Rh3BG241900

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000950
Physical Location & Seq
Forward (+)
22767589 .. 22777048
9460 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG241900.1

Sequence Viewer

Length: 1437 bp
ATGTGGAAGTATCCACATGCTCAGACAGCTGTTGTAGTGATGAATATGCAAGATGGGGTATTAGACATTATGGTCATTATCCTCGCGCATATTCCTCGCACGTACATCGGTTTGTTTAGGGTAATTGCCACCACCAATGCTTCATATATTATTGGGCTTCTTCTGTTATGGCTTTCTGCTGGGTATATGAGTGACGGTACTGCATCTAGGGTATTCTATGGAGCTATGGTACTCGTAACATTAGGCGAAGCTGGGCGGTGGGCTGCTTTGCGAGAATTTCTGGATGAACAATATTCAAGAGAACAAAATCATGCGGAACGCACATATGATGAAAATAAGGATAAGAAAGAAGCTTTGTGGATGCTTCCTTGGTTTTTAGGTGCAGTGATTCCTCTTTTCCTTTTAAAAACAACTTGGCCACAAAGATTCATGATATCAACAATTGCAATGACGGTTTCTTATTTAGGATTCTTGTTGGGCTTTCCCTATTATTTCACTTACAATATGACTAATACTGAACAAGGCCAAGATGCTCGCCCAGAAGAAGTCAATTATCTAGAACAAGCACCAAGAGTCCCTGAACCAACAAGGTCAGGAAATGTACGGAGACTGATCAATATATTAAGGAAAGATGAACGTTTTCTCATAGAGGCATTAGCTATATGGTTAGCCTTCCTCCTTGCATACAGTGTTGTAAAGGCAGCAGGAAGCACGTTCTTTTTTCAACGAATGGATTACTTGGATAACCCTTTCGATAACTATGATCCTGCAGTCTATCTCAATGTGTTTGCCTCATTTTCAAAGTGGTTGATCTCATTTCTATGGAACTTAATTCCAAGGAATTGGAAACCATCGCGGCTGAGGATTTCGTACGGAATGGCTTGTATTGTGCTTTGTTGTCTTGTTGCTTGGCAAGTTGAGAGCTACAGGTTAAACACTACAAATATGAGCATCTTTTGGTTGGTTCCTCAGTTCTTCTATTTAGGAGTCATGGAAGGCCTAGCCATGTTTGGAATGATCGATTTTCTTGTTGATCGAGTGTCTGCAGGTGATAAAGTAATGGTCGCATATTATGGATCCCACACCACTGTGTTGATCATAGGTATTGGAAAAATACTTGTTGGTCTTAGTGTTTTGGCGCTCAGAGGAAGCTGGTTTGATGACAACAGCTTAGATGCCAGTCATCTTCATAAATATTACAGAGCATTAACAACCTTAACTTCTGTTGTCTTCTTCTTCCACTGTTGTATCGCCTTTTACTATTACACTAGGGAAGAATTACAAGATGAGACGCCTTCATCGGTGACAATTGAGATGGTGAATCAGAATCAGCCACAGATAGACCCGTCGCCACATAACCCTGATAATGCATTTACTGAGACGCTTGATGACAGAGTTGGGTTATCTTATTTATTGGGACAGTTTGTGGGTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

478

Amino Acids

54.92

Weight (kDa)

5.68

Isoelectric Point (pI)

39.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1037
AasI GACNNNNNNGTC 1 cut(s) 71
Acc36I ACCTGC 1 cut(s) 1037
AccII CGCG 2 cut(s) 86, 856
AciI CCGC 3 cut(s) 256, 314, 856
AclI AACGTT 1 cut(s) 637
AclWI GGATC 3 cut(s) 758, 1071, 1084
AcoI YGGCCR 1 cut(s) 416
AcsI RAATTY 1 cut(s) 275
AcyI GRCGYC 1 cut(s) 1292
AfaI GTAC 5 cut(s) 104, 199, 231, 603, 872
AgsI TTSAA 3 cut(s) 297, 725, 801
AleI CACNNNNGTG 1 cut(s) 1088
AluBI AGCT 8 cut(s) 29, 224, 251, 353, 659, 924, 1152, 1170
AluI AGCT 8 cut(s) 29, 224, 251, 353, 659, 924, 1152, 1170
Alw26I GTCTC 3 cut(s) 601, 1283, 1373
AlwI GGATC 3 cut(s) 758, 1071, 1084
AoxI GGCC 3 cut(s) 416, 523, 997
ApeKI GCWGC 2 cut(s) 263, 701
ApoI RAATTY 1 cut(s) 275
Asp700I GAANNNNTTC 1 cut(s) 639
AspLEI GCGC 2 cut(s) 88, 1141
AsuHPI GGTGA 3 cut(s) 1061, 1315, 1330
BaeI ACNNNNGTAYC 2 cut(s) 1231, 1264
BalI TGGCCA 1 cut(s) 418
BamHI GGATCC 1 cut(s) 1076
BbsI GAAGAC 1 cut(s) 1222
BbvCI CCTCAGC 1 cut(s) 860
BbvI GCAGC 2 cut(s) 250, 713
BccI CCATC 3 cut(s) 47, 859, 1309
BcgI CGANNNNNNTGC 4 cut(s) 77, 88, 111, 122
BciVI GTATCC 1 cut(s) 21
BclI TGATCA 2 cut(s) 612, 1095
BcoDI GTCTC 3 cut(s) 601, 1283, 1373
BfaI CTAG 4 cut(s) 207, 557, 1001, 1269
BfmI CTRYAG 3 cut(s) 768, 925, 1044
BfoI RGCGCY 1 cut(s) 1142
BfuAI ACCTGC 1 cut(s) 1037
BfuI GTATCC 1 cut(s) 21
BisI GCNGC 3 cut(s) 264, 702, 857
BlsI GCNGC 3 cut(s) 265, 703, 858
BmiI GGNNCC 2 cut(s) 966, 1078
BmsI GCATC 5 cut(s) 212, 351, 520, 960, 1165
BpiI GAAGAC 1 cut(s) 1222
Bpu10I CCTNAGC 1 cut(s) 860
Bsa29I ATCGAT 1 cut(s) 1020
BsaAI YACGTR 1 cut(s) 102
BsaHI GRCGYC 1 cut(s) 1292
BsaJI CCNNGG 2 cut(s) 368, 836
BsaXI ACNNNNNCTCC 2 cut(s) 213, 243
Bse1I ACTGG 1 cut(s) 1179
Bse3DI GCAATG 1 cut(s) 453
BseCI ATCGAT 1 cut(s) 1020
BseDI CCNNGG 2 cut(s) 368, 836
BseGI GGATG 2 cut(s) 289, 366
BseMI GCAATG 1 cut(s) 453
BseMII CTCAG 5 cut(s) 35, 851, 983, 1156, 1368
BseNI ACTGG 1 cut(s) 1179
BseXI GCAGC 2 cut(s) 250, 713
BseYI CCCAGC 2 cut(s) 179, 251
BsgI GTGCAG 1 cut(s) 402
Bsh1236I CGCG 2 cut(s) 86, 856
BshFI GGCC 3 cut(s) 418, 525, 999
BshVI ATCGAT 1 cut(s) 1020
BsiWI CGTACG 1 cut(s) 870
BslFI GGGAC 2 cut(s) 560, 1431
BsmAI GTCTC 3 cut(s) 601, 1283, 1373
BsmBI CGTCTC 2 cut(s) 1283, 1373
BsmFI GGGAC 2 cut(s) 560, 1431
BsnI GGCC 3 cut(s) 418, 525, 999
Bsp143I GATC 7 cut(s) 612, 763, 810, 1017, 1033, 1076, 1095
BspACI CCGC 3 cut(s) 256, 314, 856
BspANI GGCC 3 cut(s) 418, 525, 999
BspCNI CTCAG 5 cut(s) 34, 852, 982, 1155, 1369
BspDI ATCGAT 1 cut(s) 1020
BspFNI CGCG 2 cut(s) 86, 856
BspHI TCATGA 1 cut(s) 429
BspLI GGNNCC 2 cut(s) 966, 1078
BspMAI CTGCAG 2 cut(s) 772, 1048
BspMI ACCTGC 1 cut(s) 1037
BspPI GGATC 3 cut(s) 758, 1071, 1084
BsrDI GCAATG 1 cut(s) 453
BsrI ACTGG 1 cut(s) 1179
BssECI CCNNGG 2 cut(s) 368, 836
BssMI GATC 7 cut(s) 612, 763, 810, 1017, 1033, 1076, 1095
BssNI GRCGYC 1 cut(s) 1292
BssT1I CCWWGG 2 cut(s) 368, 836
Bst4CI ACNGT 6 cut(s) 197, 454, 689, 1090, 1244, 1422
BstACI GRCGYC 1 cut(s) 1292
BstBAI YACGTR 1 cut(s) 102
BstC8I GCNNGC 1 cut(s) 535
BstDEI CTNAG 7 cut(s) 21, 860, 969, 1127, 1142, 1171, 1377
BstF5I GGATG 2 cut(s) 289, 366
BstFNI CGCG 2 cut(s) 86, 856
BstH2I RGCGCY 1 cut(s) 1142
BstHHI GCGC 2 cut(s) 88, 1141
BstKTI GATC 7 cut(s) 615, 766, 813, 1020, 1036, 1079, 1098
BstMAI GTCTC 3 cut(s) 601, 1283, 1373
BstMBI GATC 7 cut(s) 612, 763, 810, 1017, 1033, 1076, 1095
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstNSI RCATGY 1 cut(s) 20
BstSFI CTRYAG 3 cut(s) 768, 925, 1044
BstUI CGCG 2 cut(s) 86, 856
BstV1I GCAGC 2 cut(s) 250, 713
BstV2I GAAGAC 1 cut(s) 1222
BstX2I RGATCY 1 cut(s) 1076
BstXI CCANNNNNNTGG 1 cut(s) 843
BstYI RGATCY 1 cut(s) 1076
Bsu15I ATCGAT 1 cut(s) 1020
BsuI GTATCC 1 cut(s) 21
BsuRI GGCC 3 cut(s) 418, 525, 999
BsuTUI ATCGAT 1 cut(s) 1020
BtgZI GCGATG 1 cut(s) 837
BtsCI GGATG 2 cut(s) 289, 366
BtsI GCAGTG 1 cut(s) 390
BtsIMutI CAGTG 4 cut(s) 390, 694, 1086, 1240
BveI ACCTGC 1 cut(s) 1037
Cac8I GCNNGC 1 cut(s) 535
CciI TCATGA 1 cut(s) 429
CfoI GCGC 2 cut(s) 88, 1141
ClaI ATCGAT 1 cut(s) 1020
CseI GACGC 2 cut(s) 1300, 1390
Csp6I GTAC 5 cut(s) 103, 198, 230, 602, 871
CviAII CATG 5 cut(s) 17, 311, 430, 991, 1006
CviQI GTAC 5 cut(s) 103, 198, 230, 602, 871
DdeI CTNAG 7 cut(s) 21, 860, 969, 1127, 1142, 1171, 1377
DpnI GATC 7 cut(s) 614, 765, 812, 1019, 1035, 1078, 1097
DpnII GATC 7 cut(s) 612, 763, 810, 1017, 1033, 1076, 1095
DraI TTTAAA 1 cut(s) 405
DrdI GACNNNNNNGTC 1 cut(s) 71
DseDI GACNNNNNNGTC 1 cut(s) 71
EaeI YGGCCR 1 cut(s) 416
Eco130I CCWWGG 2 cut(s) 368, 836
Eco147I AGGCCT 1 cut(s) 999
Eco32I GATATC 1 cut(s) 435
EcoRV GATATC 1 cut(s) 435
EcoT14I CCWWGG 2 cut(s) 368, 836
EcoT22I ATGCAT 1 cut(s) 1372
ErhI CCWWGG 2 cut(s) 368, 836
Esp3I CGTCTC 2 cut(s) 1283, 1373
FaeI CATG 5 cut(s) 20, 314, 433, 994, 1009
FaqI GGGAC 2 cut(s) 560, 1431
FatI CATG 5 cut(s) 16, 310, 429, 990, 1005
FauNDI CATATG 1 cut(s) 325
FbaI TGATCA 2 cut(s) 612, 1095
Fnu4HI GCNGC 3 cut(s) 264, 702, 857
FokI GGATG 2 cut(s) 296, 373
Fsp4HI GCNGC 3 cut(s) 264, 702, 857
FspBI CTAG 4 cut(s) 207, 557, 1001, 1269
GlaI GCGC 2 cut(s) 87, 1140
GluI GCNGC 3 cut(s) 264, 702, 857
GsaI CCCAGC 2 cut(s) 183, 255
HaeII RGCGCY 1 cut(s) 1142
HaeIII GGCC 3 cut(s) 418, 525, 999
HgaI GACGC 2 cut(s) 1300, 1390
HhaI GCGC 2 cut(s) 88, 1141
Hin1I GRCGYC 1 cut(s) 1292
Hin1II CATG 5 cut(s) 20, 314, 433, 994, 1009
Hin6I GCGC 2 cut(s) 86, 1139
HinP1I GCGC 2 cut(s) 86, 1139
HindIII AAGCTT 1 cut(s) 351
HinfI GANTC 7 cut(s) 388, 426, 468, 573, 987, 1321, 1327
HphI GGTGA 3 cut(s) 1061, 1315, 1330
Hpy188I TCNGA 3 cut(s) 24, 1145, 1326
Hpy188III TCNNGA 5 cut(s) 281, 297, 430, 557, 594
Hpy99I CGWCG 1 cut(s) 1351
HpyAV CCTTC 3 cut(s) 682, 989, 1305
HpyCH4III ACNGT 6 cut(s) 197, 454, 689, 1090, 1244, 1422
HpyCH4IV ACGT 3 cut(s) 101, 637, 713
HpyCH4V TGCA 8 cut(s) 49, 203, 383, 446, 683, 770, 1046, 1370
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
HpyF3I CTNAG 7 cut(s) 21, 860, 969, 1127, 1142, 1171, 1377
HpySE526I ACGT 3 cut(s) 101, 637, 713
Hsp92I GRCGYC 1 cut(s) 1292
Hsp92II CATG 5 cut(s) 20, 314, 433, 994, 1009
HspAI GCGC 2 cut(s) 86, 1139
Ksp22I TGATCA 2 cut(s) 612, 1095
Kzo9I GATC 7 cut(s) 612, 763, 810, 1017, 1033, 1076, 1095
LmnI GCTCC 1 cut(s) 221
Lsp1109I GCAGC 2 cut(s) 250, 713
LweI GCATC 5 cut(s) 212, 351, 520, 960, 1165
MaeI CTAG 4 cut(s) 207, 557, 1001, 1269
MaeII ACGT 3 cut(s) 101, 637, 713
MaeIII GTNAC 3 cut(s) 191, 235, 1303
MalI GATC 7 cut(s) 614, 765, 812, 1019, 1035, 1078, 1097
MboI GATC 7 cut(s) 612, 763, 810, 1017, 1033, 1076, 1095
MboII GAAGA 8 cut(s) 152, 554, 967, 1178, 1222, 1225, 1228, 1286
MfeI CAATTG 2 cut(s) 441, 1308
MflI RGATCY 1 cut(s) 1076
MlsI TGGCCA 1 cut(s) 418
MluCI AATT 8 cut(s) 123, 275, 441, 550, 831, 841, 1277, 1308
MluNI TGGCCA 1 cut(s) 418
MlyI GAGTC 2 cut(s) 582, 996
MnlI CCTC 9 cut(s) 92, 105, 402, 643, 686, 802, 855, 978, 1139
Mox20I TGGCCA 1 cut(s) 418
Mph1103I ATGCAT 1 cut(s) 1372
MroXI GAANNNNTTC 1 cut(s) 639
MscI TGGCCA 1 cut(s) 418
MseI TTAA 6 cut(s) 404, 623, 830, 932, 1208, 1217
MslI CAYNNNNRTG 2 cut(s) 820, 1088
Msp20I TGGCCA 1 cut(s) 418
MspA1I CMGCKG 1 cut(s) 29
MunI CAATTG 2 cut(s) 441, 1308
MvnI CGCG 2 cut(s) 86, 856
MwoI GCNNNNNNNGC 1 cut(s) 26
NdeI CATATG 1 cut(s) 325
NdeII GATC 7 cut(s) 612, 763, 810, 1017, 1033, 1076, 1095
NlaIII CATG 5 cut(s) 20, 314, 433, 994, 1009
NlaIV GGNNCC 2 cut(s) 966, 1078
NmuCI GTSAC 2 cut(s) 191, 1303
NsiI ATGCAT 1 cut(s) 1372
NspI RCATGY 1 cut(s) 20
OliI CACNNNNGTG 1 cut(s) 1088
PagI TCATGA 1 cut(s) 429
PaqCI CACCTGC 1 cut(s) 1037
PceI AGGCCT 1 cut(s) 999
PdmI GAANNNNTTC 1 cut(s) 639
PfeI GAWTC 5 cut(s) 388, 426, 468, 1321, 1327
Pfl23II CGTACG 1 cut(s) 870
PkrI GCNGC 3 cut(s) 265, 703, 858
PleI GAGTC 2 cut(s) 581, 995
PpsI GAGTC 2 cut(s) 581, 995
Ppu21I YACGTR 1 cut(s) 102
Psp1406I AACGTT 1 cut(s) 637
PspFI CCCAGC 2 cut(s) 179, 251
PspLI CGTACG 1 cut(s) 870
PspN4I GGNNCC 2 cut(s) 966, 1078
PstI CTGCAG 2 cut(s) 772, 1048
PsuI RGATCY 1 cut(s) 1076
PvuII CAGCTG 1 cut(s) 29
RsaI GTAC 5 cut(s) 104, 199, 231, 603, 872
RsaNI GTAC 5 cut(s) 103, 198, 230, 602, 871
RseI CAYNNNNRTG 2 cut(s) 820, 1088
SaqAI TTAA 6 cut(s) 404, 623, 830, 932, 1208, 1217
SatI GCNGC 3 cut(s) 264, 702, 857
Sau3AI GATC 7 cut(s) 612, 763, 810, 1017, 1033, 1076, 1095
SchI GAGTC 2 cut(s) 582, 996
SfaNI GCATC 5 cut(s) 212, 351, 520, 960, 1165
SfcI CTRYAG 3 cut(s) 768, 925, 1044
SmiMI CAYNNNNRTG 2 cut(s) 820, 1088
Sse9I AATT 8 cut(s) 123, 275, 441, 550, 831, 841, 1277, 1308
SseBI AGGCCT 1 cut(s) 999
SsiI CCGC 3 cut(s) 256, 314, 856
SspI AATATT 2 cut(s) 293, 1196
SspMI CTAG 4 cut(s) 207, 557, 1001, 1269
StuI AGGCCT 1 cut(s) 999
StyI CCWWGG 2 cut(s) 368, 836
TaaI ACNGT 6 cut(s) 197, 454, 689, 1090, 1244, 1422
TaiI ACGT 3 cut(s) 104, 640, 716
TaqI TCGA 3 cut(s) 753, 1020, 1036
TasI AATT 8 cut(s) 123, 275, 441, 550, 831, 841, 1277, 1308
TauI GCSGC 1 cut(s) 859
TfiI GAWTC 5 cut(s) 388, 426, 468, 1321, 1327
Tru1I TTAA 6 cut(s) 404, 623, 830, 932, 1208, 1217
Tru9I TTAA 6 cut(s) 404, 623, 830, 932, 1208, 1217
TscAI CASTG 4 cut(s) 390, 694, 1093, 1247
TseFI GTSAC 2 cut(s) 191, 1303
TseI GCWGC 2 cut(s) 263, 701
Tsp45I GTSAC 2 cut(s) 191, 1303
TspDTI ATGAA 8 cut(s) 56, 132, 300, 345, 418, 648, 1178, 1287
TspGWI ACGGA 2 cut(s) 619, 888
TspRI CASTG 4 cut(s) 390, 694, 1093, 1247
XapI RAATTY 1 cut(s) 275
XbaI TCTAGA 1 cut(s) 556
XceI RCATGY 1 cut(s) 20
XmnI GAANNNNTTC 1 cut(s) 639
XspI CTAG 4 cut(s) 207, 557, 1001, 1269
Zsp2I ATGCAT 1 cut(s) 1372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.