Rmu_sc0002038.1_g000019

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002038.1
OG0000950
Physical Location & Seq
Forward (+)
67709 .. 69178
1470 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002038.1_g000019.1.cds

Sequence Viewer

Length: 1470 bp
atggttggcatatatatgttgcagggcctggttctattgtggagttcatttaattatgcgggccggaaagccaatgcatctgataaagtattctacggagctggcctactgttagcattaggcgaggctggacggccggctgctttgggtaaatttctggacgaccaatatttaagtgaagttgatcacaagatcaaattacccgaaacaaaaagtattgaagaagaagatcatatttcgaccagaaacgaagaacaagaagatcatatttcgaccagaaaagaagaggatgacaagcaaaaacgagtggaagaggacaagcaaaaacgtgtggaaacccgtcaaaccgctttatggagccatccctggttcataggtgcggctgcacctcttgcccttgtaaagagatcttggcaaactcaactactgctctcaatgatcgcggtgggagtttcttacttattgttctggtatggcgtcttcgcgtattccagaaatatcagaaatgaagtaaatgatccagcagtagaagatgcaccaagagatcctggactttgccaagccatcaaaagtctctcaccacaaaaaaaaagcttgaagttttggctcaaacccaattccagaaaacgttattacaaagaaatgctagtcatgtgcttagccttcatcgtatacagtctggtggaggcaacggggagcaccttctttttcgatcaaatgactctactgaactatcacatcgggaactttaaattgcccatcatatatttcgttatactccaatccttgtcaagctccgtaatctcatttctctggaggttacgtgttccaaatcagtcaaaacgtgctacgttggtgaggatcggctgtggtttagtttgttctgtgctatgtatggttgctgcttggcaagttgagattcgtaggaaaattaagatcaatacagaatatacaggtgacccccaccagatggaaatttccatgagcgttctttggttaattccgcaattctccctgttagggtttatgagagggttagcggcagatggattgatcgagttttttgcggatcgagttgatggtaatggtaaaagaaaggctaggtattatggatcctacgccagtgaattagtcctgggtattggaacattactaaccgccgttagtattctcgggtttagacgaacttggttggttaatgatatatacaagaatcgtctggataagtactacaggggactagtattcataggtgttgctaacctttgctattacttctgtgtcgccgtttacttttataccaaggaggataactcgcaagtaagttgtgccgcagatggaaatgatcaaagtgaaatgccggaagaggacaaaaaatattatcatcacgaggtgtcctcaggtggtgcggagactccggacttagaagaaatgaagtcgagttttgattgttgtagtagtttcttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

489

Amino Acids

55.81

Weight (kDa)

7.91

Isoelectric Point (pI)

49.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 970
AccI GTMKAC 1 cut(s) 672
AccII CGCG 2 cut(s) 443, 485
AccIII TCCGGA 1 cut(s) 1417
AclI AACGTT 1 cut(s) 628
AclWI GGATC 6 cut(s) 512, 539, 869, 1077, 1107, 1120
AcoI YGGCCR 1 cut(s) 134
AcsI RAATTY 2 cut(s) 152, 975
AcyI GRCGYC 1 cut(s) 477
AdeI CACNNNGTG 1 cut(s) 1393
AfaI GTAC 1 cut(s) 1229
AfiI CCNNNNNNNGG 3 cut(s) 354, 970, 1020
AflIII ACRYGT 2 cut(s) 328, 823
AgsI TTSAA 2 cut(s) 221, 598
AhlI ACTAGT 1 cut(s) 1240
AjnI CCWGG 4 cut(s) 27, 365, 547, 1134
AluBI AGCT 3 cut(s) 101, 594, 795
AluI AGCT 3 cut(s) 101, 594, 795
Alw21I GWGCWC 1 cut(s) 701
Alw26I GTCTC 2 cut(s) 578, 1406
AlwI GGATC 6 cut(s) 512, 539, 869, 1077, 1107, 1120
AlwNI CAGNNNCTG 1 cut(s) 28
Ama87I CYCGRG 1 cut(s) 1172
Aor13HI TCCGGA 1 cut(s) 1417
AoxI GGCC 4 cut(s) 25, 61, 103, 134
ApeKI GCWGC 3 cut(s) 140, 383, 902
ApoI RAATTY 2 cut(s) 152, 975
AspS9I GGNCC 2 cut(s) 25, 61
AsuHPI GGTGA 3 cut(s) 570, 868, 968
AvaI CYCGRG 1 cut(s) 1172
AxyI CCTNAGG 1 cut(s) 1399
BamHI GGATCC 1 cut(s) 1112
BarI GAAGNNNNNNTAC 2 cut(s) 464, 496
BauI CACGAG 1 cut(s) 1388
BbsI GAAGAC 1 cut(s) 472
Bbv12I GWGCWC 1 cut(s) 701
BbvI GCAGC 3 cut(s) 127, 370, 889
BccI CCATC 7 cut(s) 369, 572, 767, 964, 1040, 1073, 1331
BceAI ACGGC 3 cut(s) 149, 1145, 1271
BcgI CGANNNNNNTGC 2 cut(s) 1046, 1080
BciT130I CCWGG 4 cut(s) 29, 367, 549, 1136
BclI TGATCA 2 cut(s) 184, 1345
BcoDI GTCTC 2 cut(s) 578, 1406
BcuI ACTAGT 1 cut(s) 1240
BfaI CTAG 3 cut(s) 647, 1101, 1241
BfmI CTRYAG 1 cut(s) 1231
BglII AGATCT 1 cut(s) 407
BisI GCNGC 6 cut(s) 141, 381, 384, 903, 1041, 1332
BlpI GCTNAGC 1 cut(s) 658
BlsI GCNGC 6 cut(s) 142, 382, 385, 904, 1042, 1333
BmcAI AGTACT 1 cut(s) 1229
Bme1390I CCNGG 4 cut(s) 29, 367, 549, 1136
BmeT110I CYCGRG 1 cut(s) 1172
BmgT120I GGNCC 2 cut(s) 25, 61
BmiI GGNNCC 2 cut(s) 359, 1114
BmrFI CCNGG 4 cut(s) 29, 367, 549, 1136
BmsI GCATC 2 cut(s) 86, 523
BpiI GAAGAC 1 cut(s) 472
BplI GAGNNNNNCTC 4 cut(s) 1298, 1330, 1382, 1414
BpmI CTGGAG 1 cut(s) 835
Bpu1102I GCTNAGC 1 cut(s) 658
BsaAI YACGTR 1 cut(s) 824
BsaHI GRCGYC 1 cut(s) 477
BsaJI CCNNGG 3 cut(s) 365, 1135, 1302
BsaWI WCCGGW 1 cut(s) 1417
BsaXI ACNNNNNCTCC 2 cut(s) 808, 838
Bsc4I CCNNNNNNNGG 3 cut(s) 354, 970, 1020
Bse118I RCCGGY 1 cut(s) 136
Bse1I ACTGG 1 cut(s) 1122
Bse21I CCTNAGG 1 cut(s) 1399
BseAI TCCGGA 1 cut(s) 1417
BseBI CCWGG 4 cut(s) 29, 367, 549, 1136
BseDI CCNNGG 3 cut(s) 365, 1135, 1302
BseGI GGATG 2 cut(s) 295, 361
BseLI CCNNNNNNNGG 3 cut(s) 354, 970, 1020
BseMII CTCAG 1 cut(s) 1413
BseNI ACTGG 1 cut(s) 1122
BseX3I CGGCCG 1 cut(s) 134
BseXI GCAGC 3 cut(s) 127, 370, 889
BsgI GTGCAG 1 cut(s) 369
Bsh1236I CGCG 2 cut(s) 443, 485
Bsh1285I CGRYCG 1 cut(s) 137
BshFI GGCC 4 cut(s) 27, 63, 105, 136
BsiEI CGRYCG 1 cut(s) 137
BsiHKAI GWGCWC 1 cut(s) 701
BsiHKCI CYCGRG 1 cut(s) 1172
BsiSI CCGG 4 cut(s) 64, 137, 1361, 1418
BslFI GGGAC 1 cut(s) 1251
BslI CCNNNNNNNGG 3 cut(s) 354, 970, 1020
BsmAI GTCTC 2 cut(s) 578, 1406
BsmFI GGGAC 1 cut(s) 1251
BsnI GGCC 4 cut(s) 27, 63, 105, 136
BsoBI CYCGRG 1 cut(s) 1172
Bsp1286I GDGCHC 1 cut(s) 701
Bsp13I TCCGGA 1 cut(s) 1417
Bsp1720I GCTNAGC 1 cut(s) 658
BspANI GGCC 4 cut(s) 27, 63, 105, 136
BspCNI CTCAG 1 cut(s) 1412
BspEI TCCGGA 1 cut(s) 1417
BspFNI CGCG 2 cut(s) 443, 485
BspLI GGNNCC 2 cut(s) 359, 1114
BspPI GGATC 6 cut(s) 512, 539, 869, 1077, 1107, 1120
BsrFI RCCGGY 1 cut(s) 136
BsrI ACTGG 1 cut(s) 1122
BssAI RCCGGY 1 cut(s) 136
BssECI CCNNGG 3 cut(s) 365, 1135, 1302
BssNAI GTATAC 1 cut(s) 673
BssNI GRCGYC 1 cut(s) 477
BssSI CACGAG 1 cut(s) 1388
BssT1I CCWWGG 1 cut(s) 1302
Bst1107I GTATAC 1 cut(s) 673
Bst2BI CACGAG 1 cut(s) 1388
Bst2UI CCWGG 4 cut(s) 29, 367, 549, 1136
Bst4CI ACNGT 2 cut(s) 111, 677
Bst6I CTCTTC 3 cut(s) 279, 306, 1359
BstACI GRCGYC 1 cut(s) 477
BstAPI GCANNNNNTGC 1 cut(s) 392
BstBAI YACGTR 1 cut(s) 824
BstC8I GCNNGC 3 cut(s) 61, 103, 138
BstDEI CTNAG 3 cut(s) 658, 1399, 1423
BstEII GGTNACC 1 cut(s) 956
BstF5I GGATG 2 cut(s) 295, 361
BstFNI CGCG 2 cut(s) 443, 485
BstMAI GTCTC 2 cut(s) 578, 1406
BstMCI CGRYCG 1 cut(s) 137
BstMWI GCNNNNNNNGC 1 cut(s) 392
BstNI CCWGG 4 cut(s) 29, 367, 549, 1136
BstPI GGTNACC 1 cut(s) 956
BstSCI CCNGG 4 cut(s) 27, 365, 547, 1134
BstSFI CTRYAG 1 cut(s) 1231
BstUI CGCG 2 cut(s) 443, 485
BstV1I GCAGC 3 cut(s) 127, 370, 889
BstV2I GAAGAC 1 cut(s) 472
BstX2I RGATCY 3 cut(s) 407, 544, 1112
BstYI RGATCY 3 cut(s) 407, 544, 1112
BstZ17I GTATAC 1 cut(s) 673
BstZI CGGCCG 1 cut(s) 134
Bsu36I CCTNAGG 1 cut(s) 1399
BsuRI GGCC 4 cut(s) 27, 63, 105, 136
BtsCI GGATG 2 cut(s) 295, 361
BtsIMutI CAGTG 1 cut(s) 1129
Cac8I GCNNGC 3 cut(s) 61, 103, 138
CaiI CAGNNNCTG 1 cut(s) 28
Cfr10I RCCGGY 1 cut(s) 136
Cfr13I GGNCC 2 cut(s) 25, 61
CseI GACGC 1 cut(s) 466
Csp6I GTAC 1 cut(s) 1228
CviAII CATG 2 cut(s) 652, 982
CviQI GTAC 1 cut(s) 1228
DdeI CTNAG 3 cut(s) 658, 1399, 1423
DraI TTTAAA 1 cut(s) 751
DraIII CACNNNGTG 1 cut(s) 1393
EaeI YGGCCR 1 cut(s) 134
EagI CGGCCG 1 cut(s) 134
Eam1104I CTCTTC 3 cut(s) 279, 306, 1359
EarI CTCTTC 3 cut(s) 279, 306, 1359
EclXI CGGCCG 1 cut(s) 134
Eco130I CCWWGG 1 cut(s) 1302
Eco52I CGGCCG 1 cut(s) 134
Eco81I CCTNAGG 1 cut(s) 1399
Eco88I CYCGRG 1 cut(s) 1172
Eco91I GGTNACC 1 cut(s) 956
EcoO109I RGGNCCY 1 cut(s) 25
EcoO65I GGTNACC 1 cut(s) 956
EcoRII CCWGG 4 cut(s) 27, 365, 547, 1134
EcoT14I CCWWGG 1 cut(s) 1302
EcoT22I ATGCAT 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 1302
FaeI CATG 2 cut(s) 655, 985
FaqI GGGAC 1 cut(s) 1251
FatI CATG 2 cut(s) 651, 981
FauI CCCGC 1 cut(s) 52
FbaI TGATCA 2 cut(s) 184, 1345
FblI GTMKAC 1 cut(s) 672
Fnu4HI GCNGC 6 cut(s) 141, 381, 384, 903, 1041, 1332
FokI GGATG 2 cut(s) 302, 348
Fsp4HI GCNGC 6 cut(s) 141, 381, 384, 903, 1041, 1332
FspBI CTAG 3 cut(s) 647, 1101, 1241
GluI GCNGC 6 cut(s) 141, 381, 384, 903, 1041, 1332
GsuI CTGGAG 1 cut(s) 835
HaeIII GGCC 4 cut(s) 27, 63, 105, 136
HapII CCGG 4 cut(s) 64, 137, 1361, 1418
HgaI GACGC 1 cut(s) 466
Hin1I GRCGYC 1 cut(s) 477
Hin1II CATG 2 cut(s) 655, 985
HindIII AAGCTT 1 cut(s) 592
HinfI GANTC 4 cut(s) 721, 919, 1213, 1414
HpaII CCGG 4 cut(s) 64, 137, 1361, 1418
HphI GGTGA 3 cut(s) 570, 868, 968
Hpy166II GTNNAC 2 cut(s) 673, 1291
Hpy188I TCNGA 2 cut(s) 82, 503
Hpy188III TCNNGA 8 cut(s) 158, 492, 621, 742, 814, 1220, 1388, 1418
Hpy8I GTNNAC 2 cut(s) 673, 1291
HpyAV CCTTC 2 cut(s) 673, 712
HpyCH4III ACNGT 2 cut(s) 111, 677
HpyCH4IV ACGT 5 cut(s) 328, 628, 823, 844, 851
HpyCH4V TGCA 4 cut(s) 22, 77, 386, 536
HpyF10VI GCNNNNNNNGC 1 cut(s) 392
HpyF3I CTNAG 3 cut(s) 658, 1399, 1423
HpySE526I ACGT 5 cut(s) 328, 628, 823, 844, 851
Hsp92I GRCGYC 1 cut(s) 477
Hsp92II CATG 2 cut(s) 655, 985
Kpn2I TCCGGA 1 cut(s) 1417
KroI GCCGGC 1 cut(s) 136
KroNI GCCGGC 1 cut(s) 138
Ksp22I TGATCA 2 cut(s) 184, 1345
LmnI GCTCC 4 cut(s) 98, 357, 696, 800
Lsp1109I GCAGC 3 cut(s) 127, 370, 889
LweI GCATC 2 cut(s) 86, 523
MaeI CTAG 3 cut(s) 647, 1101, 1241
MaeII ACGT 5 cut(s) 328, 628, 823, 844, 851
MaeIII GTNAC 2 cut(s) 819, 956
MflI RGATCY 3 cut(s) 407, 544, 1112
MhlI GDGCHC 1 cut(s) 701
MlyI GAGTC 2 cut(s) 715, 1408
Mph1103I ATGCAT 1 cut(s) 79
MroI TCCGGA 1 cut(s) 1417
MroNI GCCGGC 1 cut(s) 136
MseI TTAA 6 cut(s) 51, 173, 750, 933, 998, 1197
MslI CAYNNNNRTG 1 cut(s) 14
MspI CCGG 4 cut(s) 64, 137, 1361, 1418
MspR9I CCNGG 4 cut(s) 29, 367, 549, 1136
MvaI CCWGG 4 cut(s) 29, 367, 549, 1136
MvnI CGCG 2 cut(s) 443, 485
MwoI GCNNNNNNNGC 1 cut(s) 392
NaeI GCCGGC 1 cut(s) 138
NgoMIV GCCGGC 1 cut(s) 136
NlaIII CATG 2 cut(s) 655, 985
NlaIV GGNNCC 2 cut(s) 359, 1114
NmuCI GTSAC 1 cut(s) 956
NsiI ATGCAT 1 cut(s) 79
PdiI GCCGGC 1 cut(s) 138
PfeI GAWTC 2 cut(s) 919, 1213
PflMI CCANNNNNTGG 1 cut(s) 970
PfoI TCCNGGA 1 cut(s) 547
PkrI GCNGC 6 cut(s) 142, 382, 385, 904, 1042, 1333
PleI GAGTC 2 cut(s) 715, 1408
PpsI GAGTC 2 cut(s) 715, 1408
Ppu21I YACGTR 1 cut(s) 824
Psp1406I AACGTT 1 cut(s) 628
Psp6I CCWGG 4 cut(s) 27, 365, 547, 1134
PspEI GGTNACC 1 cut(s) 956
PspGI CCWGG 4 cut(s) 27, 365, 547, 1134
PspN4I GGNNCC 2 cut(s) 359, 1114
PspPI GGNCC 2 cut(s) 25, 61
PstNI CAGNNNCTG 1 cut(s) 28
PsuI RGATCY 3 cut(s) 407, 544, 1112
RsaI GTAC 1 cut(s) 1229
RsaNI GTAC 1 cut(s) 1228
RseI CAYNNNNRTG 1 cut(s) 14
SaqAI TTAA 6 cut(s) 51, 173, 750, 933, 998, 1197
SatI GCNGC 6 cut(s) 141, 381, 384, 903, 1041, 1332
Sau96I GGNCC 2 cut(s) 25, 61
ScaI AGTACT 1 cut(s) 1229
SchI GAGTC 2 cut(s) 715, 1408
ScrFI CCNGG 4 cut(s) 29, 367, 549, 1136
SduI GDGCHC 1 cut(s) 701
SfaNI GCATC 2 cut(s) 86, 523
SfcI CTRYAG 1 cut(s) 1231
SmiMI CAYNNNNRTG 1 cut(s) 14
SpeI ACTAGT 1 cut(s) 1240
SspI AATATT 2 cut(s) 170, 1379
SspMI CTAG 3 cut(s) 647, 1101, 1241
StyD4I CCNGG 4 cut(s) 27, 365, 547, 1134
StyI CCWWGG 1 cut(s) 1302
TaaI ACNGT 2 cut(s) 111, 677
TaiI ACGT 5 cut(s) 331, 631, 826, 847, 854
TaqI TCGA 6 cut(s) 239, 272, 711, 1056, 1072, 1439
TatI WGTACW 1 cut(s) 1227
TauI GCSGC 3 cut(s) 383, 1043, 1334
TfiI GAWTC 2 cut(s) 919, 1213
Tru1I TTAA 6 cut(s) 51, 173, 750, 933, 998, 1197
Tru9I TTAA 6 cut(s) 51, 173, 750, 933, 998, 1197
TscAI CASTG 1 cut(s) 1129
TseFI GTSAC 1 cut(s) 956
TseI GCWGC 3 cut(s) 140, 383, 902
Tsp45I GTSAC 1 cut(s) 956
TspDTI ATGAA 6 cut(s) 36, 361, 522, 655, 1237, 1448
TspGWI ACGGA 2 cut(s) 111, 787
TspRI CASTG 1 cut(s) 1129
Van91I CCANNNNNTGG 1 cut(s) 970
XapI RAATTY 2 cut(s) 152, 975
XmiI GTMKAC 1 cut(s) 672
XspI CTAG 3 cut(s) 647, 1101, 1241
ZrmI AGTACT 1 cut(s) 1229
Zsp2I ATGCAT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.