 cut(s)	121, 175, 469, 588
FauNDI	CATATG	2 cut(s)	161, 484
Fnu4HI	GCNGC	2 cut(s)	423, 861
FokI	GGATG	4 cut(s)	71, 156, 455, 532
Fsp4HI	GCNGC	2 cut(s)	423, 861
FspBI	CTAG	3 cut(s)	366, 392, 716
GlaI	GCGC	1 cut(s)	246
GluI	GCNGC	2 cut(s)	423, 861
GsaI	CCCAGC	2 cut(s)	342, 414
HaeIII	GGCC	2 cut(s)	577, 684
HapII	CCGG	1 cut(s)	88
HhaI	GCGC	1 cut(s)	247
Hin1II	CATG	4 cut(s)	125, 179, 473, 592
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HindIII	AAGCTT	1 cut(s)	510
HinfI	GANTC	5 cut(s)	202, 547, 585, 627, 732
HpaII	CCGG	1 cut(s)	88
HphI	GGTGA	1 cut(s)	803
Hpy166II	GTNNAC	2 cut(s)	276, 794
Hpy188I	TCNGA	2 cut(s)	38, 183
Hpy188III	TCNNGA	7 cut(s)	6, 440, 456, 470, 589, 716, 753
Hpy8I	GTNNAC	2 cut(s)	276, 794
HpyAV	CCTTC	1 cut(s)	841
HpyCH4III	ACNGT	4 cut(s)	280, 356, 613, 848
HpyCH4IV	ACGT	4 cut(s)	146, 260, 796, 872
HpyCH4V	TGCA	6 cut(s)	84, 208, 362, 542, 605, 842
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 185
HpyF3I	CTNAG	1 cut(s)	180
HpySE526I	ACGT	4 cut(s)	146, 260, 796, 872
Hsp92II	CATG	4 cut(s)	125, 179, 473, 592
HspAI	GCGC	1 cut(s)	245
LmnI	GCTCC	1 cut(s)	380
Lsp1109I	GCAGC	2 cut(s)	409, 872
LweI	GCATC	4 cut(s)	93, 371, 510, 679
MaeI	CTAG	3 cut(s)	366, 392, 716
MaeII	ACGT	4 cut(s)	146, 260, 796, 872
MaeIII	GTNAC	2 cut(s)	350, 394
MboII	GAAGA	2 cut(s)	311, 713
MfeI	CAATTG	1 cut(s)	600
MlsI	TGGCCA	1 cut(s)	577
MluCI	AATT	5 cut(s)	52, 282, 434, 600, 709
MluNI	TGGCCA	1 cut(s)	577
MlyI	GAGTC	1 cut(s)	741
MnlI	CCTC	4 cut(s)	251, 466, 561, 845
Mox20I	TGGCCA	1 cut(s)	577
Mph1103I	ATGCAT	1 cut(s)	86
MroXI	GAANNNNTTC	1 cut(s)	798
MscI	TGGCCA	1 cut(s)	577
MseI	TTAA	2 cut(s)	563, 782
MslI	CAYNNNNRTG	1 cut(s)	174
Msp20I	TGGCCA	1 cut(s)	577
MspI	CCGG	1 cut(s)	88
MspR9I	CCNGG	2 cut(s)	70, 89
MunI	CAATTG	1 cut(s)	600
MvaI	CCWGG	1 cut(s)	70
MvnI	CGCG	1 cut(s)	245
MwoI	GCNNNNNNNGC	2 cut(s)	122, 185
NciI	CCSGG	1 cut(s)	89
NdeI	CATATG	2 cut(s)	161, 484
NlaIII	CATG	4 cut(s)	125, 179, 473, 592
NlaIV	GGNNCC	2 cut(s)	35, 167
NmuCI	GTSAC	1 cut(s)	350
NsiI	ATGCAT	1 cut(s)	86
NspI	RCATGY	1 cut(s)	179
PagI	TCATGA	2 cut(s)	469, 588
PcsI	WCGNNNNNNNCGW	1 cut(s)	152
PdmI	GAANNNNTTC	1 cut(s)	798
PfeI	GAWTC	4 cut(s)	202, 547, 585, 627
PkrI	GCNGC	2 cut(s)	424, 862
PleI	GAGTC	1 cut(s)	740
PpsI	GAGTC	1 cut(s)	740
Ppu21I	YACGTR	1 cut(s)	261
Psp1406I	AACGTT	1 cut(s)	796
Psp6I	CCWGG	1 cut(s)	68
PspFI	CCCAGC	2 cut(s)	338, 410
PspGI	CCWGG	1 cut(s)	68
PspN4I	GGNNCC	2 cut(s)	35, 167
RsaI	GTAC	4 cut(s)	149, 263, 358, 390
RsaNI	GTAC	4 cut(s)	148, 262, 357, 389
RseI	CAYNNNNRTG	1 cut(s)	174
SaqAI	TTAA	2 cut(s)	563, 782
SatI	GCNGC	2 cut(s)	423, 861
SchI	GAGTC	1 cut(s)	741
ScrFI	CCNGG	2 cut(s)	70, 89
SfaNI	GCATC	4 cut(s)	93, 371, 510, 679
SmiMI	CAYNNNNRTG	1 cut(s)	174
SpeI	ACTAGT	1 cut(s)	391
Sse9I	AATT	5 cut(s)	52, 282, 434, 600, 709
SsiI	CCGC	2 cut(s)	58, 415
SspI	AATATT	1 cut(s)	452
SspMI	CTAG	3 cut(s)	366, 392, 716
StyD4I	CCNGG	2 cut(s)	68, 87
StyI	CCWWGG	1 cut(s)	527
TaaI	ACNGT	4 cut(s)	280, 356, 613, 848
TaiI	ACGT	4 cut(s)	149, 263, 799, 875
TasI	AATT	5 cut(s)	52, 282, 434, 600, 709
TfiI	GAWTC	4 cut(s)	202, 547, 585, 627
Tru1I	TTAA	2 cut(s)	563, 782
Tru9I	TTAA	2 cut(s)	563, 782
TscAI	CASTG	2 cut(s)	549, 853
TseFI	GTSAC	1 cut(s)	350
TseI	GCWGC	2 cut(s)	422, 860
Tsp45I	GTSAC	1 cut(s)	350
TspDTI	ATGAA	5 cut(s)	215, 291, 459, 504, 577
TspRI	CASTG	2 cut(s)	549, 853
XapI	RAATTY	1 cut(s)	434
XbaI	TCTAGA	1 cut(s)	715
XceI	RCATGY	1 cut(s)	179
XmnI	GAANNNNTTC	1 cut(s)	798
XspI	CTAG	3 cut(s)	366, 392, 716
Zsp2I	ATGCAT	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.