Rh3AG233900

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000950
Physical Location & Seq
Reverse (-)
24110077 .. 24110447
371 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG233900.1

Sequence Viewer

Length: 309 bp
ATGGAAGGGCTAGCTGTCGGGGGATTGAATAATGGACTTGTTCTTGATCGAGTAGCTGAGCTAATTACAGCCCTTATTCTTTTGGCCTGCAGACAAAGTTGGTTTCAAGGTGACATGAAGACAAGCCGTCTCGACAAGTATTACAGATTCTTAACAATCTTAAGTCTTGTTAACTTATTGATGTGTTACACCTGTGCCACCATTTACTTCTATGCCAATGGTGGTCATGGATCACAAAGCAAAATCGTTGATGATGAGGAACTCGCCGGTGGTGGAGCCAATGGATTCATCATCGATCTCTCATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

102

Amino Acids

11.15

Weight (kDa)

4.83

Isoelectric Point (pI)

32.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 238
AflII CTTAAG 1 cut(s) 160
AgsI TTSAA 2 cut(s) 28, 107
AhdI GACNNNNNGTC 1 cut(s) 126
AluBI AGCT 3 cut(s) 14, 56, 61
AluI AGCT 3 cut(s) 14, 56, 61
Alw26I GTCTC 1 cut(s) 134
AlwI GGATC 1 cut(s) 238
AoxI GGCC 1 cut(s) 84
AsuHPI GGTGA 1 cut(s) 122
AsuNHI GCTAGC 1 cut(s) 10
BbsI GAAGAC 1 cut(s) 125
BceAI ACGGC 1 cut(s) 111
BcoDI GTCTC 1 cut(s) 134
BfaI CTAG 2 cut(s) 11, 307
BfmI CTRYAG 1 cut(s) 88
BfrI CTTAAG 1 cut(s) 160
BlpI GCTNAGC 1 cut(s) 57
BmeRI GACNNNNNGTC 1 cut(s) 126
BmiI GGNNCC 1 cut(s) 277
BmtI GCTAGC 1 cut(s) 14
BpiI GAAGAC 1 cut(s) 125
Bpu1102I GCTNAGC 1 cut(s) 57
Bsa29I ATCGAT 1 cut(s) 294
Bse118I RCCGGY 1 cut(s) 266
BseCI ATCGAT 1 cut(s) 294
BseMII CTCAG 1 cut(s) 48
BshFI GGCC 1 cut(s) 86
BshVI ATCGAT 1 cut(s) 294
BsiSI CCGG 1 cut(s) 267
BsmAI GTCTC 1 cut(s) 134
BsmBI CGTCTC 1 cut(s) 134
BsnI GGCC 1 cut(s) 86
Bsp143I GATC 3 cut(s) 46, 230, 295
Bsp1720I GCTNAGC 1 cut(s) 57
BspANI GGCC 1 cut(s) 86
BspCNI CTCAG 1 cut(s) 49
BspDI ATCGAT 1 cut(s) 294
BspLI GGNNCC 1 cut(s) 277
BspMAI CTGCAG 1 cut(s) 92
BspOI GCTAGC 1 cut(s) 14
BspPI GGATC 1 cut(s) 238
BspTI CTTAAG 1 cut(s) 160
BsrFI RCCGGY 1 cut(s) 266
BssAI RCCGGY 1 cut(s) 266
BssMI GATC 3 cut(s) 46, 230, 295
BstAFI CTTAAG 1 cut(s) 160
BstC8I GCNNGC 2 cut(s) 12, 88
BstDEI CTNAG 1 cut(s) 57
BstKTI GATC 3 cut(s) 49, 233, 298
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 3 cut(s) 46, 230, 295
BstSFI CTRYAG 1 cut(s) 88
BstV2I GAAGAC 1 cut(s) 125
Bsu15I ATCGAT 1 cut(s) 294
BsuRI GGCC 1 cut(s) 86
BsuTUI ATCGAT 1 cut(s) 294
Cac8I GCNNGC 2 cut(s) 12, 88
Cfr10I RCCGGY 1 cut(s) 266
ClaI ATCGAT 1 cut(s) 294
CviAII CATG 2 cut(s) 115, 227
CviJI RGCY 8 cut(s) 10, 14, 56, 61, 71, 86, 126, 278
CviKI_1 RGCY 8 cut(s) 10, 14, 56, 61, 71, 86, 126, 278
DdeI CTNAG 1 cut(s) 57
DpnI GATC 3 cut(s) 48, 232, 297
DpnII GATC 3 cut(s) 46, 230, 295
DriI GACNNNNNGTC 1 cut(s) 126
Eam1105I GACNNNNNGTC 1 cut(s) 126
Esp3I CGTCTC 1 cut(s) 134
FaeI CATG 2 cut(s) 118, 230
FaiI YATR 3 cut(s) 116, 213, 228
FatI CATG 2 cut(s) 114, 226
FspBI CTAG 2 cut(s) 11, 307
HaeIII GGCC 1 cut(s) 86
HapII CCGG 1 cut(s) 267
Hin1II CATG 2 cut(s) 118, 230
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 2 cut(s) 147, 285
HpaI GTTAAC 1 cut(s) 172
HpaII CCGG 1 cut(s) 267
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 1 cut(s) 172
Hpy188III TCNNGA 2 cut(s) 44, 131
Hpy8I GTNNAC 1 cut(s) 172
HpyCH4V TGCA 1 cut(s) 90
HpyF3I CTNAG 1 cut(s) 57
Hsp92II CATG 2 cut(s) 118, 230
KspAI GTTAAC 1 cut(s) 172
Kzo9I GATC 3 cut(s) 46, 230, 295
LmnI GCTCC 1 cut(s) 275
LpnPI CCDG 3 cut(s) 100, 205, 280
MaeI CTAG 2 cut(s) 11, 307
MaeIII GTNAC 2 cut(s) 110, 185
MalI GATC 3 cut(s) 48, 232, 297
MboI GATC 3 cut(s) 46, 230, 295
MboII GAAGA 1 cut(s) 130
MluCI AATT 1 cut(s) 63
MnlI CCTC 1 cut(s) 250
MseI TTAA 3 cut(s) 152, 161, 171
MspCI CTTAAG 1 cut(s) 160
MspI CCGG 1 cut(s) 267
NdeII GATC 3 cut(s) 46, 230, 295
NheI GCTAGC 1 cut(s) 10
NlaIII CATG 2 cut(s) 118, 230
NlaIV GGNNCC 1 cut(s) 277
NmuCI GTSAC 1 cut(s) 110
PfeI GAWTC 2 cut(s) 147, 285
PspN4I GGNNCC 1 cut(s) 277
PstI CTGCAG 1 cut(s) 92
SaqAI TTAA 3 cut(s) 152, 161, 171
Sau3AI GATC 3 cut(s) 46, 230, 295
SetI ASST 5 cut(s) 16, 58, 63, 112, 194
SfcI CTRYAG 1 cut(s) 88
SgrAI CRCCGGYG 1 cut(s) 266
SmlI CTYRAG 1 cut(s) 160
SmoI CTYRAG 1 cut(s) 160
Sse9I AATT 1 cut(s) 63
SspMI CTAG 2 cut(s) 11, 307
TaqI TCGA 3 cut(s) 49, 132, 294
TasI AATT 1 cut(s) 63
TfiI GAWTC 2 cut(s) 147, 285
Tru1I TTAA 3 cut(s) 152, 161, 171
Tru9I TTAA 3 cut(s) 152, 161, 171
TseFI GTSAC 1 cut(s) 110
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 2 cut(s) 131, 277
Vha464I CTTAAG 1 cut(s) 160
XspI CTAG 2 cut(s) 11, 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.