Rh4DG244900

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000950
Physical Location & Seq
Reverse (-)
45703279 .. 45715896
12618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG244900.1

Sequence Viewer

Length: 1608 bp
ATGCAACTAAATTGCCCATCAAATGATAATTATCAGCTGGCTGCTGTAGCTATAAATATGCTAGATGGGGTATCATCCATCATGGTGTGTGTCCTTGCTTTAATCTCAAACAGGGTCGGTCCTTTTAAGGTGATTGCCACCACGAATGCTGCCTATATTCTTGGCCTGGTTCTATTGTGGAGTTCATTTAATTATGCGGGCCGGAAAGCCAATGCATCTGATAAAGTATTCTACGGAGCTGGCCTACTGTTAGCATTAGGCGAGGCTGGACGGCCGGCTGCTTTGGGTAAATTTCTGGACGACCAATATTTAAGTGAAGTTGATCACAAGATCAAATTACCCGAAACAAAAAGTATTGAAGAAGAAGATCATATTTCGACCAGAAACGAAGAACAAGAAGATCATATTTCGACCAGAAAAGAAGAGGATGACAAGCAAAAACGAGTGGAAGAGGACAAGCAAAAACGTGTGGAAACCCGTCAAACCGCTTTATGGAGCCATCCCTGGTTCATAGGTGCGGCTGCACCTCTTGCCCTTGTAAAGAGATCTTGGCAAACTCAACTACTGCTCTCAATGATCGCGGTGGGAGTTTCTTACTTATTGTTCTGGTATGGCGTCTTCGCGTATTCCAGAAATATCAGAAATGAAGTAAATGATCCAGCAGTAGAAGATGCACCAAGAGATCCTGGACTTTGCCAAGCCATCAAAAGTCTCTCACCACAAAAAAAAAGCTTGAAGTTTTGGCTCAAACCCAATTCCAGAAAACGTTATTACAAAGAAATGCTAGTCATGTGCTTAGCCTTCATCGTATACAGTCTGGTGGAGGCAACGGGGAGCACCTTCTTTTTCGATCAAATGACTCTACTGAACTATCACATCGGGAACTTTAAATTGCCCATCATATATTTCGTTATACTCCAATCCTTGTCAAGCTCCGTAATCTCATTTCTCTGGAGGTTACGTGTTCCAAATCAGTCAAAACGTGCTACGTTGGTGAGGATCGGCTGTGGTTTAGTTTGTTCTGTGCTATGTATGGTTGCTGCTTGGCAAGTTGAGATTCGTAGGAAAATTAAGATCAATACAGAATATACAGGTGACCCCCCCCAGATGGAAATTTCCATGAGCATTCTTTGGTTAATTCCACAATTCTCCCTGTTAGGGTTTATGAGAGGGTTAGCGGCAGATGGATTGATCGAGTTTTTTGCGGATCGAGTTGATGGTAATGGTAAAAGAAAGGCTAGGTATTATGGATCCTACGCCAGTGAATTAGTCCTGGGTATTGGAACATTACTAACCGCCGTTAGTATTCTCGGGTTTAGACGAACTTGGTTGGTTAATGATATATACAAGAATCGTCTGGATAAGTACTACAGGGGACTAGTATTCATAGGTGTTGCTAACCTTTGCTATTACTTCTGTGTCGCCGTTTACTTTTATACCAAGGAGGATAACTCGCAAGTAAGTTGTGCCGCAGATGGAAATGATCAAAGTGAAATGCCGGAAGAGGACAAAAAATATTATCATCACGAGGTGTCCTCAGGTGGTGCGGAGACTCCGGACTTAGAAGAAATGAAGTCGAGTTTTGATTGTTGTAGTAGTTTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

535

Amino Acids

60.57

Weight (kDa)

7.86

Isoelectric Point (pI)

46.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 253 - 403 5e-08 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 810
AccII CGCG 2 cut(s) 581, 623
AccIII TCCGGA 1 cut(s) 1555
AciI CCGC 9 cut(s) 197, 486, 518, 581, 1178, 1205, 1296, 1470, 1547
AclI AACGTT 1 cut(s) 766
AclWI GGATC 6 cut(s) 650, 677, 1007, 1215, 1245, 1258
AcoI YGGCCR 1 cut(s) 272
AcsI RAATTY 2 cut(s) 290, 1113
AcyI GRCGYC 1 cut(s) 615
AdeI CACNNNGTG 1 cut(s) 1531
AfaI GTAC 1 cut(s) 1367
AfiI CCNNNNNNNGG 3 cut(s) 492, 1108, 1158
AflIII ACRYGT 2 cut(s) 466, 961
AgsI TTSAA 2 cut(s) 359, 736
AhlI ACTAGT 1 cut(s) 1378
AjnI CCWGG 4 cut(s) 165, 503, 685, 1272
AluBI AGCT 5 cut(s) 37, 50, 239, 732, 933
AluI AGCT 5 cut(s) 37, 50, 239, 732, 933
Alw21I GWGCWC 1 cut(s) 839
Alw26I GTCTC 2 cut(s) 716, 1544
AlwI GGATC 6 cut(s) 650, 677, 1007, 1215, 1245, 1258
Ama87I CYCGRG 1 cut(s) 1310
Aor13HI TCCGGA 1 cut(s) 1555
AoxI GGCC 4 cut(s) 163, 199, 241, 272
ApeKI GCWGC 5 cut(s) 41, 149, 278, 521, 1040
ApoI RAATTY 2 cut(s) 290, 1113
AspS9I GGNCC 2 cut(s) 119, 199
AsuHPI GGTGA 4 cut(s) 142, 708, 1006, 1106
AvaI CYCGRG 1 cut(s) 1310
AvaII GGWCC 1 cut(s) 119
AxyI CCTNAGG 1 cut(s) 1537
BamHI GGATCC 1 cut(s) 1250
BarI GAAGNNNNNNTAC 2 cut(s) 602, 634
BauI CACGAG 1 cut(s) 1526
BbsI GAAGAC 1 cut(s) 610
Bbv12I GWGCWC 1 cut(s) 839
BbvI GCAGC 5 cut(s) 28, 136, 265, 508, 1027
BceAI ACGGC 3 cut(s) 287, 1283, 1409
BcgI CGANNNNNNTGC 2 cut(s) 1184, 1218
BciT130I CCWGG 4 cut(s) 167, 505, 687, 1274
BclI TGATCA 2 cut(s) 322, 1483
BcoDI GTCTC 2 cut(s) 716, 1544
BcuI ACTAGT 1 cut(s) 1378
BfaI CTAG 4 cut(s) 62, 785, 1239, 1379
BfmI CTRYAG 2 cut(s) 45, 1369
BglII AGATCT 1 cut(s) 545
BisI GCNGC 8 cut(s) 42, 150, 279, 519, 522, 1041, 1179, 1470
BlpI GCTNAGC 1 cut(s) 796
BlsI GCNGC 8 cut(s) 43, 151, 280, 520, 523, 1042, 1180, 1471
BmcAI AGTACT 1 cut(s) 1367
Bme1390I CCNGG 4 cut(s) 167, 505, 687, 1274
Bme18I GGWCC 1 cut(s) 119
BmeT110I CYCGRG 1 cut(s) 1310
BmgT120I GGNCC 2 cut(s) 119, 199
BmiI GGNNCC 2 cut(s) 497, 1252
BmrFI CCNGG 4 cut(s) 167, 505, 687, 1274
BmsI GCATC 2 cut(s) 224, 661
BpiI GAAGAC 1 cut(s) 610
BplI GAGNNNNNCTC 4 cut(s) 1436, 1468, 1520, 1552
BpmI CTGGAG 1 cut(s) 973
Bpu1102I GCTNAGC 1 cut(s) 796
BsaAI YACGTR 1 cut(s) 962
BsaBI GATNNNNATC 1 cut(s) 30
BsaHI GRCGYC 1 cut(s) 615
BsaJI CCNNGG 3 cut(s) 503, 1273, 1440
BsaWI WCCGGW 1 cut(s) 1555
BsaXI ACNNNNNCTCC 2 cut(s) 946, 976
Bsc4I CCNNNNNNNGG 3 cut(s) 492, 1108, 1158
Bse118I RCCGGY 1 cut(s) 274
Bse1I ACTGG 1 cut(s) 1260
Bse21I CCTNAGG 1 cut(s) 1537
Bse8I GATNNNNATC 1 cut(s) 30
BseAI TCCGGA 1 cut(s) 1555
BseBI CCWGG 4 cut(s) 167, 505, 687, 1274
BseDI CCNNGG 3 cut(s) 503, 1273, 1440
BseGI GGATG 3 cut(s) 74, 433, 499
BseJI GATNNNNATC 1 cut(s) 30
BseLI CCNNNNNNNGG 3 cut(s) 492, 1108, 1158
BseMII CTCAG 1 cut(s) 1551
BseNI ACTGG 1 cut(s) 1260
BseX3I CGGCCG 1 cut(s) 272
BseXI GCAGC 5 cut(s) 28, 136, 265, 508, 1027
BsgI GTGCAG 1 cut(s) 507
Bsh1236I CGCG 2 cut(s) 581, 623
Bsh1285I CGRYCG 1 cut(s) 275
BshFI GGCC 4 cut(s) 165, 201, 243, 274
BsiEI CGRYCG 1 cut(s) 275
BsiHKAI GWGCWC 1 cut(s) 839
BsiHKCI CYCGRG 1 cut(s) 1310
BsiSI CCGG 4 cut(s) 202, 275, 1499, 1556
BslFI GGGAC 1 cut(s) 1389
BslI CCNNNNNNNGG 3 cut(s) 492, 1108, 1158
BsmAI GTCTC 2 cut(s) 716, 1544
BsmFI GGGAC 1 cut(s) 1389
BsmI GAATGC 2 cut(s) 151, 1125
BsnI GGCC 4 cut(s) 165, 201, 243, 274
BsoBI CYCGRG 1 cut(s) 1310
Bsp1286I GDGCHC 1 cut(s) 839
Bsp13I TCCGGA 1 cut(s) 1555
Bsp1720I GCTNAGC 1 cut(s) 796
BspACI CCGC 9 cut(s) 197, 486, 518, 581, 1178, 1205, 1296, 1470, 1547
BspANI GGCC 4 cut(s) 165, 201, 243, 274
BspCNI CTCAG 1 cut(s) 1550
BspEI TCCGGA 1 cut(s) 1555
BspFNI CGCG 2 cut(s) 581, 623
BspLI GGNNCC 2 cut(s) 497, 1252
BspPI GGATC 6 cut(s) 650, 677, 1007, 1215, 1245, 1258
BsrFI RCCGGY 1 cut(s) 274
BsrI ACTGG 1 cut(s) 1260
BssAI RCCGGY 1 cut(s) 274
BssECI CCNNGG 3 cut(s) 503, 1273, 1440
BssNAI GTATAC 1 cut(s) 811
BssNI GRCGYC 1 cut(s) 615
BssSI CACGAG 1 cut(s) 1526
BssT1I CCWWGG 1 cut(s) 1440
Bst1107I GTATAC 1 cut(s) 811
Bst2BI CACGAG 1 cut(s) 1526
Bst2UI CCWGG 4 cut(s) 167, 505, 687, 1274
Bst4CI ACNGT 2 cut(s) 249, 815
Bst6I CTCTTC 3 cut(s) 417, 444, 1497
BstACI GRCGYC 1 cut(s) 615
BstAPI GCANNNNNTGC 1 cut(s) 530
BstBAI YACGTR 1 cut(s) 962
BstC8I GCNNGC 4 cut(s) 39, 199, 241, 276
BstDEI CTNAG 3 cut(s) 796, 1537, 1561
BstEII GGTNACC 1 cut(s) 1094
BstF5I GGATG 3 cut(s) 74, 433, 499
BstFNI CGCG 2 cut(s) 581, 623
BstMAI GTCTC 2 cut(s) 716, 1544
BstMCI CGRYCG 1 cut(s) 275
BstMWI GCNNNNNNNGC 2 cut(s) 47, 530
BstNI CCWGG 4 cut(s) 167, 505, 687, 1274
BstPI GGTNACC 1 cut(s) 1094
BstSCI CCNGG 4 cut(s) 165, 503, 685, 1272
BstSFI CTRYAG 2 cut(s) 45, 1369
BstUI CGCG 2 cut(s) 581, 623
BstV1I GCAGC 5 cut(s) 28, 136, 265, 508, 1027
BstV2I GAAGAC 1 cut(s) 610
BstX2I RGATCY 3 cut(s) 545, 682, 1250
BstYI RGATCY 3 cut(s) 545, 682, 1250
BstZ17I GTATAC 1 cut(s) 811
BstZI CGGCCG 1 cut(s) 272
Bsu36I CCTNAGG 1 cut(s) 1537
BsuRI GGCC 4 cut(s) 165, 201, 243, 274
BtsCI GGATG 3 cut(s) 74, 433, 499
BtsIMutI CAGTG 1 cut(s) 1267
Cac8I GCNNGC 4 cut(s) 39, 199, 241, 276
Cfr10I RCCGGY 1 cut(s) 274
Cfr13I GGNCC 2 cut(s) 119, 199
CseI GACGC 1 cut(s) 604
Csp6I GTAC 1 cut(s) 1366
CviAII CATG 3 cut(s) 82, 790, 1120
CviQI GTAC 1 cut(s) 1366
DdeI CTNAG 3 cut(s) 796, 1537, 1561
DraI TTTAAA 1 cut(s) 889
DraIII CACNNNGTG 1 cut(s) 1531
EaeI YGGCCR 1 cut(s) 272
EagI CGGCCG 1 cut(s) 272
Eam1104I CTCTTC 3 cut(s) 417, 444, 1497
EarI CTCTTC 3 cut(s) 417, 444, 1497
EclXI CGGCCG 1 cut(s) 272
Eco130I CCWWGG 1 cut(s) 1440
Eco47I GGWCC 1 cut(s) 119
Eco52I CGGCCG 1 cut(s) 272
Eco81I CCTNAGG 1 cut(s) 1537
Eco88I CYCGRG 1 cut(s) 1310
Eco91I GGTNACC 1 cut(s) 1094
EcoO65I GGTNACC 1 cut(s) 1094
EcoRII CCWGG 4 cut(s) 165, 503, 685, 1272
EcoT14I CCWWGG 1 cut(s) 1440
EcoT22I ATGCAT 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 1440
FaeI CATG 3 cut(s) 85, 793, 1123
FaqI GGGAC 1 cut(s) 1389
FatI CATG 3 cut(s) 81, 789, 1119
FauI CCCGC 1 cut(s) 190
FbaI TGATCA 2 cut(s) 322, 1483
FblI GTMKAC 1 cut(s) 810
Fnu4HI GCNGC 8 cut(s) 42, 150, 279, 519, 522, 1041, 1179, 1470
FokI GGATG 3 cut(s) 61, 440, 486
Fsp4HI GCNGC 8 cut(s) 42, 150, 279, 519, 522, 1041, 1179, 1470
FspBI CTAG 4 cut(s) 62, 785, 1239, 1379
GluI GCNGC 8 cut(s) 42, 150, 279, 519, 522, 1041, 1179, 1470
GsuI CTGGAG 1 cut(s) 973
HaeIII GGCC 4 cut(s) 165, 201, 243, 274
HapII CCGG 4 cut(s) 202, 275, 1499, 1556
HgaI GACGC 1 cut(s) 604
Hin1I GRCGYC 1 cut(s) 615
Hin1II CATG 3 cut(s) 85, 793, 1123
HindIII AAGCTT 1 cut(s) 730
HinfI GANTC 4 cut(s) 859, 1057, 1351, 1552
HpaII CCGG 4 cut(s) 202, 275, 1499, 1556
HphI GGTGA 4 cut(s) 142, 708, 1006, 1106
Hpy166II GTNNAC 2 cut(s) 811, 1429
Hpy188I TCNGA 2 cut(s) 220, 641
Hpy188III TCNNGA 8 cut(s) 296, 630, 759, 880, 952, 1358, 1526, 1556
Hpy8I GTNNAC 2 cut(s) 811, 1429
HpyAV CCTTC 2 cut(s) 811, 850
HpyCH4III ACNGT 2 cut(s) 249, 815
HpyCH4IV ACGT 5 cut(s) 466, 766, 961, 982, 989
HpyCH4V TGCA 4 cut(s) 4, 215, 524, 674
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 530
HpyF3I CTNAG 3 cut(s) 796, 1537, 1561
HpySE526I ACGT 5 cut(s) 466, 766, 961, 982, 989
Hsp92I GRCGYC 1 cut(s) 615
Hsp92II CATG 3 cut(s) 85, 793, 1123
Kpn2I TCCGGA 1 cut(s) 1555
KroI GCCGGC 1 cut(s) 274
KroNI GCCGGC 1 cut(s) 276
Ksp22I TGATCA 2 cut(s) 322, 1483
LmnI GCTCC 4 cut(s) 236, 495, 834, 938
Lsp1109I GCAGC 5 cut(s) 28, 136, 265, 508, 1027
LweI GCATC 2 cut(s) 224, 661
MaeI CTAG 4 cut(s) 62, 785, 1239, 1379
MaeII ACGT 5 cut(s) 466, 766, 961, 982, 989
MaeIII GTNAC 2 cut(s) 957, 1094
MflI RGATCY 3 cut(s) 545, 682, 1250
MhlI GDGCHC 1 cut(s) 839
MlyI GAGTC 2 cut(s) 853, 1546
Mph1103I ATGCAT 1 cut(s) 217
MroI TCCGGA 1 cut(s) 1555
MroNI GCCGGC 1 cut(s) 274
MseI TTAA 8 cut(s) 101, 126, 189, 311, 888, 1071, 1136, 1335
MslI CAYNNNNRTG 1 cut(s) 83
MspA1I CMGCKG 1 cut(s) 37
MspI CCGG 4 cut(s) 202, 275, 1499, 1556
MspR9I CCNGG 4 cut(s) 167, 505, 687, 1274
Mva1269I GAATGC 2 cut(s) 151, 1125
MvaI CCWGG 4 cut(s) 167, 505, 687, 1274
MvnI CGCG 2 cut(s) 581, 623
MwoI GCNNNNNNNGC 2 cut(s) 47, 530
NaeI GCCGGC 1 cut(s) 276
NgoMIV GCCGGC 1 cut(s) 274
NlaIII CATG 3 cut(s) 85, 793, 1123
NlaIV GGNNCC 2 cut(s) 497, 1252
NmuCI GTSAC 1 cut(s) 1094
NsiI ATGCAT 1 cut(s) 217
PctI GAATGC 2 cut(s) 151, 1125
PdiI GCCGGC 1 cut(s) 276
PfeI GAWTC 2 cut(s) 1057, 1351
PfoI TCCNGGA 1 cut(s) 685
PkrI GCNGC 8 cut(s) 43, 151, 280, 520, 523, 1042, 1180, 1471
PleI GAGTC 2 cut(s) 853, 1546
PpsI GAGTC 2 cut(s) 853, 1546
Ppu21I YACGTR 1 cut(s) 962
Psp1406I AACGTT 1 cut(s) 766
Psp6I CCWGG 4 cut(s) 165, 503, 685, 1272
PspEI GGTNACC 1 cut(s) 1094
PspGI CCWGG 4 cut(s) 165, 503, 685, 1272
PspN4I GGNNCC 2 cut(s) 497, 1252
PspPI GGNCC 2 cut(s) 119, 199
PsuI RGATCY 3 cut(s) 545, 682, 1250
PvuII CAGCTG 1 cut(s) 37
RsaI GTAC 1 cut(s) 1367
RsaNI GTAC 1 cut(s) 1366
RseI CAYNNNNRTG 1 cut(s) 83
SaqAI TTAA 8 cut(s) 101, 126, 189, 311, 888, 1071, 1136, 1335
SatI GCNGC 8 cut(s) 42, 150, 279, 519, 522, 1041, 1179, 1470
Sau96I GGNCC 2 cut(s) 119, 199
ScaI AGTACT 1 cut(s) 1367
SchI GAGTC 2 cut(s) 853, 1546
ScrFI CCNGG 4 cut(s) 167, 505, 687, 1274
SduI GDGCHC 1 cut(s) 839
SfaNI GCATC 2 cut(s) 224, 661
SfcI CTRYAG 2 cut(s) 45, 1369
SinI GGWCC 1 cut(s) 119
SmiMI CAYNNNNRTG 1 cut(s) 83
SpeI ACTAGT 1 cut(s) 1378
SsiI CCGC 9 cut(s) 197, 486, 518, 581, 1178, 1205, 1296, 1470, 1547
SspI AATATT 2 cut(s) 308, 1517
SspMI CTAG 4 cut(s) 62, 785, 1239, 1379
StyD4I CCNGG 4 cut(s) 165, 503, 685, 1272
StyI CCWWGG 1 cut(s) 1440
TaaI ACNGT 2 cut(s) 249, 815
TaiI ACGT 5 cut(s) 469, 769, 964, 985, 992
TaqI TCGA 6 cut(s) 377, 410, 849, 1194, 1210, 1577
TaqII GACCGA 1 cut(s) 107
TatI WGTACW 1 cut(s) 1365
TauI GCSGC 3 cut(s) 521, 1181, 1472
TfiI GAWTC 2 cut(s) 1057, 1351
Tru1I TTAA 8 cut(s) 101, 126, 189, 311, 888, 1071, 1136, 1335
Tru9I TTAA 8 cut(s) 101, 126, 189, 311, 888, 1071, 1136, 1335
TscAI CASTG 1 cut(s) 1267
TseFI GTSAC 1 cut(s) 1094
TseI GCWGC 5 cut(s) 41, 149, 278, 521, 1040
Tsp45I GTSAC 1 cut(s) 1094
TspDTI ATGAA 6 cut(s) 174, 499, 660, 793, 1375, 1586
TspGWI ACGGA 2 cut(s) 249, 925
TspRI CASTG 1 cut(s) 1267
VpaK11BI GGWCC 1 cut(s) 119
XapI RAATTY 2 cut(s) 290, 1113
XmiI GTMKAC 1 cut(s) 810
XspI CTAG 4 cut(s) 62, 785, 1239, 1379
ZrmI AGTACT 1 cut(s) 1367
Zsp2I ATGCAT 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.