Rroxscaffold_6G00404380

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000950
Physical Location & Seq
Reverse (-)
26901820 .. 26909264
7445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00404380.1

Sequence Viewer

Length: 1146 bp
ATGAACAATATTCAAGAGAACAAAATCATGCGGAACGCACATGATGAAAACCTGGATAAGAAAGATGCTTTGTGGATGCTTCCTTGGTTTATAGGTGCAGTGATTCCTCTTTTCCTTTTAAAAACAACTTGGCCACAAATATTCATGATATCAACAATTGCAATGGCGGTTTCTTATTTAGGGTTCTTGTTGGGCTTTCCTTATTATTTCACATACAATATGACTAATACTGAACAAGGTCAAGATGCTCGCCCAGAAGAAGTCAATCATCTAGAACAAGCACCAAGAGTCCCTGAACAAACAAGGTCAGGAAATGTATGGAGACTGATAAATATATTAAGGAAAGATGAACGTTTTCTCATAGAAGTATTAGCTATATGGTTAGCCTTCCTCCTTGCATACAGTGTTGTAAAGGCAGCAGGAAGCACGTTTTTTTTTCAACAAATGGATAACTTGGATAACCCTTTCGATAACTATGATCCTGCAGTCTATTTCAATGTGTTTGCCTCATTTTCAAAGTACTTGATCTCATTTCTCTGGAACTTAATTCCAAGGAAATGGAAACCATCGCGGCTGAGGATTTGGTGCGGAATGGCTTGTATTGTGCTTTGTTGTCTTGTTGCTTCGCAAGTTGAGAGCCACAGGTTAAACACTTCTTCAAATACGAGCATCTTTTGGTTGGTTCCTCAGTTCTTCTTACTAGGAGTCATGGAAGGCCTAGCCATGTATGGAATGATCGGTTTTCTTGTTGATCGAGTGTCTGAAGTTGATAAAGTAATGGTCGCATATTATGGATCCCACACCACTGGCTTGATCATAGGTATTGGAAAAATACTTGTTGGTCTCAGTGTTTTGGCGTTCAGAGGAAGCTGGTTTGATGACAACAACTTAGATGCCAGTCATCTTGATAAATATTACAGAGCATTAACAATCTTAACTTCTGTTGTCTTCTTCTTCCACTGTTGTATCGCCTTTTGCTATTACACTAGGGAAGAATTACAAGATGAGACGCCTTCATCGGTGACAATTGAGATGGTAAATAATCAGTCACAACCAGAGCTCAACCTGCCGCGGCATAATGTTGATAATGAATTTACCAAGATGCTTGTTGAGACAGTTGGAGGACAATCTCATACATATGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

381

Amino Acids

43.84

Weight (kDa)

5.64

Isoelectric Point (pI)

40.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1074
AccII CGCG 2 cut(s) 571, 1072
AciI CCGC 6 cut(s) 31, 167, 571, 588, 1070, 1072
AclI AACGTT 1 cut(s) 352
AclWI GGATC 3 cut(s) 473, 789, 802
AcoI YGGCCR 1 cut(s) 131
AcsI RAATTY 1 cut(s) 1091
AcuI CTGAAG 1 cut(s) 783
AcyI GRCGYC 1 cut(s) 1010
AfaI GTAC 1 cut(s) 521
AgsI TTSAA 5 cut(s) 14, 440, 496, 516, 660
AjnI CCWGG 1 cut(s) 51
AluBI AGCT 3 cut(s) 374, 870, 1060
AluI AGCT 3 cut(s) 374, 870, 1060
Alw21I GWGCWC 1 cut(s) 1062
Alw26I GTCTC 4 cut(s) 316, 848, 1001, 1106
AlwI GGATC 3 cut(s) 473, 789, 802
AoxI GGCC 2 cut(s) 131, 715
ApeKI GCWGC 1 cut(s) 416
ApoI RAATTY 1 cut(s) 1091
Asp700I GAANNNNTTC 1 cut(s) 354
AsuHPI GGTGA 1 cut(s) 1033
BaeI ACNNNNGTAYC 2 cut(s) 949, 982
BalI TGGCCA 1 cut(s) 133
BamHI GGATCC 1 cut(s) 794
BanII GRGCYC 1 cut(s) 1062
BbsI GAAGAC 1 cut(s) 940
Bbv12I GWGCWC 1 cut(s) 1062
BbvCI CCTCAGC 1 cut(s) 575
BbvI GCAGC 1 cut(s) 428
BccI CCATC 2 cut(s) 574, 1027
BciT130I CCWGG 1 cut(s) 53
BclI TGATCA 1 cut(s) 813
BcoDI GTCTC 4 cut(s) 316, 848, 1001, 1106
BfaI CTAG 4 cut(s) 272, 701, 719, 987
BfmI CTRYAG 1 cut(s) 483
BfuAI ACCTGC 1 cut(s) 1074
BisI GCNGC 4 cut(s) 417, 572, 1070, 1073
BlsI GCNGC 4 cut(s) 418, 573, 1071, 1074
BmcAI AGTACT 1 cut(s) 521
Bme1390I CCNGG 1 cut(s) 53
BmiI GGNNCC 2 cut(s) 684, 796
BmrFI CCNGG 1 cut(s) 53
BmsI GCATC 6 cut(s) 55, 66, 235, 678, 883, 1092
BpiI GAAGAC 1 cut(s) 940
Bpu10I CCTNAGC 1 cut(s) 575
BsaHI GRCGYC 1 cut(s) 1010
BsaI GGTCTC 1 cut(s) 848
BsaJI CCNNGG 3 cut(s) 83, 551, 1070
Bse1I ACTGG 2 cut(s) 811, 897
Bse3DI GCAATG 1 cut(s) 168
BseBI CCWGG 1 cut(s) 53
BseDI CCNNGG 3 cut(s) 83, 551, 1070
BseGI GGATG 1 cut(s) 81
BseMI GCAATG 1 cut(s) 168
BseMII CTCAG 3 cut(s) 566, 701, 859
BseNI ACTGG 2 cut(s) 811, 897
BseXI GCAGC 1 cut(s) 428
BsgI GTGCAG 1 cut(s) 117
Bsh1236I CGCG 2 cut(s) 571, 1072
BshFI GGCC 2 cut(s) 133, 717
BsiHKAI GWGCWC 1 cut(s) 1062
BslFI GGGAC 1 cut(s) 275
BsmAI GTCTC 4 cut(s) 316, 848, 1001, 1106
BsmBI CGTCTC 1 cut(s) 1001
BsmFI GGGAC 1 cut(s) 275
BsnI GGCC 2 cut(s) 133, 717
Bso31I GGTCTC 1 cut(s) 848
Bsp1286I GDGCHC 1 cut(s) 1062
Bsp143I GATC 6 cut(s) 478, 525, 735, 751, 794, 813
BspACI CCGC 6 cut(s) 31, 167, 571, 588, 1070, 1072
BspANI GGCC 2 cut(s) 133, 717
BspCNI CTCAG 3 cut(s) 567, 700, 858
BspFNI CGCG 2 cut(s) 571, 1072
BspHI TCATGA 1 cut(s) 144
BspLI GGNNCC 2 cut(s) 684, 796
BspMAI CTGCAG 1 cut(s) 487
BspMI ACCTGC 1 cut(s) 1074
BspPI GGATC 3 cut(s) 473, 789, 802
BspTNI GGTCTC 1 cut(s) 848
BsrDI GCAATG 1 cut(s) 168
BsrI ACTGG 2 cut(s) 811, 897
BssECI CCNNGG 3 cut(s) 83, 551, 1070
BssMI GATC 6 cut(s) 478, 525, 735, 751, 794, 813
BssNI GRCGYC 1 cut(s) 1010
BssT1I CCWWGG 2 cut(s) 83, 551
Bst2UI CCWGG 1 cut(s) 53
Bst4CI ACNGT 3 cut(s) 404, 962, 1117
BstACI GRCGYC 1 cut(s) 1010
BstC8I GCNNGC 1 cut(s) 250
BstDEI CTNAG 4 cut(s) 575, 687, 845, 889
BstDSI CCRYGG 1 cut(s) 1070
BstF5I GGATG 1 cut(s) 81
BstFNI CGCG 2 cut(s) 571, 1072
BstKTI GATC 6 cut(s) 481, 528, 738, 754, 797, 816
BstMAI GTCTC 4 cut(s) 316, 848, 1001, 1106
BstMBI GATC 6 cut(s) 478, 525, 735, 751, 794, 813
BstMWI GCNNNNNNNGC 1 cut(s) 1066
BstNI CCWGG 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 51
BstSFI CTRYAG 1 cut(s) 483
BstUI CGCG 2 cut(s) 571, 1072
BstV1I GCAGC 1 cut(s) 428
BstV2I GAAGAC 1 cut(s) 940
BstX2I RGATCY 1 cut(s) 794
BstXI CCANNNNNNTGG 2 cut(s) 558, 806
BstYI RGATCY 1 cut(s) 794
BsuRI GGCC 2 cut(s) 133, 717
BtgI CCRYGG 1 cut(s) 1070
BtgZI GCGATG 1 cut(s) 552
BtsCI GGATG 1 cut(s) 81
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 5 cut(s) 105, 409, 804, 853, 958
BveI ACCTGC 1 cut(s) 1074
Cac8I GCNNGC 1 cut(s) 250
CciI TCATGA 1 cut(s) 144
Cfr42I CCGCGG 1 cut(s) 1073
CseI GACGC 1 cut(s) 1018
Csp6I GTAC 1 cut(s) 520
CviAII CATG 5 cut(s) 28, 41, 145, 709, 724
CviQI GTAC 1 cut(s) 520
DdeI CTNAG 4 cut(s) 575, 687, 845, 889
DpnI GATC 6 cut(s) 480, 527, 737, 753, 796, 815
DpnII GATC 6 cut(s) 478, 525, 735, 751, 794, 813
DraI TTTAAA 1 cut(s) 120
EaeI YGGCCR 1 cut(s) 131
Ecl136II GAGCTC 1 cut(s) 1060
Eco130I CCWWGG 2 cut(s) 83, 551
Eco147I AGGCCT 1 cut(s) 717
Eco24I GRGCYC 1 cut(s) 1062
Eco31I GGTCTC 1 cut(s) 848
Eco32I GATATC 1 cut(s) 150
Eco53kI GAGCTC 1 cut(s) 1060
Eco57I CTGAAG 1 cut(s) 783
EcoICRI GAGCTC 1 cut(s) 1060
EcoRII CCWGG 1 cut(s) 51
EcoRV GATATC 1 cut(s) 150
EcoT14I CCWWGG 2 cut(s) 83, 551
EcoT38I GRGCYC 1 cut(s) 1062
ErhI CCWWGG 2 cut(s) 83, 551
Esp3I CGTCTC 1 cut(s) 1001
FaeI CATG 5 cut(s) 31, 44, 148, 712, 727
FaqI GGGAC 1 cut(s) 275
FatI CATG 5 cut(s) 27, 40, 144, 708, 723
FauNDI CATATG 1 cut(s) 1138
FbaI TGATCA 1 cut(s) 813
Fnu4HI GCNGC 4 cut(s) 417, 572, 1070, 1073
FokI GGATG 1 cut(s) 88
FriOI GRGCYC 1 cut(s) 1062
Fsp4HI GCNGC 4 cut(s) 417, 572, 1070, 1073
FspBI CTAG 4 cut(s) 272, 701, 719, 987
GluI GCNGC 4 cut(s) 417, 572, 1070, 1073
HaeIII GGCC 2 cut(s) 133, 717
HgaI GACGC 1 cut(s) 1018
Hin1I GRCGYC 1 cut(s) 1010
Hin1II CATG 5 cut(s) 31, 44, 148, 712, 727
HinfI GANTC 3 cut(s) 103, 288, 705
HphI GGTGA 1 cut(s) 1033
Hpy188I TCNGA 2 cut(s) 763, 863
Hpy188III TCNNGA 7 cut(s) 14, 145, 242, 272, 309, 538, 905
HpyAV CCTTC 3 cut(s) 397, 707, 1023
HpyCH4III ACNGT 3 cut(s) 404, 962, 1117
HpyCH4IV ACGT 2 cut(s) 352, 428
HpyCH4V TGCA 4 cut(s) 98, 161, 398, 485
HpyF10VI GCNNNNNNNGC 1 cut(s) 1066
HpyF3I CTNAG 4 cut(s) 575, 687, 845, 889
HpySE526I ACGT 2 cut(s) 352, 428
Hsp92I GRCGYC 1 cut(s) 1010
Hsp92II CATG 5 cut(s) 31, 44, 148, 712, 727
Ksp22I TGATCA 1 cut(s) 813
KspI CCGCGG 1 cut(s) 1073
Kzo9I GATC 6 cut(s) 478, 525, 735, 751, 794, 813
Lsp1109I GCAGC 1 cut(s) 428
LweI GCATC 6 cut(s) 55, 66, 235, 678, 883, 1092
MaeI CTAG 4 cut(s) 272, 701, 719, 987
MaeII ACGT 2 cut(s) 352, 428
MaeIII GTNAC 2 cut(s) 1021, 1047
MalI GATC 6 cut(s) 480, 527, 737, 753, 796, 815
MboI GATC 6 cut(s) 478, 525, 735, 751, 794, 813
MboII GAAGA 7 cut(s) 269, 648, 685, 940, 943, 946, 1004
MfeI CAATTG 2 cut(s) 156, 1026
MflI RGATCY 1 cut(s) 794
MhlI GDGCHC 1 cut(s) 1062
MlsI TGGCCA 1 cut(s) 133
MluCI AATT 5 cut(s) 156, 546, 995, 1026, 1091
MluNI TGGCCA 1 cut(s) 133
MlyI GAGTC 2 cut(s) 297, 714
MmeI TCCRAC 1 cut(s) 1099
MnlI CCTC 7 cut(s) 117, 401, 517, 570, 696, 857, 1115
Mox20I TGGCCA 1 cut(s) 133
MroXI GAANNNNTTC 1 cut(s) 354
MscI TGGCCA 1 cut(s) 133
MseI TTAA 6 cut(s) 119, 338, 545, 647, 926, 935
MslI CAYNNNNRTG 1 cut(s) 1137
Msp20I TGGCCA 1 cut(s) 133
MspA1I CMGCKG 1 cut(s) 1072
MspR9I CCNGG 1 cut(s) 53
MunI CAATTG 2 cut(s) 156, 1026
MvaI CCWGG 1 cut(s) 53
MvnI CGCG 2 cut(s) 571, 1072
MwoI GCNNNNNNNGC 1 cut(s) 1066
NdeI CATATG 1 cut(s) 1138
NdeII GATC 6 cut(s) 478, 525, 735, 751, 794, 813
NlaIII CATG 5 cut(s) 31, 44, 148, 712, 727
NlaIV GGNNCC 2 cut(s) 684, 796
NmuCI GTSAC 2 cut(s) 1021, 1047
PagI TCATGA 1 cut(s) 144
PceI AGGCCT 1 cut(s) 717
PdmI GAANNNNTTC 1 cut(s) 354
PfeI GAWTC 1 cut(s) 103
PkrI GCNGC 4 cut(s) 418, 573, 1071, 1074
PleI GAGTC 2 cut(s) 296, 713
PpsI GAGTC 2 cut(s) 296, 713
Psp124BI GAGCTC 1 cut(s) 1062
Psp1406I AACGTT 1 cut(s) 352
Psp6I CCWGG 1 cut(s) 51
PspGI CCWGG 1 cut(s) 51
PspN4I GGNNCC 2 cut(s) 684, 796
PstI CTGCAG 1 cut(s) 487
PsuI RGATCY 1 cut(s) 794
RsaI GTAC 1 cut(s) 521
RsaNI GTAC 1 cut(s) 520
RseI CAYNNNNRTG 1 cut(s) 1137
SacI GAGCTC 1 cut(s) 1062
SacII CCGCGG 1 cut(s) 1073
SaqAI TTAA 6 cut(s) 119, 338, 545, 647, 926, 935
SatI GCNGC 4 cut(s) 417, 572, 1070, 1073
Sau3AI GATC 6 cut(s) 478, 525, 735, 751, 794, 813
ScaI AGTACT 1 cut(s) 521
SchI GAGTC 2 cut(s) 297, 714
ScrFI CCNGG 1 cut(s) 53
SduI GDGCHC 1 cut(s) 1062
SfaNI GCATC 6 cut(s) 55, 66, 235, 678, 883, 1092
SfcI CTRYAG 1 cut(s) 483
Sfr303I CCGCGG 1 cut(s) 1073
SgrBI CCGCGG 1 cut(s) 1073
SmiMI CAYNNNNRTG 1 cut(s) 1137
Sse9I AATT 5 cut(s) 156, 546, 995, 1026, 1091
SseBI AGGCCT 1 cut(s) 717
SsiI CCGC 6 cut(s) 31, 167, 571, 588, 1070, 1072
SspI AATATT 3 cut(s) 10, 141, 914
SspMI CTAG 4 cut(s) 272, 701, 719, 987
SstI GAGCTC 1 cut(s) 1062
StuI AGGCCT 1 cut(s) 717
StyD4I CCNGG 1 cut(s) 51
StyI CCWWGG 2 cut(s) 83, 551
TaaI ACNGT 3 cut(s) 404, 962, 1117
TaiI ACGT 2 cut(s) 355, 431
TaqI TCGA 2 cut(s) 468, 754
TasI AATT 5 cut(s) 156, 546, 995, 1026, 1091
TatI WGTACW 1 cut(s) 519
TauI GCSGC 3 cut(s) 574, 1072, 1075
TfiI GAWTC 1 cut(s) 103
Tru1I TTAA 6 cut(s) 119, 338, 545, 647, 926, 935
Tru9I TTAA 6 cut(s) 119, 338, 545, 647, 926, 935
TscAI CASTG 5 cut(s) 105, 409, 811, 853, 965
TseFI GTSAC 2 cut(s) 1021, 1047
TseI GCWGC 1 cut(s) 416
Tsp45I GTSAC 2 cut(s) 1021, 1047
TspDTI ATGAA 6 cut(s) 17, 60, 133, 363, 1005, 1104
TspRI CASTG 5 cut(s) 105, 409, 811, 853, 965
XapI RAATTY 1 cut(s) 1091
XbaI TCTAGA 1 cut(s) 271
XmnI GAANNNNTTC 1 cut(s) 354
XspI CTAG 4 cut(s) 272, 701, 719, 987
ZrmI AGTACT 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.