Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0000950

Physical Location & Seq

Genomic Coordinates Forward (+)

55493097 .. 55501725

Gene Structure 8629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG244600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGGGAGAGTGAAAGAGTGGTTTGGAAAGTACTTGTACTTTTCCAAAGCTACATGTATTCGAGGATTAATTTTCAGCCACAGCCTCGTAAACCATGCGATAGTGTCTATCTTGATAATGTACCTCACTGTTAAGTGGCAGAATCAACATTTTCAAATAGCTGCTGTTGCTGCTGTAGTTACAAATGTGCAAGAAGGGTTTTCAGACATCTTGGTGATCATCTTAGCTCATTTCTCGCGTACATACAGGAGTTCTTATAATATAATTGTCACCACAAACGCTGCCTATATTGTTGGACTGGCTACACTGTGGCGTTCTGCTGAGCATATGACCGCAGATACAGCTGCCAAGGTATACTATGGTGCTGTGTTACTGCTGACATTGGGCGAAGCAGGGCGGTCGGCTGCCTTGAATGAATTTCTTGACGAGCAATATTCAAGGGAACGGGACCAAACAGAAATCATAGACGATGAAAAACTGCAAGACCGTCAAGAAGCTTTATGGGGTCTTCCCTGGTTGTTGGGTGCAGTCGTACCGCTTTTCCTTGTAAAAACAACTTGGGAACAAATTTTCATGATTTCAACAATTGTGATGGGAGTTTTTTACTTAATCTTCTATTGTGGCTACTCCTTTTATTTCATAAATTATATTGAAGAGACCATGTATCCTATAGAAGAAGCAGAAATTAAGGGAGGAGAGTGGCACAGACATAAAAGTGAACAACTTGGAACCAGTACAAAGGCAGAAAATTTGCCTAGACAAAGAGGAGCTCCCAGAACCAGCAAGAGGGAATATTTGGAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

268

Amino Acids

30.84

Weight (kDa)

6.18

Isoelectric Point (pI)

36.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000950)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18590
malus_domestica	MD13G1165300.v1.1 MD13G1165400.v1.1
prunus_persica	Prupe.1G124400_v2.0.a1 Prupe.1G124400_v2.0.a1 Prupe.1G124400_v2.0.a1 Prupe.1G124600_v2.0.a1 Prupe.1G124900_v2.0.a1 Prupe.1G125000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0477071 RchiOBHm_Chr3g0477161 RchiOBHm_Chr4g0387871 RchiOBHm_Chr4g0405251 RchiOBHm_Chr4g0422731
rosa_laevigata	RLG00000007575 RLG00000007576 RLG00000010048 RLG00000023495
rosa_multiflora	Rmu_sc0000288.1_g000003 Rmu_sc0000311.1_g000011 Rmu_sc0000932.1_g000003 Rmu_sc0002038.1_g000019 Rmu_sc0002509.1_g000023 Rmu_sc0010329.1_g000001 Rmu_sc0012115.1_g000003
rosa_roxburghii	Rroxscaffold_5G00334470 Rroxscaffold_5G00349590 Rroxscaffold_5G00365230 Rroxscaffold_5G00365400 Rroxscaffold_6G00401580 Rroxscaffold_6G00404380 Rroxscaffold_6G00404870
rosa_rugosa	Rorug03G0182100.1 Rorug04G0185200 Rorug04G0185300 Rorug04G0185400
rosa_samantha	Rh3AG208700 Rh3AG233900 Rh3AG234000 Rh3BG241900 Rh3BG242300 Rh3BG266200 Rh3CG236300 Rh3CG236400 Rh3CG263900 Rh3DG235200 Rh3DG259300 Rh4AG019100 Rh4AG130000 Rh4AG241000 Rh4AG244600 Rh4AG245300 Rh4BG124300 Rh4BG244300 Rh4BG249800 Rh4BG250500 Rh4CG255100 Rh4DG123600 Rh4DG239700 Rh4DG244900
rosa_wichuraiana	Rw3G019030 Rw3G021020 Rw4G010520 Rw4G021070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	258
AccI	GTMKAC	1 cut(s)	354
AccII	CGCG	1 cut(s)	238
AciI	CCGC	3 cut(s)	333, 397, 536
AcsI	RAATTY	3 cut(s)	416, 567, 748
AfaI	GTAC	6 cut(s)	32, 38, 122, 241, 534, 736
AfiI	CCNNNNNNNGG	1 cut(s)	786
AflIII	ACRYGT	1 cut(s)	53
AgsI	TTSAA	5 cut(s)	155, 412, 438, 582, 653
AjnI	CCWGG	1 cut(s)	512
AluBI	AGCT	6 cut(s)	50, 161, 227, 344, 497, 770
AluI	AGCT	6 cut(s)	50, 161, 227, 344, 497, 770
Alw21I	GWGCWC	1 cut(s)	772
Alw26I	GTCTC	1 cut(s)	650
ApeKI	GCWGC	5 cut(s)	161, 170, 281, 344, 404
ApoI	RAATTY	3 cut(s)	416, 567, 748
AseI	ATTAAT	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	448
AsuHPI	GGTGA	2 cut(s)	226, 262
AvaII	GGWCC	1 cut(s)	448
BanII	GRGCYC	1 cut(s)	772
BbsI	GAAGAC	1 cut(s)	500
Bbv12I	GWGCWC	1 cut(s)	772
BbvI	GCAGC	5 cut(s)	148, 157, 268, 331, 391
BccI	CCATC	1 cut(s)	586
BcgI	CGANNNNNNTGC	2 cut(s)	381, 415
BciT130I	CCWGG	1 cut(s)	514
BciVI	GTATCC	1 cut(s)	675
BclI	TGATCA	1 cut(s)	216
BcoDI	GTCTC	1 cut(s)	650
BfaI	CTAG	1 cut(s)	756
BfmI	CTRYAG	2 cut(s)	174, 669
BfuI	GTATCC	1 cut(s)	675
BisI	GCNGC	5 cut(s)	162, 171, 282, 345, 405
BlpI	GCTNAGC	1 cut(s)	321
BlsI	GCNGC	5 cut(s)	163, 172, 283, 346, 406
BmcAI	AGTACT	1 cut(s)	32
Bme1390I	CCNGG	1 cut(s)	514
Bme18I	GGWCC	1 cut(s)	448
BmgT120I	GGNCC	1 cut(s)	448
BmiI	GGNNCC	2 cut(s)	449, 730
BmrFI	CCNGG	1 cut(s)	514
BpiI	GAAGAC	1 cut(s)	500
Bpu1102I	GCTNAGC	1 cut(s)	321
BsaI	GGTCTC	1 cut(s)	650
BsaJI	CCNNGG	2 cut(s)	348, 512
Bsc4I	CCNNNNNNNGG	1 cut(s)	786
Bse1I	ACTGG	2 cut(s)	303, 732
BseBI	CCWGG	1 cut(s)	514
BseDI	CCNNGG	2 cut(s)	348, 512
BseLI	CCNNNNNNNGG	1 cut(s)	786
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	2 cut(s)	303, 732
BseRI	GAGGAG	2 cut(s)	708, 780
BseXI	GCAGC	5 cut(s)	148, 157, 268, 331, 391
BsgI	GTGCAG	1 cut(s)	546
Bsh1236I	CGCG	1 cut(s)	238
Bsh1285I	CGRYCG	1 cut(s)	401
BsiEI	CGRYCG	1 cut(s)	401
BsiHKAI	GWGCWC	1 cut(s)	772
BslFI	GGGAC	1 cut(s)	461
BslI	CCNNNNNNNGG	1 cut(s)	786
BsmAI	GTCTC	1 cut(s)	650
BsmFI	GGGAC	1 cut(s)	461
Bso31I	GGTCTC	1 cut(s)	650
Bsp1286I	GDGCHC	1 cut(s)	772
Bsp143I	GATC	1 cut(s)	216
Bsp1720I	GCTNAGC	1 cut(s)	321
BspACI	CCGC	3 cut(s)	333, 397, 536
BspCNI	CTCAG	1 cut(s)	313
BspFNI	CGCG	1 cut(s)	238
BspHI	TCATGA	1 cut(s)	573
BspLI	GGNNCC	2 cut(s)	449, 730
BspTNI	GGTCTC	1 cut(s)	650
BsrI	ACTGG	2 cut(s)	303, 732
BssECI	CCNNGG	2 cut(s)	348, 512
BssMI	GATC	1 cut(s)	216
BssNAI	GTATAC	1 cut(s)	355
BssT1I	CCWWGG	1 cut(s)	348
Bst1107I	GTATAC	1 cut(s)	355
Bst2UI	CCWGG	1 cut(s)	514
Bst4CI	ACNGT	3 cut(s)	130, 309, 488
Bst6I	CTCTTC	1 cut(s)	648
BstDEI	CTNAG	2 cut(s)	223, 321
BstFNI	CGCG	1 cut(s)	238
BstKTI	GATC	1 cut(s)	219
BstMAI	GTCTC	1 cut(s)	650
BstMBI	GATC	1 cut(s)	216
BstMCI	CGRYCG	1 cut(s)	401
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 170, 341
BstNI	CCWGG	1 cut(s)	514
BstNSI	RCATGY	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	512
BstSFI	CTRYAG	2 cut(s)	174, 669
BstUI	CGCG	1 cut(s)	238
BstV1I	GCAGC	5 cut(s)	148, 157, 268, 331, 391
BstV2I	GAAGAC	1 cut(s)	500
BstZ17I	GTATAC	1 cut(s)	355
BsuI	GTATCC	1 cut(s)	675
BtsIMutI	CAGTG	2 cut(s)	126, 305
CciI	TCATGA	1 cut(s)	573
Cfr13I	GGNCC	1 cut(s)	448
Csp6I	GTAC	6 cut(s)	31, 37, 121, 240, 533, 735
CviAII	CATG	4 cut(s)	54, 95, 574, 661
CviQI	GTAC	6 cut(s)	31, 37, 121, 240, 533, 735
DdeI	CTNAG	2 cut(s)	223, 321
DpnI	GATC	1 cut(s)	218
DpnII	GATC	1 cut(s)	216
Eam1104I	CTCTTC	1 cut(s)	648
EarI	CTCTTC	1 cut(s)	648
Ecl136II	GAGCTC	1 cut(s)	770
Eco130I	CCWWGG	1 cut(s)	348
Eco24I	GRGCYC	1 cut(s)	772
Eco31I	GGTCTC	1 cut(s)	650
Eco47I	GGWCC	1 cut(s)	448
Eco53kI	GAGCTC	1 cut(s)	770
EcoICRI	GAGCTC	1 cut(s)	770
EcoRII	CCWGG	1 cut(s)	512
EcoT14I	CCWWGG	1 cut(s)	348
EcoT38I	GRGCYC	1 cut(s)	772
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	4 cut(s)	57, 98, 577, 664
FaqI	GGGAC	1 cut(s)	461
FatI	CATG	4 cut(s)	53, 94, 573, 660
FauNDI	CATATG	1 cut(s)	327
FbaI	TGATCA	1 cut(s)	216
FblI	GTMKAC	1 cut(s)	354
Fnu4HI	GCNGC	5 cut(s)	162, 171, 282, 345, 405
FriOI	GRGCYC	1 cut(s)	772
Fsp4HI	GCNGC	5 cut(s)	162, 171, 282, 345, 405
FspBI	CTAG	1 cut(s)	756
GluI	GCNGC	5 cut(s)	162, 171, 282, 345, 405
Hin1II	CATG	4 cut(s)	57, 98, 577, 664
HindIII	AAGCTT	1 cut(s)	495
HinfI	GANTC	1 cut(s)	142
HphI	GGTGA	2 cut(s)	226, 262
Hpy166II	GTNNAC	3 cut(s)	91, 355, 719
Hpy188I	TCNGA	1 cut(s)	205
Hpy188III	TCNNGA	4 cut(s)	112, 422, 491, 574
Hpy8I	GTNNAC	3 cut(s)	91, 355, 719
HpyAV	CCTTC	1 cut(s)	188
HpyCH4III	ACNGT	3 cut(s)	130, 309, 488
HpyCH4V	TGCA	3 cut(s)	190, 481, 527
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 170, 341
HpyF3I	CTNAG	2 cut(s)	223, 321
Hsp92II	CATG	4 cut(s)	57, 98, 577, 664
Ksp22I	TGATCA	1 cut(s)	216
Kzo9I	GATC	1 cut(s)	216
LmnI	GCTCC	2 cut(s)	767, 775
LpnPI	CCDG	8 cut(s)	232, 284, 378, 499, 526, 745, 787, 793
Lsp1109I	GCAGC	5 cut(s)	148, 157, 268, 331, 391
MaeI	CTAG	1 cut(s)	756
MaeIII	GTNAC	3 cut(s)	178, 268, 369
MalI	GATC	1 cut(s)	218
MboI	GATC	1 cut(s)	216
MboII	GAAGA	4 cut(s)	500, 604, 665, 686
MfeI	CAATTG	1 cut(s)	585
MhlI	GDGCHC	1 cut(s)	772
MluCI	AATT	8 cut(s)	69, 264, 416, 567, 585, 643, 684, 748
MmeI	TCCRAC	1 cut(s)	274
MnlI	CCTC	6 cut(s)	56, 95, 134, 686, 758, 780
MseI	TTAA	5 cut(s)	68, 132, 608, 687, 805
MslI	CAYNNNNRTG	2 cut(s)	212, 714
MspA1I	CMGCKG	1 cut(s)	344
MspR9I	CCNGG	1 cut(s)	514
MunI	CAATTG	1 cut(s)	585
MvaI	CCWGG	1 cut(s)	514
MvnI	CGCG	1 cut(s)	238
MwoI	GCNNNNNNNGC	3 cut(s)	167, 170, 341
NdeI	CATATG	1 cut(s)	327
NdeII	GATC	1 cut(s)	216
NlaIII	CATG	4 cut(s)	57, 98, 577, 664
NlaIV	GGNNCC	2 cut(s)	449, 730
NmuCI	GTSAC	1 cut(s)	268
NspI	RCATGY	1 cut(s)	57
PagI	TCATGA	1 cut(s)	573
PciI	ACATGT	1 cut(s)	53
PfeI	GAWTC	1 cut(s)	142
PkrI	GCNGC	5 cut(s)	163, 172, 283, 346, 406
PscI	ACATGT	1 cut(s)	53
PshBI	ATTAAT	1 cut(s)	68
PsiI	TTATAA	1 cut(s)	258
Psp124BI	GAGCTC	1 cut(s)	772
Psp6I	CCWGG	1 cut(s)	512
PspGI	CCWGG	1 cut(s)	512
PspN4I	GGNNCC	2 cut(s)	449, 730
PspPI	GGNCC	1 cut(s)	448
PvuII	CAGCTG	1 cut(s)	344
RsaI	GTAC	6 cut(s)	32, 38, 122, 241, 534, 736
RsaNI	GTAC	6 cut(s)	31, 37, 121, 240, 533, 735
RseI	CAYNNNNRTG	2 cut(s)	212, 714
SacI	GAGCTC	1 cut(s)	772
SaqAI	TTAA	5 cut(s)	68, 132, 608, 687, 805
SatI	GCNGC	5 cut(s)	162, 171, 282, 345, 405
Sau3AI	GATC	1 cut(s)	216
Sau96I	GGNCC	1 cut(s)	448
ScaI	AGTACT	1 cut(s)	32
ScrFI	CCNGG	1 cut(s)	514
SduI	GDGCHC	1 cut(s)	772
SetI	ASST	8 cut(s)	52, 126, 163, 229, 346, 354, 499, 772
SfcI	CTRYAG	2 cut(s)	174, 669
SinI	GGWCC	1 cut(s)	448
SmiMI	CAYNNNNRTG	2 cut(s)	212, 714
Sse9I	AATT	8 cut(s)	69, 264, 416, 567, 585, 643, 684, 748
SsiI	CCGC	3 cut(s)	333, 397, 536
SspI	AATATT	2 cut(s)	434, 794
SspMI	CTAG	1 cut(s)	756
SstI	GAGCTC	1 cut(s)	772
StyD4I	CCNGG	1 cut(s)	512
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	3 cut(s)	130, 309, 488
TaqI	TCGA	1 cut(s)	61
TasI	AATT	8 cut(s)	69, 264, 416, 567, 585, 643, 684, 748
TatI	WGTACW	3 cut(s)	30, 36, 734
TfiI	GAWTC	1 cut(s)	142
Tru1I	TTAA	5 cut(s)	68, 132, 608, 687, 805
Tru9I	TTAA	5 cut(s)	68, 132, 608, 687, 805
TscAI	CASTG	2 cut(s)	133, 312
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	5 cut(s)	161, 170, 281, 344, 404
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	4 cut(s)	429, 486, 562, 628
TspRI	CASTG	2 cut(s)	133, 312
VpaK11BI	GGWCC	1 cut(s)	448
VspI	ATTAAT	1 cut(s)	68
XapI	RAATTY	3 cut(s)	416, 567, 748
XceI	RCATGY	1 cut(s)	57
XmiI	GTMKAC	1 cut(s)	354
XspI	CTAG	1 cut(s)	756
ZrmI	AGTACT	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.