Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000950

Physical Location & Seq

Genomic Coordinates Forward (+)

9860501 .. 9862264

Gene Structure 1764 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G125000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGAGAGGATTCTTCAGAGCTGAATCAATATTGAGGGTTCAAACTCTGACTCGCGCGGGGCTTCAGTGGGGTCATCGCAACATTCTTCTCTACCCATGCATTGTCTCGGTGAGAAACTGGATTGGAAACTACTACTACTTTTCCGAGGCTACTACACGCATCCGAGCTCTGGTTTGCAGCCATAGCTTCATAAACCACGCGTTAGTGAATATCTTGATAACTTACCTCACGGATAATTGGAGTACTTCACATTTTGAAATGGCTGCCCTCGTTACAAATGTCCAAGAAGGGGTATCGGGCATCATGGTGATTGTTCTTGCACAAATTTTGGATAGTCCGATTGGGTCAATCGAGTTCCTTCCATTATATTTCACAGTACTTAGGGACTTCTCAAGTTTCTTAATCTCATTTTTGTACAACTTACTGATTCCAAAGCACTGGAGAAAGGCTACGGGTACGCTTACGCTGGTGAGAATTGGCTGCGGATTGGCTTGTTCTATGCTATGTTGTGTTGCTGCTTGGCAGGTTGAGGGAAAGAGATTGAGGGCAATTAGCAATGAAGGGCTTGAAGATGACATGTCTACGACTATTCCTATGAGCATTTCGTGGTTACTTCCACAGTTCGTCCTTTTGGGAGTAATGGAAGGGCTAGCCCTAAATGGATTGACTGATTTCCTTGCTGATCGAATTGCTAATAATGATGCACTAAGGGCCACTTATTATGCATCCCACATCTCTGACCTCATCCTTGGTGTTGGAAAATTAATTACAGCTTCTACCATAATATTGTTTAGGCGAAGTTGGTTCCATCACAACATAAATGGGAGTCGCCTGGATCGTTTTTTTGAGCTATTAACTTACCTAAGTCTTGTTAACCTAATTTACTACGGGTCTTATTTGTTCTCTGGGTTTATGTTATGTAAATACGCATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

312

Amino Acids

35.21

Weight (kDa)

8.66

Isoelectric Point (pI)

36.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000950)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18590
malus_domestica	MD13G1165300.v1.1 MD13G1165400.v1.1
prunus_persica	Prupe.1G124400_v2.0.a1 Prupe.1G124400_v2.0.a1 Prupe.1G124400_v2.0.a1 Prupe.1G124600_v2.0.a1 Prupe.1G124900_v2.0.a1 Prupe.1G125000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0477071 RchiOBHm_Chr3g0477161 RchiOBHm_Chr4g0387871 RchiOBHm_Chr4g0405251 RchiOBHm_Chr4g0422731
rosa_laevigata	RLG00000007575 RLG00000007576 RLG00000010048 RLG00000023495
rosa_multiflora	Rmu_sc0000288.1_g000003 Rmu_sc0000311.1_g000011 Rmu_sc0000932.1_g000003 Rmu_sc0002038.1_g000019 Rmu_sc0002509.1_g000023 Rmu_sc0010329.1_g000001 Rmu_sc0012115.1_g000003
rosa_roxburghii	Rroxscaffold_5G00334470 Rroxscaffold_5G00349590 Rroxscaffold_5G00365230 Rroxscaffold_5G00365400 Rroxscaffold_6G00401580 Rroxscaffold_6G00404380 Rroxscaffold_6G00404870
rosa_rugosa	Rorug03G0182100.1 Rorug04G0185200 Rorug04G0185300 Rorug04G0185400
rosa_samantha	Rh3AG208700 Rh3AG233900 Rh3AG234000 Rh3BG241900 Rh3BG242300 Rh3BG266200 Rh3CG236300 Rh3CG236400 Rh3CG263900 Rh3DG235200 Rh3DG259300 Rh4AG019100 Rh4AG130000 Rh4AG241000 Rh4AG244600 Rh4AG245300 Rh4BG124300 Rh4BG244300 Rh4BG249800 Rh4BG250500 Rh4CG255100 Rh4DG123600 Rh4DG239700 Rh4DG244900
rosa_wichuraiana	Rw3G019030 Rw3G021020 Rw4G010520 Rw4G021070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	514
AccI	GTMKAC	1 cut(s)	581
AccII	CGCG	3 cut(s)	54, 56, 200
AciI	CCGC	2 cut(s)	56, 483
AclWI	GGATC	1 cut(s)	843
AcsI	RAATTY	1 cut(s)	324
AcuI	CTGAAG	1 cut(s)	47
AfaI	GTAC	4 cut(s)	244, 378, 416, 457
AfiI	CCNNNNNNNGG	2 cut(s)	169, 289
AflIII	ACRYGT	2 cut(s)	198, 576
AgsI	TTSAA	3 cut(s)	41, 257, 569
AjnI	CCWGG	1 cut(s)	831
AluBI	AGCT	5 cut(s)	20, 167, 186, 773, 850
AluI	AGCT	5 cut(s)	20, 167, 186, 773, 850
Alw21I	GWGCWC	1 cut(s)	169
Alw26I	GTCTC	1 cut(s)	109
AlwI	GGATC	1 cut(s)	843
AoxI	GGCC	1 cut(s)	711
ApeKI	GCWGC	4 cut(s)	177, 263, 480, 515
ApoI	RAATTY	1 cut(s)	324
AseI	ATTAAT	1 cut(s)	764
AspLEI	GCGC	1 cut(s)	56
AspS9I	GGNCC	1 cut(s)	711
AsuHPI	GGTGA	3 cut(s)	121, 319, 481
AsuNHI	GCTAGC	1 cut(s)	649
BanII	GRGCYC	1 cut(s)	169
Bbv12I	GWGCWC	1 cut(s)	169
BbvI	GCAGC	4 cut(s)	189, 250, 467, 502
BccI	CCATC	1 cut(s)	816
BciT130I	CCWGG	1 cut(s)	833
BcoDI	GTCTC	1 cut(s)	109
BfaI	CTAG	1 cut(s)	650
BfuAI	ACCTGC	1 cut(s)	514
BisI	GCNGC	4 cut(s)	178, 264, 481, 516
BlsI	GCNGC	4 cut(s)	179, 265, 482, 517
BmcAI	AGTACT	2 cut(s)	244, 378
Bme1390I	CCNGG	1 cut(s)	833
BmgT120I	GGNCC	1 cut(s)	711
BmiI	GGNNCC	1 cut(s)	806
BmrFI	CCNGG	1 cut(s)	833
BmsI	GCATC	4 cut(s)	168, 309, 691, 734
BmtI	GCTAGC	1 cut(s)	653
BpmI	CTGGAG	1 cut(s)	460
BpuEI	CTTGAG	1 cut(s)	376
BsaJI	CCNNGG	2 cut(s)	144, 748
Bsc4I	CCNNNNNNNGG	2 cut(s)	169, 289
Bse1I	ACTGG	2 cut(s)	122, 443
Bse3DI	GCAATG	1 cut(s)	562
BseBI	CCWGG	1 cut(s)	833
BseDI	CCNNGG	2 cut(s)	144, 748
BseGI	GGATG	3 cut(s)	159, 725, 744
BseLI	CCNNNNNNNGG	2 cut(s)	169, 289
BseMI	GCAATG	1 cut(s)	562
BseNI	ACTGG	2 cut(s)	122, 443
BseXI	GCAGC	4 cut(s)	189, 250, 467, 502
Bsh1236I	CGCG	3 cut(s)	54, 56, 200
BshFI	GGCC	1 cut(s)	713
BsiHKAI	GWGCWC	1 cut(s)	169
BslFI	GGGAC	1 cut(s)	398
BslI	CCNNNNNNNGG	2 cut(s)	169, 289
BsmAI	GTCTC	1 cut(s)	109
BsmFI	GGGAC	1 cut(s)	398
BsnI	GGCC	1 cut(s)	713
Bsp1286I	GDGCHC	1 cut(s)	169
Bsp1407I	TGTACA	1 cut(s)	414
Bsp143I	GATC	2 cut(s)	682, 835
BspACI	CCGC	2 cut(s)	56, 483
BspANI	GGCC	1 cut(s)	713
BspFNI	CGCG	3 cut(s)	54, 56, 200
BspLI	GGNNCC	1 cut(s)	806
BspMI	ACCTGC	1 cut(s)	514
BspOI	GCTAGC	1 cut(s)	653
BspPI	GGATC	1 cut(s)	843
BsrDI	GCAATG	1 cut(s)	562
BsrGI	TGTACA	1 cut(s)	414
BsrI	ACTGG	2 cut(s)	122, 443
BssECI	CCNNGG	2 cut(s)	144, 748
BssMI	GATC	2 cut(s)	682, 835
BssT1I	CCWWGG	1 cut(s)	748
Bst2UI	CCWGG	1 cut(s)	833
Bst4CI	ACNGT	2 cut(s)	376, 621
BstAUI	TGTACA	1 cut(s)	414
BstC8I	GCNNGC	1 cut(s)	651
BstDEI	CTNAG	3 cut(s)	380, 707, 863
BstF5I	GGATG	3 cut(s)	159, 725, 744
BstFNI	CGCG	3 cut(s)	54, 56, 200
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	2 cut(s)	685, 838
BstMAI	GTCTC	1 cut(s)	109
BstMBI	GATC	2 cut(s)	682, 835
BstMWI	GCNNNNNNNGC	2 cut(s)	183, 710
BstNI	CCWGG	1 cut(s)	833
BstNSI	RCATGY	1 cut(s)	580
BstSCI	CCNGG	1 cut(s)	831
BstUI	CGCG	3 cut(s)	54, 56, 200
BstV1I	GCAGC	4 cut(s)	189, 250, 467, 502
BstXI	CCANNNNNNTGG	1 cut(s)	438
BsuRI	GGCC	1 cut(s)	713
BtgZI	GCGATG	1 cut(s)	59
BtsCI	GGATG	3 cut(s)	159, 725, 744
BtsIMutI	CAGTG	2 cut(s)	71, 436
BveI	ACCTGC	1 cut(s)	514
Cac8I	GCNNGC	1 cut(s)	651
CfoI	GCGC	1 cut(s)	56
Cfr13I	GGNCC	1 cut(s)	711
Csp6I	GTAC	4 cut(s)	243, 377, 415, 456
CviAII	CATG	3 cut(s)	96, 304, 577
CviQI	GTAC	4 cut(s)	243, 377, 415, 456
DdeI	CTNAG	3 cut(s)	380, 707, 863
DpnI	GATC	2 cut(s)	684, 837
DpnII	GATC	2 cut(s)	682, 835
Ecl136II	GAGCTC	1 cut(s)	167
Eco130I	CCWWGG	1 cut(s)	748
Eco24I	GRGCYC	1 cut(s)	169
Eco53kI	GAGCTC	1 cut(s)	167
Eco57I	CTGAAG	1 cut(s)	47
EcoICRI	GAGCTC	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	831
EcoT14I	CCWWGG	1 cut(s)	748
EcoT22I	ATGCAT	2 cut(s)	101, 727
EcoT38I	GRGCYC	1 cut(s)	169
ErhI	CCWWGG	1 cut(s)	748
FaeI	CATG	3 cut(s)	99, 307, 580
FalI	AAGNNNNNCTT	2 cut(s)	700, 732
FaqI	GGGAC	1 cut(s)	398
FatI	CATG	3 cut(s)	95, 303, 576
FauI	CCCGC	1 cut(s)	49
FblI	GTMKAC	1 cut(s)	581
Fnu4HI	GCNGC	4 cut(s)	178, 264, 481, 516
FokI	GGATG	3 cut(s)	146, 712, 731
FriOI	GRGCYC	1 cut(s)	169
Fsp4HI	GCNGC	4 cut(s)	178, 264, 481, 516
FspBI	CTAG	1 cut(s)	650
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	4 cut(s)	178, 264, 481, 516
GsuI	CTGGAG	1 cut(s)	460
HaeIII	GGCC	1 cut(s)	713
HhaI	GCGC	1 cut(s)	56
Hin1II	CATG	3 cut(s)	99, 307, 580
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HincII	GTYRAC	1 cut(s)	874
HindII	GTYRAC	1 cut(s)	874
HinfI	GANTC	5 cut(s)	9, 23, 49, 427, 826
HpaI	GTTAAC	1 cut(s)	874
HphI	GGTGA	3 cut(s)	121, 319, 481
Hpy166II	GTNNAC	2 cut(s)	582, 874
Hpy188I	TCNGA	6 cut(s)	17, 48, 145, 164, 339, 739
Hpy188III	TCNNGA	1 cut(s)	214
Hpy8I	GTNNAC	2 cut(s)	582, 874
HpyAV	CCTTC	4 cut(s)	281, 368, 554, 638
HpyCH4III	ACNGT	2 cut(s)	376, 621
HpyCH4V	TGCA	5 cut(s)	99, 177, 320, 704, 725
HpyF10VI	GCNNNNNNNGC	2 cut(s)	183, 710
HpyF3I	CTNAG	3 cut(s)	380, 707, 863
Hsp92II	CATG	3 cut(s)	99, 307, 580
HspAI	GCGC	1 cut(s)	54
KspAI	GTTAAC	1 cut(s)	874
Kzo9I	GATC	2 cut(s)	682, 835
LpnPI	CCDG	8 cut(s)	103, 155, 424, 452, 509, 818, 845, 891
Lsp1109I	GCAGC	4 cut(s)	189, 250, 467, 502
LweI	GCATC	4 cut(s)	168, 309, 691, 734
MaeI	CTAG	1 cut(s)	650
MaeIII	GTNAC	2 cut(s)	271, 609
MalI	GATC	2 cut(s)	684, 837
MboI	GATC	2 cut(s)	682, 835
MboII	GAAGA	3 cut(s)	4, 77, 581
MhlI	GDGCHC	1 cut(s)	169
MluCI	AATT	8 cut(s)	235, 324, 474, 549, 687, 761, 765, 879
MluI	ACGCGT	1 cut(s)	198
MlyI	GAGTC	2 cut(s)	43, 835
MmeI	TCCRAC	1 cut(s)	736
MnlI	CCTC	7 cut(s)	27, 139, 236, 278, 523, 537, 752
Mph1103I	ATGCAT	2 cut(s)	101, 727
MseI	TTAA	4 cut(s)	401, 764, 854, 873
MslI	CAYNNNNRTG	1 cut(s)	305
MspR9I	CCNGG	1 cut(s)	833
MvaI	CCWGG	1 cut(s)	833
MvnI	CGCG	3 cut(s)	54, 56, 200
MwoI	GCNNNNNNNGC	2 cut(s)	183, 710
NdeII	GATC	2 cut(s)	682, 835
NheI	GCTAGC	1 cut(s)	649
NlaIII	CATG	3 cut(s)	99, 307, 580
NlaIV	GGNNCC	1 cut(s)	806
NsiI	ATGCAT	2 cut(s)	101, 727
NspI	RCATGY	1 cut(s)	580
PciI	ACATGT	1 cut(s)	576
PcsI	WCGNNNNNNNCGW	1 cut(s)	835
PfeI	GAWTC	3 cut(s)	9, 23, 427
PkrI	GCNGC	4 cut(s)	179, 265, 482, 517
PleI	GAGTC	2 cut(s)	43, 834
PpsI	GAGTC	2 cut(s)	43, 834
PscI	ACATGT	1 cut(s)	576
PshBI	ATTAAT	1 cut(s)	764
Psp124BI	GAGCTC	1 cut(s)	169
Psp6I	CCWGG	1 cut(s)	831
PspGI	CCWGG	1 cut(s)	831
PspN4I	GGNNCC	1 cut(s)	806
PspPI	GGNCC	1 cut(s)	711
RsaI	GTAC	4 cut(s)	244, 378, 416, 457
RsaNI	GTAC	4 cut(s)	243, 377, 415, 456
RseI	CAYNNNNRTG	1 cut(s)	305
SacI	GAGCTC	1 cut(s)	169
SaqAI	TTAA	4 cut(s)	401, 764, 854, 873
SatI	GCNGC	4 cut(s)	178, 264, 481, 516
Sau3AI	GATC	2 cut(s)	682, 835
Sau96I	GGNCC	1 cut(s)	711
ScaI	AGTACT	2 cut(s)	244, 378
SchI	GAGTC	2 cut(s)	43, 835
ScrFI	CCNGG	1 cut(s)	833
SduI	GDGCHC	1 cut(s)	169
SfaNI	GCATC	4 cut(s)	168, 309, 691, 734
SmiMI	CAYNNNNRTG	1 cut(s)	305
SmlI	CTYRAG	1 cut(s)	391
SmoI	CTYRAG	1 cut(s)	391
Sse9I	AATT	8 cut(s)	235, 324, 474, 549, 687, 761, 765, 879
SsiI	CCGC	2 cut(s)	56, 483
SspI	AATATT	2 cut(s)	30, 786
SspMI	CTAG	1 cut(s)	650
SstI	GAGCTC	1 cut(s)	169
StyD4I	CCNGG	1 cut(s)	831
StyI	CCWWGG	1 cut(s)	748
TaaI	ACNGT	2 cut(s)	376, 621
TaqI	TCGA	2 cut(s)	351, 685
TasI	AATT	8 cut(s)	235, 324, 474, 549, 687, 761, 765, 879
TatI	WGTACW	3 cut(s)	242, 376, 414
TfiI	GAWTC	3 cut(s)	9, 23, 427
Tru1I	TTAA	4 cut(s)	401, 764, 854, 873
Tru9I	TTAA	4 cut(s)	401, 764, 854, 873
TscAI	CASTG	2 cut(s)	71, 443
TseI	GCWGC	4 cut(s)	177, 263, 480, 515
TspDTI	ATGAA	2 cut(s)	178, 573
TspGWI	ACGGA	1 cut(s)	245
TspRI	CASTG	2 cut(s)	71, 443
VspI	ATTAAT	1 cut(s)	764
XapI	RAATTY	1 cut(s)	324
XceI	RCATGY	1 cut(s)	580
XmiI	GTMKAC	1 cut(s)	581
XspI	CTAG	1 cut(s)	650
ZrmI	AGTACT	2 cut(s)	244, 378
Zsp2I	ATGCAT	2 cut(s)	101, 727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.