Prupe.1G124400_v2.0.a1

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000950
Physical Location & Seq
Reverse (-)
9820170 .. 9823638
3469 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G124400.1

Sequence Viewer

Length: 1584 bp
ATGGGTTTGGGAGCACTCATTCACTTTGTGAGAGAGTGCATCCATAAGTACCTCTACTTTTCCAAGGCTACAATATGCATCCAGGGGTTGGTTTTGAGCCATAGCTTCGTCAACCATGCGATAATGTCTATCTTGATAGTGTACCTCCAAGACAATTGGTTTCATGAACATTTTCTAATAGCCGCCGTAGTTACAAATGTGCAAGAAGGGGTAGCAGACATATTGGTGATTTTCCTAGCTCATTTCTCACACACATTCAATGGTGGTCTCAAAATAATTGCCACCACAAATGCTGCCTATATTCTTGGGCTATCTCTGTTATGGCTTCCTAATGAATATAAGAGTGAGGACTACGCAGCAATGGCCAGGATATTCTATGGAGCTGTGGTACTATTAACATTAGGCGAATCTGGGCGATCCGCTGCATTGAAAGAATTTCTTAAGAAGCAATGTTTAAGCAAACATAAAGAAACAGGACGCACAGATGACAAACGACCGGAAGGATGGGAAGAAGCTAGCGAACAGAAAGAAATAACGGCAGAAAAGCATACAGAAGCTGGTGGCGACCAACAGGTGACGAAAGAAACGGCAGAAAGGGATAAAAAGGACTTCTGGGGTGTTCCATGGTTTTTAGGTGCAGTGGTACCTCTTTTCCTTTCAAAAACAACTTGGACTCAGATCTTCATGATTTCAACAATTGCAATGGCAGTTTCTTATTTATTGTTCTGGTTTGGGTTCAACGATTATTTGAAAAACAATAAAGAAGCACAAGCAGGGGAGCATCCCCAAGTCACGGAAAGAGAGAACCTTTGGACACTGAACAAAAAGGTGAGGAAGAAAAAACGTTTGCGCAAAGAAATTGTAGCTTCATGGTTGGCCTTCTTTGTATTCAGTATGGTCAAGGCAGCGGGGAGCACCTTCTTTTTCGAACAAATGAGTAACTTGAAAAATCCCATCCCCAATAATGACCCTGCAGTTTATTTCAATGTGCTTAGCTCCTTTTCGAGGTACATAATCTCATTTCTCTTCCCCAAACTAATTCCAAAGCGAACGCGGGTGAGAATTGGCTGTGGAATGGCTTCTACTGTGTTATGTTGCGTTGCTGCTTGGGTGGTTGAGATCCACAGGATGAGGAAAGTTACGAGGGCAGGGCTTGAAGATGACACTTTTGATATTTCTATGAGCATATTTTGGTTGGTTCCACAGTTCTTCCTGTTAGGACTTATGGAAGGGTTAGCCGTAGATGGATTGATTGATCTTTTGGCTGATAGAGTGGACGTGGAGGATAAAGAAATGGCTAAGAATTATGGATCCCACACCAGCGACTTAGTCGTGGGGATTGGAAAATTACTAACTGCTCCTATTAGCTTAGCATTTAGTCATAGATGGTTCAATGACAGCATAAATCTGAGTCGTCTGGACAAGTTTTACAGACTGCTAACGTTTCTAAGTCGCTGTAGCTTCGTCTACTACTTGTATGTCGGCTTTTACTTTTATAGCAAGGATGACACACATAACTCCGCCATCGAAGAACACGAACAAGGCCGTAATGGAAGTGGAGTTGTGGAAATGGCAACTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

528

Amino Acids

59.99

Weight (kDa)

8.03

Isoelectric Point (pI)

31.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 851
Acc65I GGTACC 1 cut(s) 643
AccB1I GGYRCC 1 cut(s) 643
AccB7I CCANNNNNTGG 1 cut(s) 88
AccI GTMKAC 1 cut(s) 1467
AccII CGCG 1 cut(s) 1054
AciI CCGC 5 cut(s) 183, 420, 908, 1054, 1521
AclI AACGTT 2 cut(s) 844, 1442
AclWI GGATC 4 cut(s) 411, 1114, 1305, 1318
AcoI YGGCCR 1 cut(s) 363
AcsI RAATTY 1 cut(s) 434
AdeI CACNNNGTG 1 cut(s) 28
AfaI GTAC 5 cut(s) 50, 143, 390, 645, 1010
AfiI CCNNNNNNNGG 3 cut(s) 88, 793, 1005
AflII CTTAAG 1 cut(s) 440
AjiI CACGTC 1 cut(s) 1279
AjnI CCWGG 2 cut(s) 81, 365
AluBI AGCT 9 cut(s) 105, 239, 383, 515, 557, 866, 996, 1368, 1461
AluI AGCT 9 cut(s) 105, 239, 383, 515, 557, 866, 996, 1368, 1461
Alw21I GWGCWC 2 cut(s) 16, 917
Alw26I GTCTC 1 cut(s) 272
AlwI GGATC 4 cut(s) 411, 1114, 1305, 1318
AlwNI CAGNNNCTG 1 cut(s) 557
AoxI GGCC 3 cut(s) 363, 876, 1543
ApeKI GCWGC 5 cut(s) 293, 356, 422, 905, 1103
ApoI RAATTY 1 cut(s) 434
Asp700I GAANNNNTTC 2 cut(s) 171, 1078
Asp718I GGTACC 1 cut(s) 643
AspLEI GCGC 1 cut(s) 852
AsuHPI GGTGA 4 cut(s) 238, 586, 841, 1069
AsuII TTCGAA 1 cut(s) 927
AsuNHI GCTAGC 1 cut(s) 515
BalI TGGCCA 1 cut(s) 365
BamHI GGATCC 1 cut(s) 1310
BanI GGYRCC 1 cut(s) 643
Bbv12I GWGCWC 2 cut(s) 16, 917
BbvI GCAGC 5 cut(s) 280, 368, 409, 917, 1090
BccI CCATC 5 cut(s) 498, 962, 1238, 1380, 1532
BceAI ACGGC 5 cut(s) 170, 552, 603, 1223, 1530
BciT130I CCWGG 2 cut(s) 83, 367
BcoDI GTCTC 1 cut(s) 272
BfaI CTAG 2 cut(s) 236, 516
BfmI CTRYAG 2 cut(s) 972, 1456
BfrI CTTAAG 1 cut(s) 440
BglII AGATCT 1 cut(s) 678
BisI GCNGC 6 cut(s) 183, 294, 357, 423, 906, 1104
BlpI GCTNAGC 2 cut(s) 992, 1369
BlsI GCNGC 6 cut(s) 184, 295, 358, 424, 907, 1105
Bme1390I CCNGG 2 cut(s) 83, 367
BmgBI CACGTC 1 cut(s) 1279
BmiI GGNNCC 3 cut(s) 645, 1200, 1312
BmrFI CCNGG 2 cut(s) 83, 367
BmsI GCATC 3 cut(s) 48, 87, 790
BmtI GCTAGC 1 cut(s) 519
Bpu1102I GCTNAGC 2 cut(s) 992, 1369
Bpu14I TTCGAA 1 cut(s) 927
BsaI GGTCTC 1 cut(s) 272
BsaJI CCNNGG 3 cut(s) 63, 82, 623
BsaWI WCCGGW 1 cut(s) 496
BsaXI ACNNNNNCTCC 2 cut(s) 372, 402
Bsc4I CCNNNNNNNGG 3 cut(s) 88, 793, 1005
Bse3DI GCAATG 3 cut(s) 366, 455, 708
BseBI CCWGG 2 cut(s) 83, 367
BseDI CCNNGG 3 cut(s) 63, 82, 623
BseGI GGATG 7 cut(s) 39, 78, 509, 781, 954, 1134, 1510
BseLI CCNNNNNNNGG 3 cut(s) 88, 793, 1005
BseMI GCAATG 3 cut(s) 366, 455, 708
BseMII CTCAG 2 cut(s) 689, 1400
BseXI GCAGC 5 cut(s) 280, 368, 409, 917, 1090
BsgI GTGCAG 1 cut(s) 657
Bsh1236I CGCG 1 cut(s) 1054
Bsh1285I CGRYCG 1 cut(s) 497
BshFI GGCC 3 cut(s) 365, 878, 1545
BshNI GGYRCC 1 cut(s) 643
BsiEI CGRYCG 1 cut(s) 497
BsiHKAI GWGCWC 2 cut(s) 16, 917
BsiSI CCGG 1 cut(s) 497
BslI CCNNNNNNNGG 3 cut(s) 88, 793, 1005
BsmAI GTCTC 1 cut(s) 272
BsnI GGCC 3 cut(s) 365, 878, 1545
Bso31I GGTCTC 1 cut(s) 272
Bsp119I TTCGAA 1 cut(s) 927
Bsp1286I GDGCHC 2 cut(s) 16, 917
Bsp143I GATC 5 cut(s) 416, 678, 1119, 1255, 1310
Bsp1720I GCTNAGC 2 cut(s) 992, 1369
Bsp19I CCATGG 1 cut(s) 623
BspACI CCGC 5 cut(s) 183, 420, 908, 1054, 1521
BspANI GGCC 3 cut(s) 365, 878, 1545
BspCNI CTCAG 2 cut(s) 688, 1401
BspFNI CGCG 1 cut(s) 1054
BspHI TCATGA 2 cut(s) 163, 684
BspLI GGNNCC 3 cut(s) 645, 1200, 1312
BspMAI CTGCAG 1 cut(s) 976
BspOI GCTAGC 1 cut(s) 519
BspPI GGATC 4 cut(s) 411, 1114, 1305, 1318
BspT104I TTCGAA 1 cut(s) 927
BspT107I GGYRCC 1 cut(s) 643
BspTI CTTAAG 1 cut(s) 440
BspTNI GGTCTC 1 cut(s) 272
BsrDI GCAATG 3 cut(s) 366, 455, 708
BssECI CCNNGG 3 cut(s) 63, 82, 623
BssMI GATC 5 cut(s) 416, 678, 1119, 1255, 1310
BssT1I CCWWGG 2 cut(s) 63, 623
Bst2UI CCWGG 2 cut(s) 83, 367
Bst4CI ACNGT 3 cut(s) 1087, 1206, 1579
Bst6I CTCTTC 1 cut(s) 1031
BstAFI CTTAAG 1 cut(s) 440
BstBI TTCGAA 1 cut(s) 927
BstC8I GCNNGC 1 cut(s) 517
BstDEI CTNAG 7 cut(s) 675, 992, 1299, 1327, 1369, 1409, 1448
BstDSI CCRYGG 1 cut(s) 623
BstENI CCTNNNNNAGG 1 cut(s) 1003
BstF5I GGATG 7 cut(s) 39, 78, 509, 781, 954, 1134, 1510
BstFNI CGCG 1 cut(s) 1054
BstHHI GCGC 1 cut(s) 852
BstKTI GATC 5 cut(s) 419, 681, 1122, 1258, 1313
BstMAI GTCTC 1 cut(s) 272
BstMBI GATC 5 cut(s) 416, 678, 1119, 1255, 1310
BstMCI CGRYCG 1 cut(s) 497
BstMWI GCNNNNNNNGC 1 cut(s) 362
BstNI CCWGG 2 cut(s) 83, 367
BstSCI CCNGG 2 cut(s) 81, 365
BstSFI CTRYAG 2 cut(s) 972, 1456
BstUI CGCG 1 cut(s) 1054
BstV1I GCAGC 5 cut(s) 280, 368, 409, 917, 1090
BstX2I RGATCY 3 cut(s) 678, 1119, 1310
BstYI RGATCY 3 cut(s) 678, 1119, 1310
BsuRI GGCC 3 cut(s) 365, 878, 1545
BtgI CCRYGG 1 cut(s) 623
BtrI CACGTC 1 cut(s) 1279
BtsCI GGATG 7 cut(s) 39, 78, 509, 781, 954, 1134, 1510
BtsI GCAGTG 1 cut(s) 645
BtsIMutI CAGTG 2 cut(s) 645, 815
Cac8I GCNNGC 1 cut(s) 517
CaiI CAGNNNCTG 1 cut(s) 557
CciI TCATGA 2 cut(s) 163, 684
CfoI GCGC 1 cut(s) 852
CseI GACGC 1 cut(s) 486
Csp6I GTAC 5 cut(s) 49, 142, 389, 644, 1009
CviAII CATG 5 cut(s) 116, 164, 624, 685, 870
CviQI GTAC 5 cut(s) 49, 142, 389, 644, 1009
DdeI CTNAG 7 cut(s) 675, 992, 1299, 1327, 1369, 1409, 1448
DpnI GATC 5 cut(s) 418, 680, 1121, 1257, 1312
DpnII GATC 5 cut(s) 416, 678, 1119, 1255, 1310
DraIII CACNNNGTG 1 cut(s) 28
EaeI YGGCCR 1 cut(s) 363
Eam1104I CTCTTC 1 cut(s) 1031
EarI CTCTTC 1 cut(s) 1031
EciI GGCGGA 1 cut(s) 1510
Eco130I CCWWGG 2 cut(s) 63, 623
Eco31I GGTCTC 1 cut(s) 272
EcoNI CCTNNNNNAGG 1 cut(s) 1003
EcoRII CCWGG 2 cut(s) 81, 365
EcoT14I CCWWGG 2 cut(s) 63, 623
EcoT22I ATGCAT 1 cut(s) 80
ErhI CCWWGG 2 cut(s) 63, 623
FaeI CATG 5 cut(s) 119, 167, 627, 688, 873
FalI AAGNNNNNCTT 2 cut(s) 423, 455
FatI CATG 5 cut(s) 115, 163, 623, 684, 869
FauI CCCGC 2 cut(s) 901, 1047
FblI GTMKAC 1 cut(s) 1467
Fnu4HI GCNGC 6 cut(s) 183, 294, 357, 423, 906, 1104
FokI GGATG 7 cut(s) 26, 65, 516, 768, 941, 1141, 1517
Fsp4HI GCNGC 6 cut(s) 183, 294, 357, 423, 906, 1104
FspBI CTAG 2 cut(s) 236, 516
FspI TGCGCA 1 cut(s) 851
GlaI GCGC 1 cut(s) 851
GluI GCNGC 6 cut(s) 183, 294, 357, 423, 906, 1104
HaeIII GGCC 3 cut(s) 365, 878, 1545
HapII CCGG 1 cut(s) 497
HgaI GACGC 1 cut(s) 486
HhaI GCGC 1 cut(s) 852
Hin1II CATG 5 cut(s) 119, 167, 627, 688, 873
Hin6I GCGC 1 cut(s) 850
HinP1I GCGC 1 cut(s) 850
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HinfI GANTC 3 cut(s) 407, 673, 1411
HpaII CCGG 1 cut(s) 497
HphI GGTGA 4 cut(s) 238, 586, 841, 1069
Hpy166II GTNNAC 4 cut(s) 112, 142, 1276, 1468
Hpy188I TCNGA 2 cut(s) 678, 1410
Hpy188III TCNNGA 4 cut(s) 133, 164, 685, 1418
Hpy8I GTNNAC 4 cut(s) 112, 142, 1276, 1468
HpyAV CCTTC 5 cut(s) 200, 494, 889, 928, 1223
HpyCH4III ACNGT 3 cut(s) 1087, 1206, 1579
HpyCH4IV ACGT 3 cut(s) 844, 1278, 1442
HpyCH4V TGCA 7 cut(s) 39, 78, 202, 425, 638, 701, 974
HpyF10VI GCNNNNNNNGC 1 cut(s) 362
HpyF3I CTNAG 7 cut(s) 675, 992, 1299, 1327, 1369, 1409, 1448
HpySE526I ACGT 3 cut(s) 844, 1278, 1442
Hsp92II CATG 5 cut(s) 119, 167, 627, 688, 873
HspAI GCGC 1 cut(s) 850
KpnI GGTACC 1 cut(s) 647
Kzo9I GATC 5 cut(s) 416, 678, 1119, 1255, 1310
LmnI GCTCC 6 cut(s) 11, 380, 778, 912, 1001, 1363
Lsp1109I GCAGC 5 cut(s) 280, 368, 409, 917, 1090
LweI GCATC 3 cut(s) 48, 87, 790
MaeI CTAG 2 cut(s) 236, 516
MaeII ACGT 3 cut(s) 844, 1278, 1442
MaeIII GTNAC 5 cut(s) 190, 574, 790, 938, 1138
MalI GATC 5 cut(s) 418, 680, 1121, 1257, 1312
MboI GATC 5 cut(s) 416, 678, 1119, 1255, 1310
MboII GAAGA 7 cut(s) 521, 673, 847, 1018, 1169, 1201, 1541
MfeI CAATTG 2 cut(s) 154, 696
MflI RGATCY 3 cut(s) 678, 1119, 1310
MhlI GDGCHC 2 cut(s) 16, 917
MlsI TGGCCA 1 cut(s) 365
MluCI AATT 9 cut(s) 154, 276, 434, 696, 858, 1038, 1062, 1303, 1346
MluNI TGGCCA 1 cut(s) 365
MlyI GAGTC 2 cut(s) 667, 1420
MnlI CCTC 9 cut(s) 62, 155, 340, 657, 825, 999, 1125, 1137, 1276
Mox20I TGGCCA 1 cut(s) 365
Mph1103I ATGCAT 1 cut(s) 80
MroXI GAANNNNTTC 2 cut(s) 171, 1078
MscI TGGCCA 1 cut(s) 365
MseI TTAA 3 cut(s) 395, 441, 455
MslI CAYNNNNRTG 1 cut(s) 224
Msp20I TGGCCA 1 cut(s) 365
MspA1I CMGCKG 2 cut(s) 422, 908
MspCI CTTAAG 1 cut(s) 440
MspI CCGG 1 cut(s) 497
MspR9I CCNGG 2 cut(s) 83, 367
MunI CAATTG 2 cut(s) 154, 696
MvaI CCWGG 2 cut(s) 83, 367
MvnI CGCG 1 cut(s) 1054
MwoI GCNNNNNNNGC 1 cut(s) 362
NcoI CCATGG 1 cut(s) 623
NdeII GATC 5 cut(s) 416, 678, 1119, 1255, 1310
NheI GCTAGC 1 cut(s) 515
NlaIII CATG 5 cut(s) 119, 167, 627, 688, 873
NlaIV GGNNCC 3 cut(s) 645, 1200, 1312
NmuCI GTSAC 2 cut(s) 574, 790
NsbI TGCGCA 1 cut(s) 851
NsiI ATGCAT 1 cut(s) 80
NspV TTCGAA 1 cut(s) 927
PagI TCATGA 2 cut(s) 163, 684
PcsI WCGNNNNNNNCGW 1 cut(s) 1533
PdmI GAANNNNTTC 2 cut(s) 171, 1078
PfeI GAWTC 1 cut(s) 407
PflFI GACNNNGTC 1 cut(s) 1328
PflMI CCANNNNNTGG 1 cut(s) 88
PkrI GCNGC 6 cut(s) 184, 295, 358, 424, 907, 1105
PleI GAGTC 2 cut(s) 667, 1419
PpsI GAGTC 2 cut(s) 667, 1419
Psp1406I AACGTT 2 cut(s) 844, 1442
Psp6I CCWGG 2 cut(s) 81, 365
PspGI CCWGG 2 cut(s) 81, 365
PspN4I GGNNCC 3 cut(s) 645, 1200, 1312
PstI CTGCAG 1 cut(s) 976
PstNI CAGNNNCTG 1 cut(s) 557
PsuI RGATCY 3 cut(s) 678, 1119, 1310
PsyI GACNNNGTC 1 cut(s) 1328
RsaI GTAC 5 cut(s) 50, 143, 390, 645, 1010
RsaNI GTAC 5 cut(s) 49, 142, 389, 644, 1009
RseI CAYNNNNRTG 1 cut(s) 224
SaqAI TTAA 3 cut(s) 395, 441, 455
SatI GCNGC 6 cut(s) 183, 294, 357, 423, 906, 1104
Sau3AI GATC 5 cut(s) 416, 678, 1119, 1255, 1310
SchI GAGTC 2 cut(s) 667, 1420
ScrFI CCNGG 2 cut(s) 83, 367
SduI GDGCHC 2 cut(s) 16, 917
SfaNI GCATC 3 cut(s) 48, 87, 790
SfcI CTRYAG 2 cut(s) 972, 1456
SfuI TTCGAA 1 cut(s) 927
SmiMI CAYNNNNRTG 1 cut(s) 224
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
Sse9I AATT 9 cut(s) 154, 276, 434, 696, 858, 1038, 1062, 1303, 1346
SsiI CCGC 5 cut(s) 183, 420, 908, 1054, 1521
SspMI CTAG 2 cut(s) 236, 516
StyD4I CCNGG 2 cut(s) 81, 365
StyI CCWWGG 2 cut(s) 63, 623
TaaI ACNGT 3 cut(s) 1087, 1206, 1579
TaiI ACGT 3 cut(s) 847, 1281, 1445
TaqI TCGA 3 cut(s) 927, 1004, 1527
TasI AATT 9 cut(s) 154, 276, 434, 696, 858, 1038, 1062, 1303, 1346
TauI GCSGC 1 cut(s) 185
TfiI GAWTC 1 cut(s) 407
Tru1I TTAA 3 cut(s) 395, 441, 455
Tru9I TTAA 3 cut(s) 395, 441, 455
TscAI CASTG 2 cut(s) 645, 822
TseFI GTSAC 2 cut(s) 574, 790
TseI GCWGC 5 cut(s) 293, 356, 422, 905, 1103
Tsp45I GTSAC 2 cut(s) 574, 790
TspDTI ATGAA 5 cut(s) 152, 180, 348, 673, 858
TspGWI ACGGA 1 cut(s) 809
TspRI CASTG 2 cut(s) 645, 822
Tth111I GACNNNGTC 1 cut(s) 1328
Van91I CCANNNNNTGG 1 cut(s) 88
Vha464I CTTAAG 1 cut(s) 440
XagI CCTNNNNNAGG 1 cut(s) 1003
XapI RAATTY 1 cut(s) 434
XmiI GTMKAC 1 cut(s) 1467
XmnI GAANNNNTTC 2 cut(s) 171, 1078
XspI CTAG 2 cut(s) 236, 516
Zsp2I ATGCAT 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.