Rmu_sc0010329.1_g000001

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010329.1
OG0000950
Physical Location & Seq
Reverse (-)
1628 .. 4212
2585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010329.1_g000001.1.cds

Sequence Viewer

Length: 1470 bp
atgtggaagctcttcagttcagtaagaaagtggatcagaaactccctctacttttccaaggctactttatgcatccgggggttggttttcagtcagagctttgtaggccgtgcggtatcgtccatcttgatcacgtacctcgtacttcatattttgaagaactatcaaatggctgcggcacttataaatttgatagttggggcagcatccgtcatggtcatcgtccttgcttatctatcacacagaataggtcattttagaatggttgtctccgcaagttttgcctatactcttgcactggctctattatggatttcagccaagtttatacgtcagggcgcagatgcagtagataattttttctattgggccgcggtactattggcaatagctggcgctggaatggatgctgttatacctaaatttcttgacgatcaatacacaagtgaacagagaggaagagatcatgaatacacaatagaagaagaagaacgattccaaagccgcaaagatgctttgtggagccatccctggtttttcggtgcagtggcagctcttttcattcctggagaggcacattggaaaactgtcttcctgatttcaatgattgcaatgggggtttgttttttattgttctggtttggcaaatccttttattcagtgtcatcttcagtagaaacagcaccaagagggaagtttggggtcacactgaaagaaaatggacaccgttatgcagaaatgttggctatgagctttgccttcattgcatacagtctggtggaggcaacaggatccacgttcttttttgaacaaacaactttcttggatgatcatgtcggaaaattcacagttcctgtcgtatatctcactgtacttcagtctttttcaaagttcataatcccacatctttgggggctactaattccaaagcagcgaagaagtgttgcattggttaaaattgggtgcggtttggttctttctgttttatgctgtgtcattgcttggcgaattgagattcgtaggtcgagtaaaatcaaggtggaagttgaccttgaagattacaaaccaattatttccatgagcatcctttggttacttccacaattctctctgcttgggctcatgagagggttagctgaagacggattggtcgagttttttgcagaacaagtggttgacgatgataaacaagcggtgcttaggtactatggacctcacgtattttcctttgtcctgggtattggaacactactgaccgctgttagtattttgggttttagacgaacttggttggatgatgatatatataagaatcgtctagataagtattacaggggattagtattcctaggtgttgctaaccttggctactacttgtgtatcgccctatacttttacaaaaagcatggatcacaaatttctgctgaagaaacaaatgatgaagaaacaaaaagtaaggaagagatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

489

Amino Acids

55.52

Weight (kDa)

8.67

Isoelectric Point (pI)

33.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 185
AasI GACNNNNNNGTC 1 cut(s) 1148
AccII CGCG 1 cut(s) 374
AciI CCGC 9 cut(s) 113, 176, 273, 372, 374, 505, 966, 1193, 1257
AclWI GGATC 4 cut(s) 41, 786, 799, 1417
AcsI RAATTY 4 cut(s) 187, 422, 842, 1416
AcuI CTGAAG 4 cut(s) 654, 860, 1158, 1446
AfaI GTAC 5 cut(s) 137, 144, 378, 873, 1205
AfiI CCNNNNNNNGG 1 cut(s) 82
AgsI TTSAA 5 cut(s) 157, 603, 809, 888, 1055
AjnI CCWGG 3 cut(s) 530, 565, 1233
AluBI AGCT 6 cut(s) 10, 99, 392, 554, 753, 1136
AluI AGCT 6 cut(s) 10, 99, 392, 554, 753, 1136
Alw26I GTCTC 1 cut(s) 274
AlwI GGATC 4 cut(s) 41, 786, 799, 1417
AlwNI CAGNNNCTG 1 cut(s) 854
AoxI GGCC 2 cut(s) 106, 369
ApeKI GCWGC 4 cut(s) 173, 203, 551, 931
ApoI RAATTY 4 cut(s) 187, 422, 842, 1416
Asp700I GAANNNNTTC 1 cut(s) 11
AspA2I CCTAGG 1 cut(s) 1348
AspLEI GCGC 2 cut(s) 341, 398
AspS9I GGNCC 2 cut(s) 369, 1211
AsuC2I CCSGG 1 cut(s) 77
AvaII GGWCC 1 cut(s) 1211
AvrII CCTAGG 1 cut(s) 1348
BaeI ACNNNNGTAYC 2 cut(s) 1363, 1396
BamHI GGATCC 1 cut(s) 791
BanII GRGCYC 1 cut(s) 1122
BbsI GAAGAC 2 cut(s) 583, 1146
BbvI GCAGC 4 cut(s) 160, 215, 563, 943
BccI CCATC 2 cut(s) 131, 534
BceAI ACGGC 1 cut(s) 93
BcgI CGANNNNNNTGC 2 cut(s) 1142, 1176
BciT130I CCWGG 3 cut(s) 532, 567, 1235
BclI TGATCA 2 cut(s) 129, 829
BcnI CCSGG 1 cut(s) 77
BcoDI GTCTC 1 cut(s) 274
BfaI CTAG 2 cut(s) 1319, 1349
BfoI RGCGCY 1 cut(s) 399
BisI GCNGC 7 cut(s) 174, 177, 204, 372, 505, 552, 932
BlnI CCTAGG 1 cut(s) 1348
BlsI GCNGC 7 cut(s) 175, 178, 205, 373, 506, 553, 933
Bme1390I CCNGG 4 cut(s) 77, 532, 567, 1235
Bme18I GGWCC 1 cut(s) 1211
BmgT120I GGNCC 2 cut(s) 369, 1211
BmiI GGNNCC 2 cut(s) 524, 793
BmrFI CCNGG 4 cut(s) 77, 532, 567, 1235
BmsI GCATC 6 cut(s) 81, 215, 334, 397, 502, 1092
BpiI GAAGAC 2 cut(s) 583, 1146
BpmI CTGGAG 1 cut(s) 588
Bpu10I CCTNAGC 1 cut(s) 1199
BpuMI CCSGG 1 cut(s) 77
BsaAI YACGTR 2 cut(s) 135, 1219
BsaJI CCNNGG 7 cut(s) 57, 76, 372, 530, 1234, 1348, 1363
Bsc4I CCNNNNNNNGG 1 cut(s) 82
Bse1I ACTGG 1 cut(s) 303
Bse3DI GCAATG 3 cut(s) 618, 762, 996
BseBI CCWGG 3 cut(s) 532, 567, 1235
BseDI CCNNGG 7 cut(s) 57, 76, 372, 530, 1234, 1348, 1363
BseGI GGATG 7 cut(s) 72, 206, 412, 526, 832, 1083, 1300
BseLI CCNNNNNNNGG 1 cut(s) 82
BseMI GCAATG 3 cut(s) 618, 762, 996
BseNI ACTGG 1 cut(s) 303
BseXI GCAGC 4 cut(s) 160, 215, 563, 943
BsgI GTGCAG 1 cut(s) 564
Bsh1236I CGCG 1 cut(s) 374
BshFI GGCC 2 cut(s) 108, 371
BsiSI CCGG 1 cut(s) 76
BslI CCNNNNNNNGG 1 cut(s) 82
BsmAI GTCTC 1 cut(s) 274
BsnI GGCC 2 cut(s) 108, 371
Bsp1286I GDGCHC 1 cut(s) 1122
Bsp143I GATC 7 cut(s) 33, 129, 433, 463, 791, 829, 1409
BspACI CCGC 9 cut(s) 113, 176, 273, 372, 374, 505, 966, 1193, 1257
BspANI GGCC 2 cut(s) 108, 371
BspFNI CGCG 1 cut(s) 374
BspHI TCATGA 2 cut(s) 466, 1122
BspLI GGNNCC 2 cut(s) 524, 793
BspPI GGATC 4 cut(s) 41, 786, 799, 1417
BspQI GCTCTTC 1 cut(s) 17
BsrDI GCAATG 3 cut(s) 618, 762, 996
BsrI ACTGG 1 cut(s) 303
BssECI CCNNGG 7 cut(s) 57, 76, 372, 530, 1234, 1348, 1363
BssMI GATC 7 cut(s) 33, 129, 433, 463, 791, 829, 1409
BssT1I CCWWGG 3 cut(s) 57, 1348, 1363
Bst2UI CCWGG 3 cut(s) 532, 567, 1235
Bst4CI ACNGT 5 cut(s) 589, 728, 773, 850, 871
Bst6I CTCTTC 3 cut(s) 17, 454, 1455
BstAPI GCANNNNNTGC 1 cut(s) 281
BstBAI YACGTR 2 cut(s) 135, 1219
BstC8I GCNNGC 1 cut(s) 394
BstDEI CTNAG 1 cut(s) 1199
BstDSI CCRYGG 1 cut(s) 372
BstF5I GGATG 7 cut(s) 72, 206, 412, 526, 832, 1083, 1300
BstFNI CGCG 1 cut(s) 374
BstH2I RGCGCY 1 cut(s) 399
BstHHI GCGC 2 cut(s) 341, 398
BstKTI GATC 7 cut(s) 36, 132, 436, 466, 794, 832, 1412
BstMAI GTCTC 1 cut(s) 274
BstMBI GATC 7 cut(s) 33, 129, 433, 463, 791, 829, 1409
BstMWI GCNNNNNNNGC 4 cut(s) 105, 281, 551, 764
BstNI CCWGG 3 cut(s) 532, 567, 1235
BstSCI CCNGG 4 cut(s) 75, 530, 565, 1233
BstUI CGCG 1 cut(s) 374
BstV1I GCAGC 4 cut(s) 160, 215, 563, 943
BstV2I GAAGAC 2 cut(s) 583, 1146
BstX2I RGATCY 1 cut(s) 791
BstXI CCANNNNNNTGG 1 cut(s) 909
BstYI RGATCY 1 cut(s) 791
BsuRI GGCC 2 cut(s) 108, 371
BtgI CCRYGG 1 cut(s) 372
BtsCI GGATG 7 cut(s) 72, 206, 412, 526, 832, 1083, 1300
BtsI GCAGTG 1 cut(s) 552
BtsIMutI CAGTG 5 cut(s) 296, 552, 666, 707, 867
Cac8I GCNNGC 1 cut(s) 394
CaiI CAGNNNCTG 1 cut(s) 854
CciI TCATGA 2 cut(s) 466, 1122
CfoI GCGC 2 cut(s) 341, 398
Cfr13I GGNCC 2 cut(s) 369, 1211
Cfr42I CCGCGG 1 cut(s) 375
Csp6I GTAC 5 cut(s) 136, 143, 377, 872, 1204
CviAII CATG 6 cut(s) 214, 467, 833, 1078, 1123, 1406
CviQI GTAC 5 cut(s) 136, 143, 377, 872, 1204
DdeI CTNAG 1 cut(s) 1199
DpnI GATC 7 cut(s) 35, 131, 435, 465, 793, 831, 1411
DpnII GATC 7 cut(s) 33, 129, 433, 463, 791, 829, 1409
DrdI GACNNNNNNGTC 1 cut(s) 1148
DseDI GACNNNNNNGTC 1 cut(s) 1148
Eam1104I CTCTTC 3 cut(s) 17, 454, 1455
EarI CTCTTC 3 cut(s) 17, 454, 1455
Eco130I CCWWGG 3 cut(s) 57, 1348, 1363
Eco24I GRGCYC 1 cut(s) 1122
Eco47I GGWCC 1 cut(s) 1211
Eco57I CTGAAG 4 cut(s) 654, 860, 1158, 1446
EcoRII CCWGG 3 cut(s) 530, 565, 1233
EcoT14I CCWWGG 3 cut(s) 57, 1348, 1363
EcoT22I ATGCAT 1 cut(s) 74
EcoT38I GRGCYC 1 cut(s) 1122
ErhI CCWWGG 3 cut(s) 57, 1348, 1363
FaeI CATG 6 cut(s) 217, 470, 836, 1081, 1126, 1409
FalI AAGNNNNNCTT 4 cut(s) 1035, 1067, 1182, 1214
FatI CATG 6 cut(s) 213, 466, 832, 1077, 1122, 1405
FbaI TGATCA 2 cut(s) 129, 829
Fnu4HI GCNGC 7 cut(s) 174, 177, 204, 372, 505, 552, 932
FokI GGATG 7 cut(s) 59, 193, 419, 513, 839, 1070, 1307
FriOI GRGCYC 1 cut(s) 1122
Fsp4HI GCNGC 7 cut(s) 174, 177, 204, 372, 505, 552, 932
FspBI CTAG 2 cut(s) 1319, 1349
GlaI GCGC 2 cut(s) 340, 397
GluI GCNGC 7 cut(s) 174, 177, 204, 372, 505, 552, 932
GsuI CTGGAG 1 cut(s) 588
HaeII RGCGCY 1 cut(s) 399
HaeIII GGCC 2 cut(s) 108, 371
HapII CCGG 1 cut(s) 76
HhaI GCGC 2 cut(s) 341, 398
Hin1II CATG 6 cut(s) 217, 470, 836, 1081, 1126, 1409
Hin6I GCGC 2 cut(s) 339, 396
HinP1I GCGC 2 cut(s) 339, 396
HincII GTYRAC 2 cut(s) 1048, 1177
HindII GTYRAC 2 cut(s) 1048, 1177
HinfI GANTC 3 cut(s) 495, 1015, 1312
HpaII CCGG 1 cut(s) 76
Hpy166II GTNNAC 3 cut(s) 449, 1048, 1177
Hpy188I TCNGA 3 cut(s) 38, 96, 839
Hpy188III TCNNGA 6 cut(s) 127, 428, 467, 595, 1123, 1319
Hpy8I GTNNAC 3 cut(s) 449, 1048, 1177
HpyAV CCTTC 1 cut(s) 769
HpyCH4III ACNGT 5 cut(s) 589, 728, 773, 850, 871
HpyCH4IV ACGT 4 cut(s) 134, 331, 797, 1218
HpyCH4V TGCA 9 cut(s) 72, 296, 347, 545, 611, 734, 767, 947, 1163
HpyF10VI GCNNNNNNNGC 4 cut(s) 105, 281, 551, 764
HpyF3I CTNAG 1 cut(s) 1199
HpySE526I ACGT 4 cut(s) 134, 331, 797, 1218
Hsp92II CATG 6 cut(s) 217, 470, 836, 1081, 1126, 1409
HspAI GCGC 2 cut(s) 339, 396
Ksp22I TGATCA 2 cut(s) 129, 829
KspI CCGCGG 1 cut(s) 375
Kzo9I GATC 7 cut(s) 33, 129, 433, 463, 791, 829, 1409
LguI GCTCTTC 1 cut(s) 17
LmnI GCTCC 1 cut(s) 522
Lsp1109I GCAGC 4 cut(s) 160, 215, 563, 943
LweI GCATC 6 cut(s) 81, 215, 334, 397, 502, 1092
MaeI CTAG 2 cut(s) 1319, 1349
MaeII ACGT 4 cut(s) 134, 331, 797, 1218
MaeIII GTNAC 2 cut(s) 703, 1092
MalI GATC 7 cut(s) 35, 131, 435, 465, 793, 831, 1411
MboI GATC 7 cut(s) 33, 129, 433, 463, 791, 829, 1409
MflI RGATCY 1 cut(s) 791
MhlI GDGCHC 1 cut(s) 1122
MmeI TCCRAC 2 cut(s) 817, 1272
MnlI CCTC 8 cut(s) 56, 149, 449, 565, 683, 775, 1121, 1224
Mph1103I ATGCAT 1 cut(s) 74
MroXI GAANNNNTTC 1 cut(s) 11
MseI TTAA 1 cut(s) 954
MslI CAYNNNNRTG 1 cut(s) 729
MspA1I CMGCKG 2 cut(s) 374, 1259
MspI CCGG 1 cut(s) 76
MspR9I CCNGG 4 cut(s) 77, 532, 567, 1235
MvaI CCWGG 3 cut(s) 532, 567, 1235
MvnI CGCG 1 cut(s) 374
MwoI GCNNNNNNNGC 4 cut(s) 105, 281, 551, 764
NciI CCSGG 1 cut(s) 77
NdeII GATC 7 cut(s) 33, 129, 433, 463, 791, 829, 1409
NlaIII CATG 6 cut(s) 217, 470, 836, 1081, 1126, 1409
NlaIV GGNNCC 2 cut(s) 524, 793
NmuCI GTSAC 1 cut(s) 703
NsiI ATGCAT 1 cut(s) 74
PagI TCATGA 2 cut(s) 466, 1122
PciSI GCTCTTC 1 cut(s) 17
PcsI WCGNNNNNNNCGW 1 cut(s) 1149
PdmI GAANNNNTTC 1 cut(s) 11
PfeI GAWTC 3 cut(s) 495, 1015, 1312
PfoI TCCNGGA 1 cut(s) 565
PkrI GCNGC 7 cut(s) 175, 178, 205, 373, 506, 553, 933
Ppu21I YACGTR 2 cut(s) 135, 1219
PsiI TTATAA 1 cut(s) 185
Psp6I CCWGG 3 cut(s) 530, 565, 1233
PspGI CCWGG 3 cut(s) 530, 565, 1233
PspN4I GGNNCC 2 cut(s) 524, 793
PspPI GGNCC 2 cut(s) 369, 1211
PstNI CAGNNNCTG 1 cut(s) 854
PsuI RGATCY 1 cut(s) 791
RsaI GTAC 5 cut(s) 137, 144, 378, 873, 1205
RsaNI GTAC 5 cut(s) 136, 143, 377, 872, 1204
RseI CAYNNNNRTG 1 cut(s) 729
SacII CCGCGG 1 cut(s) 375
SapI GCTCTTC 1 cut(s) 17
SaqAI TTAA 1 cut(s) 954
SatI GCNGC 7 cut(s) 174, 177, 204, 372, 505, 552, 932
Sau3AI GATC 7 cut(s) 33, 129, 433, 463, 791, 829, 1409
Sau96I GGNCC 2 cut(s) 369, 1211
ScrFI CCNGG 4 cut(s) 77, 532, 567, 1235
SduI GDGCHC 1 cut(s) 1122
SfaNI GCATC 6 cut(s) 81, 215, 334, 397, 502, 1092
Sfr303I CCGCGG 1 cut(s) 375
SgrBI CCGCGG 1 cut(s) 375
SinI GGWCC 1 cut(s) 1211
SmiMI CAYNNNNRTG 1 cut(s) 729
SsiI CCGC 9 cut(s) 113, 176, 273, 372, 374, 505, 966, 1193, 1257
SspMI CTAG 2 cut(s) 1319, 1349
StyD4I CCNGG 4 cut(s) 75, 530, 565, 1233
StyI CCWWGG 3 cut(s) 57, 1348, 1363
TaaI ACNGT 5 cut(s) 589, 728, 773, 850, 871
TaiI ACGT 4 cut(s) 137, 334, 800, 1221
TaqI TCGA 2 cut(s) 1025, 1152
TatI WGTACW 1 cut(s) 871
TauI GCSGC 3 cut(s) 179, 374, 507
TfiI GAWTC 3 cut(s) 495, 1015, 1312
Tru1I TTAA 1 cut(s) 954
Tru9I TTAA 1 cut(s) 954
TscAI CASTG 5 cut(s) 303, 552, 666, 714, 874
TseFI GTSAC 1 cut(s) 703
TseI GCWGC 4 cut(s) 173, 203, 551, 931
Tsp45I GTSAC 1 cut(s) 703
TspDTI ATGAA 6 cut(s) 137, 483, 550, 751, 883, 1455
TspGWI ACGGA 2 cut(s) 199, 1158
TspRI CASTG 5 cut(s) 303, 552, 666, 714, 874
VpaK11BI GGWCC 1 cut(s) 1211
XapI RAATTY 4 cut(s) 187, 422, 842, 1416
XbaI TCTAGA 1 cut(s) 1318
XmaJI CCTAGG 1 cut(s) 1348
XmnI GAANNNNTTC 1 cut(s) 11
XspI CTAG 2 cut(s) 1319, 1349
Zsp2I ATGCAT 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.