Rh3BG242300

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000950
Physical Location & Seq
Forward (+)
22833492 .. 22834871
1380 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG242300.1

Sequence Viewer

Length: 1245 bp
ATGAGCGAGGGTACTGCAACTAGGGTATTCTATGGAGCTATGGTACTAATAACATTAGGCGAAGCTGGGCGGTGGGCTGCTTTGCAAGAATTTCTGGATGAACAATATTCAAGAGAACAAAATCATGCGGAACGCACATATGATGAAAACCTGGATAAGAAAGATGCTTTGTGGATGCTTCCTTGGTTTATAGGTGCAGTGATTCCTCTTTTCCTTTTAAAAACAACTTGGCCACAAATATTCATGATATCAACAATTGCAATGGCGGTTTCTTATTTAGGGTTCTTGTTGGGCTTTCGTTATTATTTCACATACAATATGACTAATACTGAACAAGGCCAAGATGCTCGCCCAGAAGAAGTCAATCATCTAGAACAAGCACCAAGAGTCCCTGAACAAACAAGGTCAGGAAATGTATGGAGACTGATAAATATATTAAGGAAAGATGAACGTTTTCTCATAGAAGCATTAGCTATATGGTTAGCCTTCCTCCTTGCATACGGTGTTGTAAATGCAGCAGGAAGCACGTTTTTTTTTCAACAAATGGATAACTTGGATAACCCTTTCGATAACTATGATCCTGCAGTCTATTTCAATGTGTTTGCCTCATTTTCAAAGTACTTGATCTCATTTCTCTGGAACTTAATTCCAAGGAAATGGAAACCATCGCGGCTGAGGATTTGGTGCGGAATGGCTTGTATTGTGCTTTGTTGTCTTGTTGCTTCGCAAGTTGAGAGCCACAGGTTAAACACTTCTTCAAATACGAGCATATTTTGGTTGGTTCCTCAGTTCTTCTTACTGGGAGTCATGGAAGGCCTAGCCATTTATGGAATGATCGATTTTCTTGTTGATCGAGTGTCTGAAGTTGATAAAGTGATGGTCGCATATTATGGATCCCACACCACTGACTTGATCATAGGTATTGGAAAAATACTTGTTGGTCTCAGTGTTTTGGCGTTCAGAGGAAGCTGGTTTGATGACAACAACTTAGATGCCAGTCATCTTGATAAATATTACAGAGCATTAACAATCTTAACTTCTGTTGTCTTCTTCTTCCACTGTTGTATCGCCTTTTACTATTACACTAAGGAAGAATTACAAGATGAGACGCCTTCATCGGTGACAGTTGAGATGGTAAATAATCAGTCACAACCAGAGCTCAACCTACCGCGGCATAATGTTGATAATGAATTTACCAAGATGCTTGATGAGACAGTTGGAGGACCATCTGATACATATGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

414

Amino Acids

47.59

Weight (kDa)

4.93

Isoelectric Point (pI)

39.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 670, 1171
AciI CCGC 7 cut(s) 70, 128, 266, 670, 687, 1169, 1171
AclI AACGTT 1 cut(s) 451
AclWI GGATC 3 cut(s) 572, 888, 901
AcoI YGGCCR 1 cut(s) 230
AcsI RAATTY 2 cut(s) 89, 1190
AcuI CTGAAG 1 cut(s) 882
AcyI GRCGYC 1 cut(s) 1109
AfaI GTAC 3 cut(s) 13, 45, 620
AgsI TTSAA 5 cut(s) 111, 539, 595, 615, 759
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 5 cut(s) 38, 65, 473, 969, 1159
AluI AGCT 5 cut(s) 38, 65, 473, 969, 1159
Alw21I GWGCWC 1 cut(s) 1161
Alw26I GTCTC 4 cut(s) 415, 947, 1100, 1205
AlwI GGATC 3 cut(s) 572, 888, 901
AoxI GGCC 3 cut(s) 230, 337, 814
ApeKI GCWGC 2 cut(s) 77, 515
ApoI RAATTY 2 cut(s) 89, 1190
Asp700I GAANNNNTTC 1 cut(s) 453
AspS9I GGNCC 1 cut(s) 1223
AsuHPI GGTGA 1 cut(s) 1132
AvaII GGWCC 1 cut(s) 1223
BaeI ACNNNNGTAYC 2 cut(s) 1048, 1081
BalI TGGCCA 1 cut(s) 232
BamHI GGATCC 1 cut(s) 893
BanII GRGCYC 1 cut(s) 1161
BbsI GAAGAC 1 cut(s) 1039
Bbv12I GWGCWC 1 cut(s) 1161
BbvCI CCTCAGC 1 cut(s) 674
BbvI GCAGC 2 cut(s) 64, 527
BccI CCATC 4 cut(s) 673, 871, 1126, 1234
BcgI CGANNNNNNTGC 1 cut(s) 30
BciT130I CCWGG 1 cut(s) 152
BclI TGATCA 1 cut(s) 912
BcoDI GTCTC 4 cut(s) 415, 947, 1100, 1205
BfaI CTAG 3 cut(s) 21, 371, 818
BfmI CTRYAG 1 cut(s) 582
BisI GCNGC 4 cut(s) 78, 516, 671, 1172
BlsI GCNGC 4 cut(s) 79, 517, 672, 1173
BmcAI AGTACT 1 cut(s) 620
Bme1390I CCNGG 1 cut(s) 152
Bme18I GGWCC 1 cut(s) 1223
BmgT120I GGNCC 1 cut(s) 1223
BmiI GGNNCC 2 cut(s) 783, 895
BmrFI CCNGG 1 cut(s) 152
BmrI ACTGGG 1 cut(s) 809
BmsI GCATC 5 cut(s) 154, 165, 334, 982, 1191
BmuI ACTGGG 1 cut(s) 809
BpiI GAAGAC 1 cut(s) 1039
Bpu10I CCTNAGC 1 cut(s) 674
Bsa29I ATCGAT 1 cut(s) 837
BsaHI GRCGYC 1 cut(s) 1109
BsaI GGTCTC 1 cut(s) 947
BsaJI CCNNGG 3 cut(s) 182, 650, 1169
BsaXI ACNNNNNCTCC 2 cut(s) 27, 57
Bse1I ACTGG 2 cut(s) 804, 996
Bse3DI GCAATG 1 cut(s) 267
BseBI CCWGG 1 cut(s) 152
BseCI ATCGAT 1 cut(s) 837
BseDI CCNNGG 3 cut(s) 182, 650, 1169
BseGI GGATG 2 cut(s) 103, 180
BseMI GCAATG 1 cut(s) 267
BseMII CTCAG 3 cut(s) 665, 800, 958
BseNI ACTGG 2 cut(s) 804, 996
BseXI GCAGC 2 cut(s) 64, 527
BseYI CCCAGC 1 cut(s) 65
BsgI GTGCAG 1 cut(s) 216
Bsh1236I CGCG 2 cut(s) 670, 1171
BshFI GGCC 3 cut(s) 232, 339, 816
BshVI ATCGAT 1 cut(s) 837
BsiHKAI GWGCWC 1 cut(s) 1161
BslFI GGGAC 1 cut(s) 374
BsmAI GTCTC 4 cut(s) 415, 947, 1100, 1205
BsmBI CGTCTC 1 cut(s) 1100
BsmFI GGGAC 1 cut(s) 374
BsnI GGCC 3 cut(s) 232, 339, 816
Bso31I GGTCTC 1 cut(s) 947
Bsp1286I GDGCHC 1 cut(s) 1161
Bsp143I GATC 6 cut(s) 577, 624, 834, 850, 893, 912
BspACI CCGC 7 cut(s) 70, 128, 266, 670, 687, 1169, 1171
BspANI GGCC 3 cut(s) 232, 339, 816
BspCNI CTCAG 3 cut(s) 666, 799, 957
BspDI ATCGAT 1 cut(s) 837
BspFNI CGCG 2 cut(s) 670, 1171
BspHI TCATGA 1 cut(s) 243
BspLI GGNNCC 2 cut(s) 783, 895
BspMAI CTGCAG 1 cut(s) 586
BspPI GGATC 3 cut(s) 572, 888, 901
BspTNI GGTCTC 1 cut(s) 947
BsrDI GCAATG 1 cut(s) 267
BsrI ACTGG 2 cut(s) 804, 996
BssECI CCNNGG 3 cut(s) 182, 650, 1169
BssMI GATC 6 cut(s) 577, 624, 834, 850, 893, 912
BssNI GRCGYC 1 cut(s) 1109
BssT1I CCWWGG 2 cut(s) 182, 650
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 4 cut(s) 503, 1061, 1126, 1216
BstACI GRCGYC 1 cut(s) 1109
BstC8I GCNNGC 1 cut(s) 349
BstDEI CTNAG 5 cut(s) 674, 786, 944, 988, 1086
BstDSI CCRYGG 1 cut(s) 1169
BstF5I GGATG 2 cut(s) 103, 180
BstFNI CGCG 2 cut(s) 670, 1171
BstKTI GATC 6 cut(s) 580, 627, 837, 853, 896, 915
BstMAI GTCTC 4 cut(s) 415, 947, 1100, 1205
BstMBI GATC 6 cut(s) 577, 624, 834, 850, 893, 912
BstNI CCWGG 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 150
BstSFI CTRYAG 1 cut(s) 582
BstUI CGCG 2 cut(s) 670, 1171
BstV1I GCAGC 2 cut(s) 64, 527
BstV2I GAAGAC 1 cut(s) 1039
BstX2I RGATCY 1 cut(s) 893
BstXI CCANNNNNNTGG 1 cut(s) 657
BstYI RGATCY 1 cut(s) 893
Bsu15I ATCGAT 1 cut(s) 837
BsuRI GGCC 3 cut(s) 232, 339, 816
BsuTUI ATCGAT 1 cut(s) 837
BtgI CCRYGG 1 cut(s) 1169
BtgZI GCGATG 1 cut(s) 651
BtsCI GGATG 2 cut(s) 103, 180
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 4 cut(s) 204, 903, 952, 1057
Cac8I GCNNGC 1 cut(s) 349
CciI TCATGA 1 cut(s) 243
Cfr13I GGNCC 1 cut(s) 1223
Cfr42I CCGCGG 1 cut(s) 1172
ClaI ATCGAT 1 cut(s) 837
CseI GACGC 1 cut(s) 1117
Csp6I GTAC 3 cut(s) 12, 44, 619
CviAII CATG 3 cut(s) 125, 244, 808
CviQI GTAC 3 cut(s) 12, 44, 619
DdeI CTNAG 5 cut(s) 674, 786, 944, 988, 1086
DpnI GATC 6 cut(s) 579, 626, 836, 852, 895, 914
DpnII GATC 6 cut(s) 577, 624, 834, 850, 893, 912
DraI TTTAAA 1 cut(s) 219
EaeI YGGCCR 1 cut(s) 230
Ecl136II GAGCTC 1 cut(s) 1159
Eco130I CCWWGG 2 cut(s) 182, 650
Eco147I AGGCCT 1 cut(s) 816
Eco24I GRGCYC 1 cut(s) 1161
Eco31I GGTCTC 1 cut(s) 947
Eco32I GATATC 1 cut(s) 249
Eco47I GGWCC 1 cut(s) 1223
Eco53kI GAGCTC 1 cut(s) 1159
Eco57I CTGAAG 1 cut(s) 882
EcoICRI GAGCTC 1 cut(s) 1159
EcoRII CCWGG 1 cut(s) 150
EcoRV GATATC 1 cut(s) 249
EcoT14I CCWWGG 2 cut(s) 182, 650
EcoT38I GRGCYC 1 cut(s) 1161
ErhI CCWWGG 2 cut(s) 182, 650
Esp3I CGTCTC 1 cut(s) 1100
FaeI CATG 3 cut(s) 128, 247, 811
FaqI GGGAC 1 cut(s) 374
FatI CATG 3 cut(s) 124, 243, 807
FauNDI CATATG 2 cut(s) 139, 1237
FbaI TGATCA 1 cut(s) 912
Fnu4HI GCNGC 4 cut(s) 78, 516, 671, 1172
FokI GGATG 2 cut(s) 110, 187
FriOI GRGCYC 1 cut(s) 1161
Fsp4HI GCNGC 4 cut(s) 78, 516, 671, 1172
FspBI CTAG 3 cut(s) 21, 371, 818
GluI GCNGC 4 cut(s) 78, 516, 671, 1172
GsaI CCCAGC 1 cut(s) 69
HaeIII GGCC 3 cut(s) 232, 339, 816
HgaI GACGC 1 cut(s) 1117
Hin1I GRCGYC 1 cut(s) 1109
Hin1II CATG 3 cut(s) 128, 247, 811
HinfI GANTC 3 cut(s) 202, 387, 804
HphI GGTGA 1 cut(s) 1132
Hpy188I TCNGA 3 cut(s) 862, 962, 1231
Hpy188III TCNNGA 7 cut(s) 95, 111, 244, 371, 408, 637, 1004
HpyAV CCTTC 3 cut(s) 496, 806, 1122
HpyCH4III ACNGT 4 cut(s) 503, 1061, 1126, 1216
HpyCH4IV ACGT 2 cut(s) 451, 527
HpyCH4V TGCA 7 cut(s) 17, 85, 197, 260, 497, 515, 584
HpyF3I CTNAG 5 cut(s) 674, 786, 944, 988, 1086
HpySE526I ACGT 2 cut(s) 451, 527
Hsp92I GRCGYC 1 cut(s) 1109
Hsp92II CATG 3 cut(s) 128, 247, 811
Ksp22I TGATCA 1 cut(s) 912
KspI CCGCGG 1 cut(s) 1172
Kzo9I GATC 6 cut(s) 577, 624, 834, 850, 893, 912
LmnI GCTCC 1 cut(s) 35
Lsp1109I GCAGC 2 cut(s) 64, 527
LweI GCATC 5 cut(s) 154, 165, 334, 982, 1191
MaeI CTAG 3 cut(s) 21, 371, 818
MaeII ACGT 2 cut(s) 451, 527
MaeIII GTNAC 2 cut(s) 1120, 1146
MalI GATC 6 cut(s) 579, 626, 836, 852, 895, 914
MboI GATC 6 cut(s) 577, 624, 834, 850, 893, 912
MboII GAAGA 7 cut(s) 368, 747, 784, 1039, 1042, 1045, 1103
MfeI CAATTG 1 cut(s) 255
MflI RGATCY 1 cut(s) 893
MhlI GDGCHC 1 cut(s) 1161
MlsI TGGCCA 1 cut(s) 232
MluCI AATT 5 cut(s) 89, 255, 645, 1094, 1190
MluNI TGGCCA 1 cut(s) 232
MlyI GAGTC 2 cut(s) 396, 813
MmeI TCCRAC 1 cut(s) 1198
MnlI CCTC 7 cut(s) 216, 500, 616, 669, 795, 956, 1214
Mox20I TGGCCA 1 cut(s) 232
MroXI GAANNNNTTC 1 cut(s) 453
MscI TGGCCA 1 cut(s) 232
MseI TTAA 6 cut(s) 218, 437, 644, 746, 1025, 1034
Msp20I TGGCCA 1 cut(s) 232
MspA1I CMGCKG 1 cut(s) 1171
MspR9I CCNGG 1 cut(s) 152
MunI CAATTG 1 cut(s) 255
MvaI CCWGG 1 cut(s) 152
MvnI CGCG 2 cut(s) 670, 1171
NdeI CATATG 2 cut(s) 139, 1237
NdeII GATC 6 cut(s) 577, 624, 834, 850, 893, 912
NlaIII CATG 3 cut(s) 128, 247, 811
NlaIV GGNNCC 2 cut(s) 783, 895
NmuCI GTSAC 2 cut(s) 1120, 1146
PagI TCATGA 1 cut(s) 243
PceI AGGCCT 1 cut(s) 816
PdmI GAANNNNTTC 1 cut(s) 453
PfeI GAWTC 1 cut(s) 202
PkrI GCNGC 4 cut(s) 79, 517, 672, 1173
PleI GAGTC 2 cut(s) 395, 812
PpsI GAGTC 2 cut(s) 395, 812
Psp124BI GAGCTC 1 cut(s) 1161
Psp1406I AACGTT 1 cut(s) 451
Psp6I CCWGG 1 cut(s) 150
PspFI CCCAGC 1 cut(s) 65
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 2 cut(s) 783, 895
PspPI GGNCC 1 cut(s) 1223
PstI CTGCAG 1 cut(s) 586
PsuI RGATCY 1 cut(s) 893
RsaI GTAC 3 cut(s) 13, 45, 620
RsaNI GTAC 3 cut(s) 12, 44, 619
SacI GAGCTC 1 cut(s) 1161
SacII CCGCGG 1 cut(s) 1172
SaqAI TTAA 6 cut(s) 218, 437, 644, 746, 1025, 1034
SatI GCNGC 4 cut(s) 78, 516, 671, 1172
Sau3AI GATC 6 cut(s) 577, 624, 834, 850, 893, 912
Sau96I GGNCC 1 cut(s) 1223
ScaI AGTACT 1 cut(s) 620
SchI GAGTC 2 cut(s) 396, 813
ScrFI CCNGG 1 cut(s) 152
SduI GDGCHC 1 cut(s) 1161
SfaNI GCATC 5 cut(s) 154, 165, 334, 982, 1191
SfcI CTRYAG 1 cut(s) 582
Sfr303I CCGCGG 1 cut(s) 1172
SgrBI CCGCGG 1 cut(s) 1172
SinI GGWCC 1 cut(s) 1223
Sse9I AATT 5 cut(s) 89, 255, 645, 1094, 1190
SseBI AGGCCT 1 cut(s) 816
SsiI CCGC 7 cut(s) 70, 128, 266, 670, 687, 1169, 1171
SspI AATATT 3 cut(s) 107, 240, 1013
SspMI CTAG 3 cut(s) 21, 371, 818
SstI GAGCTC 1 cut(s) 1161
StuI AGGCCT 1 cut(s) 816
StyD4I CCNGG 1 cut(s) 150
StyI CCWWGG 2 cut(s) 182, 650
TaaI ACNGT 4 cut(s) 503, 1061, 1126, 1216
TaiI ACGT 2 cut(s) 454, 530
TaqI TCGA 3 cut(s) 567, 837, 853
TasI AATT 5 cut(s) 89, 255, 645, 1094, 1190
TatI WGTACW 1 cut(s) 618
TauI GCSGC 2 cut(s) 673, 1174
TfiI GAWTC 1 cut(s) 202
Tru1I TTAA 6 cut(s) 218, 437, 644, 746, 1025, 1034
Tru9I TTAA 6 cut(s) 218, 437, 644, 746, 1025, 1034
TscAI CASTG 4 cut(s) 204, 910, 952, 1064
TseFI GTSAC 2 cut(s) 1120, 1146
TseI GCWGC 2 cut(s) 77, 515
Tsp45I GTSAC 2 cut(s) 1120, 1146
TspDTI ATGAA 6 cut(s) 114, 159, 232, 462, 1104, 1203
TspRI CASTG 4 cut(s) 204, 910, 952, 1064
VpaK11BI GGWCC 1 cut(s) 1223
XapI RAATTY 2 cut(s) 89, 1190
XbaI TCTAGA 1 cut(s) 370
XmnI GAANNNNTTC 1 cut(s) 453
XspI CTAG 3 cut(s) 21, 371, 818
ZrmI AGTACT 1 cut(s) 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.