Rmu_sc0000311.1_g000011

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000311.1
OG0000950
Physical Location & Seq
Reverse (-)
69060 .. 70722
1663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000311.1_g000011.1.cds

Sequence Viewer

Length: 1458 bp
atggtgataaacgtgcaagatggtgtatcagccatccttgtgattgtgcttgctcatatctcagatacatccatgggtcattttaagatgattgtcttcacaaatattgcatattttcttggactagttctattggcggtttctgctgggtttatgaaggatatagctgctagagtattctatggagctgcggtactaatagccttaggcgaagctggacggtctgcgagtttggaagaatttcttaaggatcaatgtataagtgagcggaaacaaaaaccagacataagtgatgatgagaaaattcgtactgcagaagtactctggcaccaatggtggtttttgggttcagtactggcactgtttttgtctgcttttgagtgggatttaatcttcatgatctcagcagttgcgattggggttttctcgttcatattctggctcggccgtgcctcttacttcataaacaataaagatccttccagcagtaaagaaggcataagaatactgccgcgtctagactatcttgaaaacctatccaccctctgtccagcagaacaattgcaagaaccaagaggggagctttacacagtcatagaggtgatcccttatcagcgagcagaacaagcacaaggaggggaaaatttcacagaccccgtagagtgtctccatcaagcagaaagagtaagagcagagaagttttggacactcgggaaacttaagcagggaaagctgtttttcatgaagctattgccttggtgcccaacctttttggtatacagtgtggtagaggcatcagtcaacacgttttatatagaacaaacagatcactggaatagttctcctgccgtaattattctcatgaatagcaaatcattctcaaacttcatcgttccatatctttttcggttacttgttccaaagaagtgcagagatgatacagtgatggaaattggctacgggttgacttgttgtgtgctttgttgcattgctgcttggcaggttgagatccacaggatgagttcagtaaaacacgggtcccatattattaccatcttttggttacttccacagttctgcgtagcgggcttcatggaagggctagctgttgggggattgaaccgtcttgttcttgatcaagtacctgaggataataagctactcactaggtacgcacctcacattattgacttcgtcttgggtattggaaagttcattacagtccttattctttgggcctgcagacaaagttggtttccaggtgccatgaagacaagccgtctggacaagtattacagattcttaacaatcttaagtattgctaacttgatgtgtcacacctgtgccaccatttacttctatgccaatggtggtgaaggatcacaaagcaaaatggttgatgatgaggtactcgccggaggtggcgccagtggatccatcatctctcattctagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

485

Amino Acids

54.44

Weight (kDa)

6.14

Isoelectric Point (pI)

38.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 991
AccB1I GGYRCC 4 cut(s) 327, 759, 1262, 1424
AccB7I CCANNNNNTGG 1 cut(s) 1059
AccBSI CCGCTC 1 cut(s) 268
AccI GTMKAC 1 cut(s) 777
AccII CGCG 1 cut(s) 514
AciI CCGC 5 cut(s) 137, 191, 268, 512, 1085
AclWI GGATC 7 cut(s) 258, 470, 598, 1003, 1387, 1428, 1441
AcoI YGGCCR 1 cut(s) 445
AcsI RAATTY 3 cut(s) 239, 303, 643
AcyI GRCGYC 1 cut(s) 1425
AfaI GTAC 7 cut(s) 195, 310, 321, 354, 1143, 1172, 1410
AfiI CCNNNNNNNGG 1 cut(s) 1059
AflII CTTAAG 3 cut(s) 245, 719, 1312
AflIII ACRYGT 1 cut(s) 804
AgsI TTSAA 2 cut(s) 530, 1120
AhdI GACNNNNNGTC 1 cut(s) 1278
AhlI ACTAGT 1 cut(s) 124
AjnI CCWGG 1 cut(s) 1258
AleI CACNNNNGTG 1 cut(s) 1341
AluBI AGCT 9 cut(s) 167, 188, 215, 583, 733, 748, 1106, 1159, 1455
AluI AGCT 9 cut(s) 167, 188, 215, 583, 733, 748, 1106, 1159, 1455
Alw26I GTCTC 1 cut(s) 671
AlwI GGATC 7 cut(s) 258, 470, 598, 1003, 1387, 1428, 1441
Ama87I CYCGRG 1 cut(s) 710
AoxI GGCC 2 cut(s) 445, 1236
ApeKI GCWGC 3 cut(s) 167, 188, 992
ApoI RAATTY 3 cut(s) 239, 303, 643
Asp700I GAANNNNTTC 1 cut(s) 240
AspLEI GCGC 1 cut(s) 1427
AspS9I GGNCC 2 cut(s) 1038, 1236
AsuHPI GGTGA 3 cut(s) 16, 613, 1385
AsuNHI GCTAGC 1 cut(s) 1102
AvaI CYCGRG 1 cut(s) 710
AvaII GGWCC 1 cut(s) 1038
AxyI CCTNAGG 2 cut(s) 205, 1146
BaeGI GKGCMC 1 cut(s) 764
BamHI GGATCC 1 cut(s) 1433
BanI GGYRCC 4 cut(s) 327, 759, 1262, 1424
BbsI GAAGAC 2 cut(s) 88, 1277
BbvI GCAGC 3 cut(s) 154, 175, 979
BccI CCATC 6 cut(s) 14, 41, 678, 940, 1061, 1445
BceAI ACGGC 3 cut(s) 432, 833, 1263
BciT130I CCWGG 1 cut(s) 1260
BclI TGATCA 1 cut(s) 1135
BcoDI GTCTC 1 cut(s) 671
BcuI ACTAGT 1 cut(s) 124
BfaI CTAG 7 cut(s) 125, 171, 518, 1103, 1167, 1452, 1456
BfmI CTRYAG 2 cut(s) 312, 1240
BfoI RGCGCY 1 cut(s) 1428
BfrI CTTAAG 3 cut(s) 245, 719, 1312
BfuAI ACCTGC 1 cut(s) 991
BisI GCNGC 4 cut(s) 168, 189, 512, 993
BlsI GCNGC 4 cut(s) 169, 190, 513, 994
BmcAI AGTACT 2 cut(s) 321, 354
Bme1390I CCNGG 1 cut(s) 1260
Bme18I GGWCC 1 cut(s) 1038
BmeRI GACNNNNNGTC 1 cut(s) 1278
BmeT110I CYCGRG 1 cut(s) 710
BmgT120I GGNCC 2 cut(s) 1038, 1236
BmiI GGNNCC 7 cut(s) 329, 761, 1039, 1040, 1264, 1426, 1435
BmrFI CCNGG 1 cut(s) 1260
BmsI GCATC 1 cut(s) 803
BmtI GCTAGC 1 cut(s) 1106
BpiI GAAGAC 2 cut(s) 88, 1277
BsaHI GRCGYC 1 cut(s) 1425
BsaJI CCNNGG 2 cut(s) 72, 755
BsaXI ACNNNNNCTCC 2 cut(s) 177, 207
Bsc4I CCNNNNNNNGG 1 cut(s) 1059
Bse1I ACTGG 3 cut(s) 360, 836, 1428
Bse21I CCTNAGG 2 cut(s) 205, 1146
Bse3DI GCAATG 1 cut(s) 987
BseBI CCWGG 1 cut(s) 1260
BseDI CCNNGG 2 cut(s) 72, 755
BseGI GGATG 3 cut(s) 33, 68, 1023
BseLI CCNNNNNNNGG 1 cut(s) 1059
BseMI GCAATG 1 cut(s) 987
BseMII CTCAG 3 cut(s) 75, 417, 1137
BseNI ACTGG 3 cut(s) 360, 836, 1428
BseSI GKGCMC 1 cut(s) 764
BseX3I CGGCCG 1 cut(s) 445
BseXI GCAGC 3 cut(s) 154, 175, 979
BseYI CCCAGC 1 cut(s) 146
BsgI GTGCAG 1 cut(s) 949
Bsh1236I CGCG 1 cut(s) 514
Bsh1285I CGRYCG 1 cut(s) 448
BshFI GGCC 2 cut(s) 447, 1238
BshNI GGYRCC 4 cut(s) 327, 759, 1262, 1424
BsiEI CGRYCG 1 cut(s) 448
BsiHKCI CYCGRG 1 cut(s) 710
BsiSI CCGG 1 cut(s) 1416
BslFI GGGAC 1 cut(s) 1024
BslI CCNNNNNNNGG 1 cut(s) 1059
BsmAI GTCTC 1 cut(s) 671
BsmFI GGGAC 1 cut(s) 1024
BsnI GGCC 2 cut(s) 447, 1238
BsoBI CYCGRG 1 cut(s) 710
Bsp1286I GDGCHC 1 cut(s) 764
Bsp143I GATC 9 cut(s) 250, 399, 475, 603, 826, 1008, 1135, 1379, 1433
Bsp19I CCATGG 1 cut(s) 72
BspACI CCGC 5 cut(s) 137, 191, 268, 512, 1085
BspANI GGCC 2 cut(s) 447, 1238
BspCNI CTCAG 3 cut(s) 74, 416, 1138
BspFNI CGCG 1 cut(s) 514
BspHI TCATGA 3 cut(s) 396, 741, 861
BspLI GGNNCC 7 cut(s) 329, 761, 1039, 1040, 1264, 1426, 1435
BspMAI CTGCAG 2 cut(s) 316, 1244
BspMI ACCTGC 1 cut(s) 991
BspOI GCTAGC 1 cut(s) 1106
BspPI GGATC 7 cut(s) 258, 470, 598, 1003, 1387, 1428, 1441
BspT107I GGYRCC 4 cut(s) 327, 759, 1262, 1424
BspTI CTTAAG 3 cut(s) 245, 719, 1312
BsrBI CCGCTC 1 cut(s) 268
BsrDI GCAATG 1 cut(s) 987
BsrI ACTGG 3 cut(s) 360, 836, 1428
BssECI CCNNGG 2 cut(s) 72, 755
BssMI GATC 9 cut(s) 250, 399, 475, 603, 826, 1008, 1135, 1379, 1433
BssNAI GTATAC 1 cut(s) 778
BssNI GRCGYC 1 cut(s) 1425
BssT1I CCWWGG 2 cut(s) 72, 755
Bst1107I GTATAC 1 cut(s) 778
Bst2UI CCWGG 1 cut(s) 1260
Bst4CI ACNGT 8 cut(s) 222, 363, 592, 782, 943, 1074, 1124, 1222
BstACI GRCGYC 1 cut(s) 1425
BstAFI CTTAAG 3 cut(s) 245, 719, 1312
BstC8I GCNNGC 5 cut(s) 51, 618, 1087, 1104, 1240
BstDEI CTNAG 4 cut(s) 61, 205, 403, 1146
BstDSI CCRYGG 1 cut(s) 72
BstF5I GGATG 3 cut(s) 33, 68, 1023
BstFNI CGCG 1 cut(s) 514
BstH2I RGCGCY 1 cut(s) 1428
BstHHI GCGC 1 cut(s) 1427
BstKTI GATC 9 cut(s) 253, 402, 478, 606, 829, 1011, 1138, 1382, 1436
BstMAI GTCTC 1 cut(s) 671
BstMBI GATC 9 cut(s) 250, 399, 475, 603, 826, 1008, 1135, 1379, 1433
BstMCI CGRYCG 1 cut(s) 448
BstMWI GCNNNNNNNGC 4 cut(s) 143, 626, 730, 1086
BstNI CCWGG 1 cut(s) 1260
BstSCI CCNGG 1 cut(s) 1258
BstSFI CTRYAG 2 cut(s) 312, 1240
BstSLI GKGCMC 1 cut(s) 764
BstUI CGCG 1 cut(s) 514
BstV1I GCAGC 3 cut(s) 154, 175, 979
BstV2I GAAGAC 2 cut(s) 88, 1277
BstX2I RGATCY 3 cut(s) 475, 1008, 1433
BstYI RGATCY 3 cut(s) 475, 1008, 1433
BstZ17I GTATAC 1 cut(s) 778
BstZI CGGCCG 1 cut(s) 445
Bsu36I CCTNAGG 2 cut(s) 205, 1146
BsuRI GGCC 2 cut(s) 447, 1238
BtgI CCRYGG 1 cut(s) 72
BtsCI GGATG 3 cut(s) 33, 68, 1023
BtsIMutI CAGTG 5 cut(s) 359, 787, 829, 948, 1435
BveI ACCTGC 1 cut(s) 991
Cac8I GCNNGC 5 cut(s) 51, 618, 1087, 1104, 1240
CciI TCATGA 3 cut(s) 396, 741, 861
CfoI GCGC 1 cut(s) 1427
Cfr13I GGNCC 2 cut(s) 1038, 1236
CseI GACGC 1 cut(s) 503
Csp6I GTAC 7 cut(s) 194, 309, 320, 353, 1142, 1171, 1409
CviAII CATG 6 cut(s) 73, 397, 742, 862, 1093, 1267
CviQI GTAC 7 cut(s) 194, 309, 320, 353, 1142, 1171, 1409
DdeI CTNAG 4 cut(s) 61, 205, 403, 1146
DinI GGCGCC 1 cut(s) 1426
DpnI GATC 9 cut(s) 252, 401, 477, 605, 828, 1010, 1137, 1381, 1435
DpnII GATC 9 cut(s) 250, 399, 475, 603, 826, 1008, 1135, 1379, 1433
DriI GACNNNNNGTC 1 cut(s) 1278
EaeI YGGCCR 1 cut(s) 445
EagI CGGCCG 1 cut(s) 445
Eam1105I GACNNNNNGTC 1 cut(s) 1278
EclXI CGGCCG 1 cut(s) 445
Eco130I CCWWGG 2 cut(s) 72, 755
Eco47I GGWCC 1 cut(s) 1038
Eco52I CGGCCG 1 cut(s) 445
Eco81I CCTNAGG 2 cut(s) 205, 1146
Eco88I CYCGRG 1 cut(s) 710
EcoO109I RGGNCCY 1 cut(s) 1038
EcoRII CCWGG 1 cut(s) 1258
EcoT14I CCWWGG 2 cut(s) 72, 755
EgeI GGCGCC 1 cut(s) 1426
EheI GGCGCC 1 cut(s) 1426
ErhI CCWWGG 2 cut(s) 72, 755
FaeI CATG 6 cut(s) 76, 400, 745, 865, 1096, 1270
FalI AAGNNNNNCTT 2 cut(s) 228, 260
FaqI GGGAC 1 cut(s) 1024
FatI CATG 6 cut(s) 72, 396, 741, 861, 1092, 1266
FauI CCCGC 1 cut(s) 1078
FbaI TGATCA 1 cut(s) 1135
FblI GTMKAC 1 cut(s) 777
Fnu4HI GCNGC 4 cut(s) 168, 189, 512, 993
FokI GGATG 3 cut(s) 20, 55, 1030
Fsp4HI GCNGC 4 cut(s) 168, 189, 512, 993
FspBI CTAG 7 cut(s) 125, 171, 518, 1103, 1167, 1452, 1456
GlaI GCGC 1 cut(s) 1426
GluI GCNGC 4 cut(s) 168, 189, 512, 993
GsaI CCCAGC 1 cut(s) 150
HaeII RGCGCY 1 cut(s) 1428
HaeIII GGCC 2 cut(s) 447, 1238
HapII CCGG 1 cut(s) 1416
HgaI GACGC 1 cut(s) 503
HhaI GCGC 1 cut(s) 1427
Hin1I GRCGYC 1 cut(s) 1425
Hin1II CATG 6 cut(s) 76, 400, 745, 865, 1096, 1270
Hin6I GCGC 1 cut(s) 1425
HinP1I GCGC 1 cut(s) 1425
HincII GTYRAC 2 cut(s) 802, 966
HindII GTYRAC 2 cut(s) 802, 966
HinfI GANTC 1 cut(s) 1299
HpaII CCGG 1 cut(s) 1416
HphI GGTGA 3 cut(s) 16, 613, 1385
Hpy166II GTNNAC 3 cut(s) 778, 802, 966
Hpy188I TCNGA 1 cut(s) 64
Hpy188III TCNNGA 8 cut(s) 397, 518, 527, 712, 742, 862, 1133, 1283
Hpy8I GTNNAC 3 cut(s) 778, 802, 966
HpyAV CCTTC 5 cut(s) 151, 488, 489, 1091, 1370
HpyCH4III ACNGT 8 cut(s) 222, 363, 592, 782, 943, 1074, 1124, 1222
HpyCH4IV ACGT 2 cut(s) 12, 806
HpyCH4V TGCA 7 cut(s) 16, 110, 314, 565, 930, 987, 1242
HpyF10VI GCNNNNNNNGC 4 cut(s) 143, 626, 730, 1086
HpyF3I CTNAG 4 cut(s) 61, 205, 403, 1146
HpySE526I ACGT 2 cut(s) 12, 806
Hsp92I GRCGYC 1 cut(s) 1425
Hsp92II CATG 6 cut(s) 76, 400, 745, 865, 1096, 1270
HspAI GCGC 1 cut(s) 1425
KasI GGCGCC 1 cut(s) 1424
KflI GGGWCCC 1 cut(s) 1038
Ksp22I TGATCA 1 cut(s) 1135
Kzo9I GATC 9 cut(s) 250, 399, 475, 603, 826, 1008, 1135, 1379, 1433
LmnI GCTCC 2 cut(s) 185, 580
Lsp1109I GCAGC 3 cut(s) 154, 175, 979
LweI GCATC 1 cut(s) 803
MaeI CTAG 7 cut(s) 125, 171, 518, 1103, 1167, 1452, 1456
MaeII ACGT 2 cut(s) 12, 806
MaeIII GTNAC 3 cut(s) 909, 1062, 1334
MalI GATC 9 cut(s) 252, 401, 477, 605, 828, 1010, 1137, 1381, 1435
MbiI CCGCTC 1 cut(s) 268
MboI GATC 9 cut(s) 250, 399, 475, 603, 826, 1008, 1135, 1379, 1433
MboII GAAGA 4 cut(s) 88, 248, 385, 1282
MfeI CAATTG 1 cut(s) 560
MflI RGATCY 3 cut(s) 475, 1008, 1433
MhlI GDGCHC 1 cut(s) 764
MluCI AATT 6 cut(s) 239, 303, 560, 643, 852, 951
Mly113I GGCGCC 1 cut(s) 1425
MroXI GAANNNNTTC 1 cut(s) 240
MseI TTAA 6 cut(s) 84, 246, 389, 720, 1304, 1313
MslI CAYNNNNRTG 3 cut(s) 38, 599, 1341
MspCI CTTAAG 3 cut(s) 245, 719, 1312
MspI CCGG 1 cut(s) 1416
MspR9I CCNGG 1 cut(s) 1260
MunI CAATTG 1 cut(s) 560
MvaI CCWGG 1 cut(s) 1260
MvnI CGCG 1 cut(s) 514
MwoI GCNNNNNNNGC 4 cut(s) 143, 626, 730, 1086
NarI GGCGCC 1 cut(s) 1425
NcoI CCATGG 1 cut(s) 72
NdeII GATC 9 cut(s) 250, 399, 475, 603, 826, 1008, 1135, 1379, 1433
NheI GCTAGC 1 cut(s) 1102
NlaIII CATG 6 cut(s) 76, 400, 745, 865, 1096, 1270
NlaIV GGNNCC 7 cut(s) 329, 761, 1039, 1040, 1264, 1426, 1435
NmeAIII GCCGAG 1 cut(s) 423
NmuCI GTSAC 1 cut(s) 1334
OliI CACNNNNGTG 1 cut(s) 1341
PagI TCATGA 3 cut(s) 396, 741, 861
PdmI GAANNNNTTC 1 cut(s) 240
PfeI GAWTC 1 cut(s) 1299
PflFI GACNNNGTC 1 cut(s) 1193
PflMI CCANNNNNTGG 1 cut(s) 1059
PkrI GCNGC 4 cut(s) 169, 190, 513, 994
PluTI GGCGCC 1 cut(s) 1428
PpuMI RGGWCCY 1 cut(s) 1038
Psp5II RGGWCCY 1 cut(s) 1038
Psp6I CCWGG 1 cut(s) 1258
PspFI CCCAGC 1 cut(s) 146
PspGI CCWGG 1 cut(s) 1258
PspN4I GGNNCC 7 cut(s) 329, 761, 1039, 1040, 1264, 1426, 1435
PspPI GGNCC 2 cut(s) 1038, 1236
PspPPI RGGWCCY 1 cut(s) 1038
PstI CTGCAG 2 cut(s) 316, 1244
PsuI RGATCY 3 cut(s) 475, 1008, 1433
PsyI GACNNNGTC 1 cut(s) 1193
RsaI GTAC 7 cut(s) 195, 310, 321, 354, 1143, 1172, 1410
RsaNI GTAC 7 cut(s) 194, 309, 320, 353, 1142, 1171, 1409
RseI CAYNNNNRTG 3 cut(s) 38, 599, 1341
SaqAI TTAA 6 cut(s) 84, 246, 389, 720, 1304, 1313
SatI GCNGC 4 cut(s) 168, 189, 512, 993
Sau3AI GATC 9 cut(s) 250, 399, 475, 603, 826, 1008, 1135, 1379, 1433
Sau96I GGNCC 2 cut(s) 1038, 1236
ScaI AGTACT 2 cut(s) 321, 354
ScrFI CCNGG 1 cut(s) 1260
SduI GDGCHC 1 cut(s) 764
SfaNI GCATC 1 cut(s) 803
SfcI CTRYAG 2 cut(s) 312, 1240
SfoI GGCGCC 1 cut(s) 1426
SinI GGWCC 1 cut(s) 1038
SmiMI CAYNNNNRTG 3 cut(s) 38, 599, 1341
SmlI CTYRAG 3 cut(s) 245, 719, 1312
SmoI CTYRAG 3 cut(s) 245, 719, 1312
SpeI ACTAGT 1 cut(s) 124
Sse9I AATT 6 cut(s) 239, 303, 560, 643, 852, 951
SsiI CCGC 5 cut(s) 137, 191, 268, 512, 1085
SspDI GGCGCC 1 cut(s) 1424
SspI AATATT 1 cut(s) 106
SspMI CTAG 7 cut(s) 125, 171, 518, 1103, 1167, 1452, 1456
StyD4I CCNGG 1 cut(s) 1258
StyI CCWWGG 2 cut(s) 72, 755
TaaI ACNGT 8 cut(s) 222, 363, 592, 782, 943, 1074, 1124, 1222
TaiI ACGT 2 cut(s) 15, 809
TasI AATT 6 cut(s) 239, 303, 560, 643, 852, 951
TatI WGTACW 2 cut(s) 319, 352
TauI GCSGC 1 cut(s) 514
TfiI GAWTC 1 cut(s) 1299
Tru1I TTAA 6 cut(s) 84, 246, 389, 720, 1304, 1313
Tru9I TTAA 6 cut(s) 84, 246, 389, 720, 1304, 1313
TscAI CASTG 5 cut(s) 366, 787, 836, 948, 1435
TseFI GTSAC 1 cut(s) 1334
TseI GCWGC 3 cut(s) 167, 188, 992
Tsp45I GTSAC 1 cut(s) 1334
TspRI CASTG 5 cut(s) 366, 787, 836, 948, 1435
Tth111I GACNNNGTC 1 cut(s) 1193
Van91I CCANNNNNTGG 1 cut(s) 1059
Vha464I CTTAAG 3 cut(s) 245, 719, 1312
VpaK11BI GGWCC 1 cut(s) 1038
XapI RAATTY 3 cut(s) 239, 303, 643
XbaI TCTAGA 1 cut(s) 517
XmiI GTMKAC 1 cut(s) 777
XmnI GAANNNNTTC 1 cut(s) 240
XspI CTAG 7 cut(s) 125, 171, 518, 1103, 1167, 1452, 1456
ZrmI AGTACT 2 cut(s) 321, 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.