Rh3BG266200

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000950
Physical Location & Seq
Reverse (-)
25807146 .. 25809838
2693 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG266200.1

Sequence Viewer

Length: 1314 bp
ATGAGTCAGGATATAGCTGCTAGAGTATTCTATGGAGCTGCGGTACTTATAGCCTTAGGCGAAGCTGGACGATCTGCGAGTTTGGAAGAATTTCATGAGGATCAATGTATAAGTGAGAGGACACAAAAACCATACATAAGTGATGATGAGAAAACTCGGACTGCAGAAGCACTCTGGCACCGATGGTGGTTTTTGGGTGCAGCACTGGCATTGTTGTTGTGTATTTTTGAAAGGTATTTAATCTTCATGATCTCAGCATCTGCGATCGGGTTTTTCTCGTTCATATTCTGGCTCGGTCGTGCTTCTTACTTCATAAACAATAAAGACCTAGCCAGCAATAAAGAAGACATAAGGATACTGCATCTTGACTATCTTGAAAACATATCCACCCTCTGTCCAGTAGAACAATTGCAAGAACCAAGACTGGAGCTTTACACAGCCACAGAGATGATCCAGTATCGGCGAGCAGAACAGGCACAAGAAGGGGAGAATCTCACAGAACCCAAAGAGTGTCTCCGTCCGGCAGAAAGATTAAGAGCAAAAAAGTTTTGGACACTCAGTAAACTTAAGGAGGAAAAACTGTTTTTCATGAAGCTATTGCCTTGGTGCCCAGCCTTTTTGGTATACAGTGCGGTAGAGGCATCAGTCAACACGTTTTATATAGAACAAACAGATAACTGGAAATTTCCTGCTGCCGGAATTATTCTCATCATGTGCAAATCGTTCTCAAATTTCATCATTCCATATATTTTTCAGTTACTTGTTCCAAAGAAGTGCAGAGATGATACAGTGATGCAAATTGGCTGTGGGTTGACTTGTTGTGTGTTTTGTTGTATTGCTGCTTGGCAGGTTGAGATCCACAGGATGAGTTCAGTAAAACACGGTTCCAATATTATTAGCGTCTTTTGGTTACTTCCACAGTTCTGCCTAGCAGGCTTCATGGAAGAGCTAGCTGTCGGGGGATTGAATGGACTTGTTCTTGATCAAGTAGCTGAGGATAATAAGCTACTGACTAGGTACGGACCTCACATTATTGACTTCGTCTTGGGTATTGGAAAGCTAATTACAGCCCTTATTCTTTTGGCCTGCATACGAAGTTGGTTTCAAGGTGACATGAAGACAAGCCGTCTCGACAAGTATTACAGATTCTTAACAATCTTAAGTCTTGTTAACTTATTGATGTGTTACACCTGTGCCACCATTTACTTCTATGCCAATGGTGGTGATAGATCACAAAGCAAAATCGTTGATGATGAGGTACTCGCCGGAGGTGGCGCTAGTGGATGTGGATCCATCATCTCTCATTCTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

437

Amino Acids

49.59

Weight (kDa)

5.9

Isoelectric Point (pI)

42.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 838
AccB1I GGYRCC 2 cut(s) 177, 606
AccI GTMKAC 1 cut(s) 624
AciI CCGC 2 cut(s) 41, 632
AclWI GGATC 5 cut(s) 108, 445, 850, 1284, 1297
AcsI RAATTY 3 cut(s) 89, 683, 730
AfaI GTAC 3 cut(s) 45, 1019, 1260
AfiI CCNNNNNNNGG 1 cut(s) 695
AflII CTTAAG 2 cut(s) 566, 1159
AflIII ACRYGT 1 cut(s) 651
AgsI TTSAA 4 cut(s) 230, 377, 967, 1106
AhdI GACNNNNNGTC 1 cut(s) 1125
Alw26I GTCTC 2 cut(s) 518, 1133
AlwI GGATC 5 cut(s) 108, 445, 850, 1284, 1297
AlwNI CAGNNNCTG 1 cut(s) 260
AoxI GGCC 1 cut(s) 1083
ApeKI GCWGC 5 cut(s) 17, 38, 200, 692, 839
ApoI RAATTY 3 cut(s) 89, 683, 730
Asp700I GAANNNNTTC 1 cut(s) 90
AspLEI GCGC 1 cut(s) 1277
AspS9I GGNCC 1 cut(s) 1022
AsuHPI GGTGA 2 cut(s) 1121, 1235
AsuNHI GCTAGC 1 cut(s) 949
AvaII GGWCC 1 cut(s) 1022
AxyI CCTNAGG 1 cut(s) 55
BaeGI GKGCMC 1 cut(s) 611
BamHI GGATCC 1 cut(s) 1289
BanI GGYRCC 2 cut(s) 177, 606
BarI GAAGNNNNNNTAC 2 cut(s) 227, 259
BbsI GAAGAC 2 cut(s) 351, 1124
BbvCI CCTCAGC 1 cut(s) 993
BbvI GCAGC 5 cut(s) 4, 25, 212, 679, 826
BccI CCATC 2 cut(s) 177, 1301
BceAI ACGGC 1 cut(s) 1110
BciVI GTATCC 1 cut(s) 348
BclI TGATCA 1 cut(s) 982
BcoDI GTCTC 2 cut(s) 518, 1133
BfaI CTAG 8 cut(s) 21, 329, 929, 950, 1014, 1278, 1308, 1312
BfmI CTRYAG 1 cut(s) 162
BfoI RGCGCY 1 cut(s) 1278
BfrI CTTAAG 2 cut(s) 566, 1159
BfuAI ACCTGC 1 cut(s) 838
BfuI GTATCC 1 cut(s) 348
BglI GCCNNNNNGGC 1 cut(s) 933
BisI GCNGC 5 cut(s) 18, 39, 201, 693, 840
BlsI GCNGC 5 cut(s) 19, 40, 202, 694, 841
Bme18I GGWCC 1 cut(s) 1022
BmeRI GACNNNNNGTC 1 cut(s) 1125
BmgT120I GGNCC 1 cut(s) 1022
BmiI GGNNCC 4 cut(s) 179, 608, 886, 1291
BmsI GCATC 4 cut(s) 266, 370, 650, 783
BmtI GCTAGC 1 cut(s) 953
BpiI GAAGAC 2 cut(s) 351, 1124
BpmI CTGGAG 1 cut(s) 446
Bpu10I CCTNAGC 1 cut(s) 993
BsaBI GATNNNNATC 1 cut(s) 1288
BsaJI CCNNGG 1 cut(s) 602
BsaXI ACNNNNNCTCC 2 cut(s) 27, 57
Bsc4I CCNNNNNNNGG 1 cut(s) 695
Bse1I ACTGG 5 cut(s) 210, 398, 429, 454, 683
Bse21I CCTNAGG 1 cut(s) 55
Bse8I GATNNNNATC 1 cut(s) 1288
BseDI CCNNGG 1 cut(s) 602
BseGI GGATG 2 cut(s) 870, 1289
BseJI GATNNNNATC 1 cut(s) 1288
BseLI CCNNNNNNNGG 1 cut(s) 695
BseMII CTCAG 3 cut(s) 267, 571, 984
BseNI ACTGG 5 cut(s) 210, 398, 429, 454, 683
BseSI GKGCMC 1 cut(s) 611
BseXI GCAGC 5 cut(s) 4, 25, 212, 679, 826
BseYI CCCAGC 1 cut(s) 610
BsgI GTGCAG 2 cut(s) 219, 796
Bsh1285I CGRYCG 2 cut(s) 267, 298
BshFI GGCC 1 cut(s) 1085
BshNI GGYRCC 2 cut(s) 177, 606
BsiEI CGRYCG 2 cut(s) 267, 298
BsiSI CCGG 3 cut(s) 521, 696, 1266
BslI CCNNNNNNNGG 1 cut(s) 695
BsmAI GTCTC 2 cut(s) 518, 1133
BsmBI CGTCTC 1 cut(s) 1133
BsnI GGCC 1 cut(s) 1085
Bsp1286I GDGCHC 1 cut(s) 611
Bsp143I GATC 9 cut(s) 71, 100, 249, 264, 450, 855, 982, 1229, 1289
BspACI CCGC 2 cut(s) 41, 632
BspANI GGCC 1 cut(s) 1085
BspCNI CTCAG 3 cut(s) 266, 570, 985
BspHI TCATGA 3 cut(s) 94, 246, 588
BspLI GGNNCC 4 cut(s) 179, 608, 886, 1291
BspMAI CTGCAG 1 cut(s) 166
BspMI ACCTGC 1 cut(s) 838
BspOI GCTAGC 1 cut(s) 953
BspPI GGATC 5 cut(s) 108, 445, 850, 1284, 1297
BspQI GCTCTTC 1 cut(s) 939
BspT107I GGYRCC 2 cut(s) 177, 606
BspTI CTTAAG 2 cut(s) 566, 1159
BsrI ACTGG 5 cut(s) 210, 398, 429, 454, 683
BssECI CCNNGG 1 cut(s) 602
BssMI GATC 9 cut(s) 71, 100, 249, 264, 450, 855, 982, 1229, 1289
BssNAI GTATAC 1 cut(s) 625
BssT1I CCWWGG 1 cut(s) 602
Bst1107I GTATAC 1 cut(s) 625
Bst4CI ACNGT 5 cut(s) 582, 629, 790, 884, 921
Bst6I CTCTTC 1 cut(s) 939
BstAFI CTTAAG 2 cut(s) 566, 1159
BstC8I GCNNGC 5 cut(s) 334, 465, 934, 951, 1087
BstDEI CTNAG 4 cut(s) 55, 253, 557, 993
BstF5I GGATG 2 cut(s) 870, 1289
BstH2I RGCGCY 1 cut(s) 1278
BstHHI GCGC 1 cut(s) 1277
BstKTI GATC 9 cut(s) 74, 103, 252, 267, 453, 858, 985, 1232, 1292
BstMAI GTCTC 2 cut(s) 518, 1133
BstMBI GATC 9 cut(s) 71, 100, 249, 264, 450, 855, 982, 1229, 1289
BstMCI CGRYCG 2 cut(s) 267, 298
BstMWI GCNNNNNNNGC 4 cut(s) 206, 473, 638, 933
BstSFI CTRYAG 1 cut(s) 162
BstSLI GKGCMC 1 cut(s) 611
BstV1I GCAGC 5 cut(s) 4, 25, 212, 679, 826
BstV2I GAAGAC 2 cut(s) 351, 1124
BstX2I RGATCY 2 cut(s) 855, 1289
BstYI RGATCY 2 cut(s) 855, 1289
BstZ17I GTATAC 1 cut(s) 625
Bsu36I CCTNAGG 1 cut(s) 55
BsuI GTATCC 1 cut(s) 348
BsuRI GGCC 1 cut(s) 1085
BtsCI GGATG 2 cut(s) 870, 1289
BtsIMutI CAGTG 3 cut(s) 203, 634, 795
BveI ACCTGC 1 cut(s) 838
Cac8I GCNNGC 5 cut(s) 334, 465, 934, 951, 1087
CaiI CAGNNNCTG 1 cut(s) 260
CciI TCATGA 3 cut(s) 94, 246, 588
CfoI GCGC 1 cut(s) 1277
Cfr13I GGNCC 1 cut(s) 1022
CseI GACGC 1 cut(s) 889
Csp6I GTAC 3 cut(s) 44, 1018, 1259
CviAII CATG 6 cut(s) 95, 247, 589, 712, 940, 1114
CviQI GTAC 3 cut(s) 44, 1018, 1259
DdeI CTNAG 4 cut(s) 55, 253, 557, 993
DpnI GATC 9 cut(s) 73, 102, 251, 266, 452, 857, 984, 1231, 1291
DpnII GATC 9 cut(s) 71, 100, 249, 264, 450, 855, 982, 1229, 1289
DriI GACNNNNNGTC 1 cut(s) 1125
Eam1104I CTCTTC 1 cut(s) 939
Eam1105I GACNNNNNGTC 1 cut(s) 1125
EarI CTCTTC 1 cut(s) 939
Eco130I CCWWGG 1 cut(s) 602
Eco47I GGWCC 1 cut(s) 1022
Eco81I CCTNAGG 1 cut(s) 55
EcoT14I CCWWGG 1 cut(s) 602
ErhI CCWWGG 1 cut(s) 602
Esp3I CGTCTC 1 cut(s) 1133
FaeI CATG 6 cut(s) 98, 250, 592, 715, 943, 1117
FatI CATG 6 cut(s) 94, 246, 588, 711, 939, 1113
FbaI TGATCA 1 cut(s) 982
FblI GTMKAC 1 cut(s) 624
Fnu4HI GCNGC 5 cut(s) 18, 39, 201, 693, 840
FokI GGATG 2 cut(s) 877, 1296
Fsp4HI GCNGC 5 cut(s) 18, 39, 201, 693, 840
FspBI CTAG 8 cut(s) 21, 329, 929, 950, 1014, 1278, 1308, 1312
GlaI GCGC 1 cut(s) 1276
GluI GCNGC 5 cut(s) 18, 39, 201, 693, 840
GsaI CCCAGC 1 cut(s) 614
GsuI CTGGAG 1 cut(s) 446
HaeII RGCGCY 1 cut(s) 1278
HaeIII GGCC 1 cut(s) 1085
HapII CCGG 3 cut(s) 521, 696, 1266
HgaI GACGC 1 cut(s) 889
HhaI GCGC 1 cut(s) 1277
Hin1II CATG 6 cut(s) 98, 250, 592, 715, 943, 1117
Hin6I GCGC 1 cut(s) 1275
HinP1I GCGC 1 cut(s) 1275
HincII GTYRAC 3 cut(s) 649, 813, 1171
HindII GTYRAC 3 cut(s) 649, 813, 1171
HinfI GANTC 3 cut(s) 4, 490, 1146
HpaI GTTAAC 1 cut(s) 1171
HpaII CCGG 3 cut(s) 521, 696, 1266
HphI GGTGA 2 cut(s) 1121, 1235
Hpy166II GTNNAC 5 cut(s) 563, 625, 649, 813, 1171
Hpy188I TCNGA 1 cut(s) 159
Hpy188III TCNNGA 8 cut(s) 8, 95, 247, 365, 374, 589, 980, 1130
Hpy8I GTNNAC 5 cut(s) 563, 625, 649, 813, 1171
HpyAV CCTTC 1 cut(s) 476
HpyCH4III ACNGT 5 cut(s) 582, 629, 790, 884, 921
HpyCH4IV ACGT 1 cut(s) 653
HpyCH4V TGCA 8 cut(s) 164, 200, 361, 412, 717, 777, 796, 1089
HpyF10VI GCNNNNNNNGC 4 cut(s) 206, 473, 638, 933
HpyF3I CTNAG 4 cut(s) 55, 253, 557, 993
HpySE526I ACGT 1 cut(s) 653
Hsp92II CATG 6 cut(s) 98, 250, 592, 715, 943, 1117
HspAI GCGC 1 cut(s) 1275
Ksp22I TGATCA 1 cut(s) 982
KspAI GTTAAC 1 cut(s) 1171
Kzo9I GATC 9 cut(s) 71, 100, 249, 264, 450, 855, 982, 1229, 1289
LguI GCTCTTC 1 cut(s) 939
LmnI GCTCC 2 cut(s) 35, 427
Lsp1109I GCAGC 5 cut(s) 4, 25, 212, 679, 826
LweI GCATC 4 cut(s) 266, 370, 650, 783
MaeI CTAG 8 cut(s) 21, 329, 929, 950, 1014, 1278, 1308, 1312
MaeII ACGT 1 cut(s) 653
MaeIII GTNAC 4 cut(s) 756, 909, 1109, 1184
MalI GATC 9 cut(s) 73, 102, 251, 266, 452, 857, 984, 1231, 1291
MboI GATC 9 cut(s) 71, 100, 249, 264, 450, 855, 982, 1229, 1289
MboII GAAGA 5 cut(s) 98, 235, 356, 956, 1129
MfeI CAATTG 1 cut(s) 407
MflI RGATCY 2 cut(s) 855, 1289
MhlI GDGCHC 1 cut(s) 611
MluCI AATT 7 cut(s) 89, 407, 683, 699, 730, 798, 1062
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 9 cut(s) 91, 111, 401, 565, 631, 988, 1035, 1249, 1262
MroXI GAANNNNTTC 1 cut(s) 90
MseI TTAA 6 cut(s) 239, 533, 567, 1151, 1160, 1170
MslI CAYNNNNRTG 1 cut(s) 446
MspCI CTTAAG 2 cut(s) 566, 1159
MspI CCGG 3 cut(s) 521, 696, 1266
MunI CAATTG 1 cut(s) 407
MwoI GCNNNNNNNGC 4 cut(s) 206, 473, 638, 933
NdeII GATC 9 cut(s) 71, 100, 249, 264, 450, 855, 982, 1229, 1289
NheI GCTAGC 1 cut(s) 949
NlaIII CATG 6 cut(s) 98, 250, 592, 715, 943, 1117
NlaIV GGNNCC 4 cut(s) 179, 608, 886, 1291
NmuCI GTSAC 1 cut(s) 1109
PagI TCATGA 3 cut(s) 94, 246, 588
PciSI GCTCTTC 1 cut(s) 939
PdmI GAANNNNTTC 1 cut(s) 90
PfeI GAWTC 2 cut(s) 490, 1146
PflFI GACNNNGTC 1 cut(s) 1040
PkrI GCNGC 5 cut(s) 19, 40, 202, 694, 841
Ple19I CGATCG 1 cut(s) 267
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PspFI CCCAGC 1 cut(s) 610
PspN4I GGNNCC 4 cut(s) 179, 608, 886, 1291
PspPI GGNCC 1 cut(s) 1022
PstI CTGCAG 1 cut(s) 166
PstNI CAGNNNCTG 1 cut(s) 260
PsuI RGATCY 2 cut(s) 855, 1289
PsyI GACNNNGTC 1 cut(s) 1040
PvuI CGATCG 1 cut(s) 267
RsaI GTAC 3 cut(s) 45, 1019, 1260
RsaNI GTAC 3 cut(s) 44, 1018, 1259
RseI CAYNNNNRTG 1 cut(s) 446
SapI GCTCTTC 1 cut(s) 939
SaqAI TTAA 6 cut(s) 239, 533, 567, 1151, 1160, 1170
SatI GCNGC 5 cut(s) 18, 39, 201, 693, 840
Sau3AI GATC 9 cut(s) 71, 100, 249, 264, 450, 855, 982, 1229, 1289
Sau96I GGNCC 1 cut(s) 1022
SchI GAGTC 1 cut(s) 13
SduI GDGCHC 1 cut(s) 611
SfaNI GCATC 4 cut(s) 266, 370, 650, 783
SfcI CTRYAG 1 cut(s) 162
SinI GGWCC 1 cut(s) 1022
SmiMI CAYNNNNRTG 1 cut(s) 446
SmlI CTYRAG 2 cut(s) 566, 1159
SmoI CTYRAG 2 cut(s) 566, 1159
Sse9I AATT 7 cut(s) 89, 407, 683, 699, 730, 798, 1062
SsiI CCGC 2 cut(s) 41, 632
SspI AATATT 1 cut(s) 892
SspMI CTAG 8 cut(s) 21, 329, 929, 950, 1014, 1278, 1308, 1312
StyI CCWWGG 1 cut(s) 602
TaaI ACNGT 5 cut(s) 582, 629, 790, 884, 921
TaiI ACGT 1 cut(s) 656
TaqI TCGA 1 cut(s) 1131
TaqII GACCGA 1 cut(s) 284
TasI AATT 7 cut(s) 89, 407, 683, 699, 730, 798, 1062
TfiI GAWTC 2 cut(s) 490, 1146
Tru1I TTAA 6 cut(s) 239, 533, 567, 1151, 1160, 1170
Tru9I TTAA 6 cut(s) 239, 533, 567, 1151, 1160, 1170
TscAI CASTG 3 cut(s) 210, 634, 795
TseFI GTSAC 1 cut(s) 1109
TseI GCWGC 5 cut(s) 17, 38, 200, 692, 839
Tsp45I GTSAC 1 cut(s) 1109
TspDTI ATGAA 9 cut(s) 83, 235, 271, 301, 577, 605, 724, 928, 1130
TspGWI ACGGA 2 cut(s) 506, 1035
TspRI CASTG 3 cut(s) 210, 634, 795
Tth111I GACNNNGTC 1 cut(s) 1040
Vha464I CTTAAG 2 cut(s) 566, 1159
VpaK11BI GGWCC 1 cut(s) 1022
XapI RAATTY 3 cut(s) 89, 683, 730
XmiI GTMKAC 1 cut(s) 624
XmnI GAANNNNTTC 1 cut(s) 90
XspI CTAG 8 cut(s) 21, 329, 929, 950, 1014, 1278, 1308, 1312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.