Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000932.1

Orthogroup ID

OG0000950

Physical Location & Seq

Genomic Coordinates Reverse (-)

18197 .. 19411

Gene Structure 1215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000932.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

atggtactagtaacattaggcgaagctgggcggtgggctgctttgcgagaatttctggatgaacaatattcaagagaacaaaatcatgaggaacgcacatatgatgaaaataaggataagaaagaagctttgtggatgcttccttggtttttaggtgcagtgtttcctcttttccttttaaaaacaacttggccacaaagattcatgatatcaacaattgcaatgacggtttcttatttaggattcttgttgggctttccctattatttcacatacaatatgactaatactgaacaaggccaagatgctcgcccagaagaagtcaattatctagaacaagcaccaagagtccctgaaccaacaaggtcaggaaatgtatggagactgataaatatattaaggaaaggtgaacgttttctcatagaagcattagctatatggttagccttcctccttgcatacagtgttgtaaaggcagcaggaagcacgtttttttttcaacaaatggataacttggataaccctttcgataactatgatcctgcagtctatttcaatgtgtttgcctcattttcaaagtacttgatctcatttctctggaacttaattccaaggaaatggaaaccatcgcggctgaggatttggtgcggaatggcttgtattgtgctttgttgtcttgttgcttcgcaagttgagagccacaggttaaacacttcttcaaatacgagcatcttttggttggttcctcagttcttcttactgggagtcatggaaggcctagccatgtatggaatgatcgattttcttgttgatcgagtgtctgaaggtgataaagtaatggtcgcatattatggatcccacaccactgagttgatcataggtattggaaaaatacttgttggtcttagtgttttggcgctcagaggaagctggtttgatgacaacaacttagatgccagtcatcttcaaaaatattacagagcattaacaaccttaacttctgttgtcttcttcttccactgttgtatcgccttttactattacactagggaagaattacaagatgagacgccttcatcggtgacaattgagatggtgaatcagaatcagccacagatagacccgtcgccacataaccctgataatgcatttactgagacgcttgatgacagagttgggttatcttatttattgggacagtttgtgggtcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

404

Amino Acids

46.66

Weight (kDa)

5.12

Isoelectric Point (pI)

41.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000950)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18590
malus_domestica	MD13G1165300.v1.1 MD13G1165400.v1.1
prunus_persica	Prupe.1G124400_v2.0.a1 Prupe.1G124400_v2.0.a1 Prupe.1G124400_v2.0.a1 Prupe.1G124600_v2.0.a1 Prupe.1G124900_v2.0.a1 Prupe.1G125000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0477071 RchiOBHm_Chr3g0477161 RchiOBHm_Chr4g0387871 RchiOBHm_Chr4g0405251 RchiOBHm_Chr4g0422731
rosa_laevigata	RLG00000007575 RLG00000007576 RLG00000010048 RLG00000023495
rosa_multiflora	Rmu_sc0000288.1_g000003 Rmu_sc0000311.1_g000011 Rmu_sc0000932.1_g000003 Rmu_sc0002038.1_g000019 Rmu_sc0002509.1_g000023 Rmu_sc0010329.1_g000001 Rmu_sc0012115.1_g000003
rosa_roxburghii	Rroxscaffold_5G00334470 Rroxscaffold_5G00349590 Rroxscaffold_5G00365230 Rroxscaffold_5G00365400 Rroxscaffold_6G00401580 Rroxscaffold_6G00404380 Rroxscaffold_6G00404870
rosa_rugosa	Rorug03G0182100.1 Rorug04G0185200 Rorug04G0185300 Rorug04G0185400
rosa_samantha	Rh3AG208700 Rh3AG233900 Rh3AG234000 Rh3BG241900 Rh3BG242300 Rh3BG266200 Rh3CG236300 Rh3CG236400 Rh3CG263900 Rh3DG235200 Rh3DG259300 Rh4AG019100 Rh4AG130000 Rh4AG241000 Rh4AG244600 Rh4AG245300 Rh4BG124300 Rh4BG244300 Rh4BG249800 Rh4BG250500 Rh4CG255100 Rh4DG123600 Rh4DG239700 Rh4DG244900
rosa_wichuraiana	Rw3G019030 Rw3G021020 Rw4G010520 Rw4G021070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	631
AciI	CCGC	3 cut(s)	31, 631, 648
AclI	AACGTT	1 cut(s)	412
AclWI	GGATC	3 cut(s)	533, 849, 862
AcoI	YGGCCR	1 cut(s)	191
AcsI	RAATTY	1 cut(s)	50
AcuI	CTGAAG	1 cut(s)	843
AcyI	GRCGYC	1 cut(s)	1070
AfaI	GTAC	2 cut(s)	6, 581
AgsI	TTSAA	6 cut(s)	72, 500, 556, 576, 720, 968
AhlI	ACTAGT	1 cut(s)	7
AluBI	AGCT	4 cut(s)	26, 128, 434, 930
AluI	AGCT	4 cut(s)	26, 128, 434, 930
Alw26I	GTCTC	3 cut(s)	376, 1061, 1151
AlwI	GGATC	3 cut(s)	533, 849, 862
AoxI	GGCC	3 cut(s)	191, 298, 775
ApeKI	GCWGC	2 cut(s)	38, 476
ApoI	RAATTY	1 cut(s)	50
Asp700I	GAANNNNTTC	1 cut(s)	414
AspLEI	GCGC	1 cut(s)	919
AsuHPI	GGTGA	4 cut(s)	419, 839, 1093, 1108
BaeI	ACNNNNGTAYC	2 cut(s)	1009, 1042
BalI	TGGCCA	1 cut(s)	193
BamHI	GGATCC	1 cut(s)	854
BbsI	GAAGAC	1 cut(s)	1000
BbvCI	CCTCAGC	1 cut(s)	635
BbvI	GCAGC	2 cut(s)	25, 488
BccI	CCATC	2 cut(s)	634, 1087
BclI	TGATCA	1 cut(s)	873
BcoDI	GTCTC	3 cut(s)	376, 1061, 1151
BcuI	ACTAGT	1 cut(s)	7
BfaI	CTAG	4 cut(s)	8, 332, 779, 1047
BfmI	CTRYAG	1 cut(s)	543
BfoI	RGCGCY	1 cut(s)	920
BisI	GCNGC	3 cut(s)	39, 477, 632
BlsI	GCNGC	3 cut(s)	40, 478, 633
BmcAI	AGTACT	1 cut(s)	581
BmiI	GGNNCC	2 cut(s)	744, 856
BmrI	ACTGGG	1 cut(s)	770
BmsI	GCATC	4 cut(s)	126, 295, 738, 943
BmuI	ACTGGG	1 cut(s)	770
BpiI	GAAGAC	1 cut(s)	1000
Bpu10I	CCTNAGC	1 cut(s)	635
Bsa29I	ATCGAT	1 cut(s)	798
BsaHI	GRCGYC	1 cut(s)	1070
BsaJI	CCNNGG	2 cut(s)	143, 611
Bse1I	ACTGG	2 cut(s)	765, 957
Bse3DI	GCAATG	1 cut(s)	228
BseCI	ATCGAT	1 cut(s)	798
BseDI	CCNNGG	2 cut(s)	143, 611
BseGI	GGATG	2 cut(s)	64, 141
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	5 cut(s)	626, 761, 858, 934, 1146
BseNI	ACTGG	2 cut(s)	765, 957
BseXI	GCAGC	2 cut(s)	25, 488
BseYI	CCCAGC	1 cut(s)	26
BsgI	GTGCAG	1 cut(s)	177
Bsh1236I	CGCG	1 cut(s)	631
BshFI	GGCC	3 cut(s)	193, 300, 777
BshVI	ATCGAT	1 cut(s)	798
BslFI	GGGAC	2 cut(s)	335, 1209
BsmAI	GTCTC	3 cut(s)	376, 1061, 1151
BsmBI	CGTCTC	2 cut(s)	1061, 1151
BsmFI	GGGAC	2 cut(s)	335, 1209
BsnI	GGCC	3 cut(s)	193, 300, 777
Bsp143I	GATC	6 cut(s)	538, 585, 795, 811, 854, 873
BspACI	CCGC	3 cut(s)	31, 631, 648
BspANI	GGCC	3 cut(s)	193, 300, 777
BspCNI	CTCAG	5 cut(s)	627, 760, 859, 933, 1147
BspDI	ATCGAT	1 cut(s)	798
BspFNI	CGCG	1 cut(s)	631
BspHI	TCATGA	2 cut(s)	85, 204
BspLI	GGNNCC	2 cut(s)	744, 856
BspMAI	CTGCAG	1 cut(s)	547
BspPI	GGATC	3 cut(s)	533, 849, 862
BsrDI	GCAATG	1 cut(s)	228
BsrI	ACTGG	2 cut(s)	765, 957
BssECI	CCNNGG	2 cut(s)	143, 611
BssMI	GATC	6 cut(s)	538, 585, 795, 811, 854, 873
BssNI	GRCGYC	1 cut(s)	1070
BssT1I	CCWWGG	2 cut(s)	143, 611
Bst4CI	ACNGT	4 cut(s)	229, 464, 1022, 1200
BstACI	GRCGYC	1 cut(s)	1070
BstC8I	GCNNGC	1 cut(s)	310
BstDEI	CTNAG	7 cut(s)	635, 747, 867, 905, 920, 949, 1155
BstF5I	GGATG	2 cut(s)	64, 141
BstFNI	CGCG	1 cut(s)	631
BstH2I	RGCGCY	1 cut(s)	920
BstHHI	GCGC	1 cut(s)	919
BstKTI	GATC	6 cut(s)	541, 588, 798, 814, 857, 876
BstMAI	GTCTC	3 cut(s)	376, 1061, 1151
BstMBI	GATC	6 cut(s)	538, 585, 795, 811, 854, 873
BstSFI	CTRYAG	1 cut(s)	543
BstUI	CGCG	1 cut(s)	631
BstV1I	GCAGC	2 cut(s)	25, 488
BstV2I	GAAGAC	1 cut(s)	1000
BstX2I	RGATCY	1 cut(s)	854
BstXI	CCANNNNNNTGG	1 cut(s)	618
BstYI	RGATCY	1 cut(s)	854
Bsu15I	ATCGAT	1 cut(s)	798
BsuRI	GGCC	3 cut(s)	193, 300, 777
BsuTUI	ATCGAT	1 cut(s)	798
BtgZI	GCGATG	1 cut(s)	612
BtsCI	GGATG	2 cut(s)	64, 141
BtsI	GCAGTG	1 cut(s)	165
BtsIMutI	CAGTG	4 cut(s)	165, 469, 864, 1018
Cac8I	GCNNGC	1 cut(s)	310
CciI	TCATGA	2 cut(s)	85, 204
CfoI	GCGC	1 cut(s)	919
ClaI	ATCGAT	1 cut(s)	798
CseI	GACGC	2 cut(s)	1078, 1168
Csp6I	GTAC	2 cut(s)	5, 580
CviAII	CATG	4 cut(s)	86, 205, 769, 784
CviQI	GTAC	2 cut(s)	5, 580
DdeI	CTNAG	7 cut(s)	635, 747, 867, 905, 920, 949, 1155
DpnI	GATC	6 cut(s)	540, 587, 797, 813, 856, 875
DpnII	GATC	6 cut(s)	538, 585, 795, 811, 854, 873
DraI	TTTAAA	1 cut(s)	180
EaeI	YGGCCR	1 cut(s)	191
Eco130I	CCWWGG	2 cut(s)	143, 611
Eco147I	AGGCCT	1 cut(s)	777
Eco32I	GATATC	1 cut(s)	210
Eco57I	CTGAAG	1 cut(s)	843
EcoRV	GATATC	1 cut(s)	210
EcoT14I	CCWWGG	2 cut(s)	143, 611
EcoT22I	ATGCAT	1 cut(s)	1150
ErhI	CCWWGG	2 cut(s)	143, 611
Esp3I	CGTCTC	2 cut(s)	1061, 1151
FaeI	CATG	4 cut(s)	89, 208, 772, 787
FaqI	GGGAC	2 cut(s)	335, 1209
FatI	CATG	4 cut(s)	85, 204, 768, 783
FauNDI	CATATG	1 cut(s)	100
FbaI	TGATCA	1 cut(s)	873
Fnu4HI	GCNGC	3 cut(s)	39, 477, 632
FokI	GGATG	2 cut(s)	71, 148
Fsp4HI	GCNGC	3 cut(s)	39, 477, 632
FspBI	CTAG	4 cut(s)	8, 332, 779, 1047
GlaI	GCGC	1 cut(s)	918
GluI	GCNGC	3 cut(s)	39, 477, 632
GsaI	CCCAGC	1 cut(s)	30
HaeII	RGCGCY	1 cut(s)	920
HaeIII	GGCC	3 cut(s)	193, 300, 777
HgaI	GACGC	2 cut(s)	1078, 1168
HhaI	GCGC	1 cut(s)	919
Hin1I	GRCGYC	1 cut(s)	1070
Hin1II	CATG	4 cut(s)	89, 208, 772, 787
Hin6I	GCGC	1 cut(s)	917
HinP1I	GCGC	1 cut(s)	917
HindIII	AAGCTT	1 cut(s)	126
HinfI	GANTC	6 cut(s)	201, 243, 348, 765, 1099, 1105
HphI	GGTGA	4 cut(s)	419, 839, 1093, 1108
Hpy166II	GTNNAC	1 cut(s)	410
Hpy188I	TCNGA	3 cut(s)	823, 923, 1104
Hpy188III	TCNNGA	7 cut(s)	56, 72, 86, 205, 332, 369, 598
Hpy8I	GTNNAC	1 cut(s)	410
Hpy99I	CGWCG	1 cut(s)	1129
HpyAV	CCTTC	4 cut(s)	457, 767, 818, 1083
HpyCH4III	ACNGT	4 cut(s)	229, 464, 1022, 1200
HpyCH4IV	ACGT	2 cut(s)	412, 488
HpyCH4V	TGCA	5 cut(s)	158, 221, 458, 545, 1148
HpyF3I	CTNAG	7 cut(s)	635, 747, 867, 905, 920, 949, 1155
HpySE526I	ACGT	2 cut(s)	412, 488
Hsp92I	GRCGYC	1 cut(s)	1070
Hsp92II	CATG	4 cut(s)	89, 208, 772, 787
HspAI	GCGC	1 cut(s)	917
Ksp22I	TGATCA	1 cut(s)	873
Kzo9I	GATC	6 cut(s)	538, 585, 795, 811, 854, 873
Lsp1109I	GCAGC	2 cut(s)	25, 488
LweI	GCATC	4 cut(s)	126, 295, 738, 943
MaeI	CTAG	4 cut(s)	8, 332, 779, 1047
MaeII	ACGT	2 cut(s)	412, 488
MaeIII	GTNAC	2 cut(s)	10, 1081
MalI	GATC	6 cut(s)	540, 587, 797, 813, 856, 875
MboI	GATC	6 cut(s)	538, 585, 795, 811, 854, 873
MboII	GAAGA	8 cut(s)	329, 708, 745, 956, 1000, 1003, 1006, 1064
MfeI	CAATTG	2 cut(s)	216, 1086
MflI	RGATCY	1 cut(s)	854
MlsI	TGGCCA	1 cut(s)	193
MluCI	AATT	6 cut(s)	50, 216, 325, 606, 1055, 1086
MluNI	TGGCCA	1 cut(s)	193
MlyI	GAGTC	2 cut(s)	357, 774
MnlI	CCTC	7 cut(s)	82, 177, 461, 577, 630, 756, 917
Mox20I	TGGCCA	1 cut(s)	193
Mph1103I	ATGCAT	1 cut(s)	1150
MroXI	GAANNNNTTC	1 cut(s)	414
MscI	TGGCCA	1 cut(s)	193
MseI	TTAA	6 cut(s)	179, 398, 605, 707, 986, 995
Msp20I	TGGCCA	1 cut(s)	193
MunI	CAATTG	2 cut(s)	216, 1086
MvnI	CGCG	1 cut(s)	631
NdeI	CATATG	1 cut(s)	100
NdeII	GATC	6 cut(s)	538, 585, 795, 811, 854, 873
NlaIII	CATG	4 cut(s)	89, 208, 772, 787
NlaIV	GGNNCC	2 cut(s)	744, 856
NmuCI	GTSAC	1 cut(s)	1081
NsiI	ATGCAT	1 cut(s)	1150
PagI	TCATGA	2 cut(s)	85, 204
PceI	AGGCCT	1 cut(s)	777
PdmI	GAANNNNTTC	1 cut(s)	414
PfeI	GAWTC	4 cut(s)	201, 243, 1099, 1105
PkrI	GCNGC	3 cut(s)	40, 478, 633
PleI	GAGTC	2 cut(s)	356, 773
PpsI	GAGTC	2 cut(s)	356, 773
Psp1406I	AACGTT	1 cut(s)	412
PspFI	CCCAGC	1 cut(s)	26
PspN4I	GGNNCC	2 cut(s)	744, 856
PstI	CTGCAG	1 cut(s)	547
PsuI	RGATCY	1 cut(s)	854
RsaI	GTAC	2 cut(s)	6, 581
RsaNI	GTAC	2 cut(s)	5, 580
SaqAI	TTAA	6 cut(s)	179, 398, 605, 707, 986, 995
SatI	GCNGC	3 cut(s)	39, 477, 632
Sau3AI	GATC	6 cut(s)	538, 585, 795, 811, 854, 873
ScaI	AGTACT	1 cut(s)	581
SchI	GAGTC	2 cut(s)	357, 774
SfaNI	GCATC	4 cut(s)	126, 295, 738, 943
SfcI	CTRYAG	1 cut(s)	543
SpeI	ACTAGT	1 cut(s)	7
Sse9I	AATT	6 cut(s)	50, 216, 325, 606, 1055, 1086
SseBI	AGGCCT	1 cut(s)	777
SsiI	CCGC	3 cut(s)	31, 631, 648
SspI	AATATT	2 cut(s)	68, 974
SspMI	CTAG	4 cut(s)	8, 332, 779, 1047
StuI	AGGCCT	1 cut(s)	777
StyI	CCWWGG	2 cut(s)	143, 611
TaaI	ACNGT	4 cut(s)	229, 464, 1022, 1200
TaiI	ACGT	2 cut(s)	415, 491
TaqI	TCGA	3 cut(s)	528, 798, 814
TasI	AATT	6 cut(s)	50, 216, 325, 606, 1055, 1086
TatI	WGTACW	1 cut(s)	579
TauI	GCSGC	1 cut(s)	634
TfiI	GAWTC	4 cut(s)	201, 243, 1099, 1105
Tru1I	TTAA	6 cut(s)	179, 398, 605, 707, 986, 995
Tru9I	TTAA	6 cut(s)	179, 398, 605, 707, 986, 995
TscAI	CASTG	4 cut(s)	165, 469, 871, 1025
TseFI	GTSAC	1 cut(s)	1081
TseI	GCWGC	2 cut(s)	38, 476
Tsp45I	GTSAC	1 cut(s)	1081
TspDTI	ATGAA	4 cut(s)	75, 120, 193, 1065
TspRI	CASTG	4 cut(s)	165, 469, 871, 1025
XapI	RAATTY	1 cut(s)	50
XbaI	TCTAGA	1 cut(s)	331
XmnI	GAANNNNTTC	1 cut(s)	414
XspI	CTAG	4 cut(s)	8, 332, 779, 1047
ZrmI	AGTACT	1 cut(s)	581
Zsp2I	ATGCAT	1 cut(s)	1150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.