Rorug04G0185400

Protein NRT1 PTR FAMILY

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
32238867 .. 32239825
959 bp
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UTR
Exon/CDS
Intron
Rorug04G0185400.1

Sequence Viewer

Length: 363 bp
ATGAAGGGTCGCCTGAAAGAGATGAGTGAGTGGTGCAGGCAGCTGATGCGTGAAGAATATTTGGAACAAGATGAAGAACTTGAAATTGGAGTTACTCAAGATATTCCTGACATTGATGCCACTCAAGATATTTCCAATGGCTCAAGAGTGTCCATCCTTGATCTTAACAAGAGTACCAACCCAGTAACTGCCTCATTTCAGGAAATGATGATTGACAATATTGTTGTCCCTGTGGCTTCCAGTTTTGGCCTTGGAGAGGATTATAATTACTTAAGGAGATCAATCAGAGAATTTTTGACAGGGGAGGAGTTGGAGAAGCTCGCTTTAGATGTAGGTTTTTCTGATGCAAGATATTATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

120

Amino Acids

13.79

Weight (kDa)

4.29

Isoelectric Point (pI)

49.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 264
AcsI RAATTY 1 cut(s) 290
AfaI GTAC 1 cut(s) 175
AfiI CCNNNNNNNGG 1 cut(s) 256
AflII CTTAAG 1 cut(s) 271
AgsI TTSAA 1 cut(s) 83
AjuI GAANNNNNNNTTGG 2 cut(s) 69, 101
AluBI AGCT 2 cut(s) 43, 319
AluI AGCT 2 cut(s) 43, 319
AlwNI CAGNNNCTG 1 cut(s) 188
AoxI GGCC 1 cut(s) 247
ApeKI GCWGC 1 cut(s) 40
ApoI RAATTY 1 cut(s) 290
BaeI ACNNNNGTAYC 2 cut(s) 157, 190
BbvI GCAGC 1 cut(s) 52
BccI CCATC 1 cut(s) 161
BfrI CTTAAG 1 cut(s) 271
BisI GCNGC 1 cut(s) 41
BlsI GCNGC 1 cut(s) 42
BmrI ACTGGG 1 cut(s) 176
BmsI GCATC 3 cut(s) 36, 106, 334
BmuI ACTGGG 1 cut(s) 176
BpuEI CTTGAG 3 cut(s) 81, 108, 127
BsaJI CCNNGG 1 cut(s) 250
Bsc4I CCNNNNNNNGG 1 cut(s) 256
Bse1I ACTGG 2 cut(s) 182, 240
BseDI CCNNGG 1 cut(s) 250
BseGI GGATG 1 cut(s) 153
BseLI CCNNNNNNNGG 1 cut(s) 256
BseNI ACTGG 2 cut(s) 182, 240
BseRI GAGGAG 1 cut(s) 320
BseXI GCAGC 1 cut(s) 52
BsgI GTGCAG 1 cut(s) 55
BshFI GGCC 1 cut(s) 249
BslFI GGGAC 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 256
BsmFI GGGAC 1 cut(s) 212
BsnI GGCC 1 cut(s) 249
Bsp143I GATC 2 cut(s) 160, 278
BspANI GGCC 1 cut(s) 249
BspTI CTTAAG 1 cut(s) 271
BsrI ACTGG 2 cut(s) 182, 240
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 2 cut(s) 160, 278
BssT1I CCWWGG 1 cut(s) 250
BstAFI CTTAAG 1 cut(s) 271
BstAPI GCANNNNNTGC 1 cut(s) 46
BstC8I GCNNGC 2 cut(s) 38, 321
BstENI CCTNNNNNAGG 1 cut(s) 254
BstF5I GGATG 1 cut(s) 153
BstKTI GATC 2 cut(s) 163, 281
BstMBI GATC 2 cut(s) 160, 278
BstMWI GCNNNNNNNGC 1 cut(s) 46
BstV1I GCAGC 1 cut(s) 52
BsuRI GGCC 1 cut(s) 249
BtsCI GGATG 1 cut(s) 153
Cac8I GCNNGC 2 cut(s) 38, 321
CaiI CAGNNNCTG 1 cut(s) 188
Csp6I GTAC 1 cut(s) 174
CviJI RGCY 5 cut(s) 43, 141, 236, 249, 319
CviKI_1 RGCY 5 cut(s) 43, 141, 236, 249, 319
CviQI GTAC 1 cut(s) 174
DpnI GATC 2 cut(s) 162, 280
DpnII GATC 2 cut(s) 160, 278
Eco130I CCWWGG 1 cut(s) 250
EcoNI CCTNNNNNAGG 1 cut(s) 254
EcoT14I CCWWGG 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 250
FaiI YATR 2 cut(s) 264, 357
FaqI GGGAC 1 cut(s) 212
Fnu4HI GCNGC 1 cut(s) 41
FokI GGATG 1 cut(s) 140
Fsp4HI GCNGC 1 cut(s) 41
GluI GCNGC 1 cut(s) 41
HaeIII GGCC 1 cut(s) 249
Hpy188I TCNGA 2 cut(s) 287, 343
Hpy188III TCNNGA 5 cut(s) 98, 107, 125, 144, 200
HpyCH4V TGCA 2 cut(s) 36, 347
HpyF10VI GCNNNNNNNGC 1 cut(s) 46
Kzo9I GATC 2 cut(s) 160, 278
LpnPI CCDG 8 cut(s) 22, 26, 120, 185, 195, 243, 253, 285
Lsp1109I GCAGC 1 cut(s) 52
LweI GCATC 3 cut(s) 36, 106, 334
MaeIII GTNAC 2 cut(s) 91, 184
MalI GATC 2 cut(s) 162, 280
MboI GATC 2 cut(s) 160, 278
MboII GAAGA 2 cut(s) 65, 86
MluCI AATT 3 cut(s) 84, 265, 290
MmeI TCCRAC 1 cut(s) 291
MnlI CCTC 3 cut(s) 202, 250, 298
MseI TTAA 3 cut(s) 165, 272, 361
MspA1I CMGCKG 1 cut(s) 43
MspCI CTTAAG 1 cut(s) 271
MwoI GCNNNNNNNGC 1 cut(s) 46
NdeII GATC 2 cut(s) 160, 278
PkrI GCNGC 1 cut(s) 42
PsiI TTATAA 1 cut(s) 264
PstNI CAGNNNCTG 1 cut(s) 188
PvuII CAGCTG 1 cut(s) 43
RsaI GTAC 1 cut(s) 175
RsaNI GTAC 1 cut(s) 174
SaqAI TTAA 3 cut(s) 165, 272, 361
SatI GCNGC 1 cut(s) 41
Sau3AI GATC 2 cut(s) 160, 278
SetI ASST 3 cut(s) 45, 321, 337
SfaNI GCATC 3 cut(s) 36, 106, 334
SmlI CTYRAG 4 cut(s) 96, 123, 142, 271
SmoI CTYRAG 4 cut(s) 96, 123, 142, 271
Sse9I AATT 3 cut(s) 84, 265, 290
SspI AATATT 2 cut(s) 59, 220
StyI CCWWGG 1 cut(s) 250
TasI AATT 3 cut(s) 84, 265, 290
Tru1I TTAA 3 cut(s) 165, 272, 361
Tru9I TTAA 3 cut(s) 165, 272, 361
TseI GCWGC 1 cut(s) 40
TspDTI ATGAA 2 cut(s) 17, 87
Vha464I CTTAAG 1 cut(s) 271
XagI CCTNNNNNAGG 1 cut(s) 254
XapI RAATTY 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.