RchiOBHm_Chr4g0422731

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000950
Physical Location & Seq
Forward (+)
48349274 .. 48350958
1685 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39217

Sequence Viewer

Length: 1281 bp
ATGATCCACTACTTCATTTCTTTTGGACTAGTTATATTGTGGAGTTCATACAATTATGCGGGCTCCGAATCGAATGCATCTGATAAAATATTCTACGGAGCCGGCTTACTGTTAGCACTAGGCGAGGCTGGACGGCCGGCTGCTTTGGGTAAATTTCTCGAGGACCAATATTTAAGTGAAGCAGATCACAAGAACAAATTACCCGAAACAAGAATAAGTACTGAAGAAGAAAATTATATTTCGACCAGAAAGGAAGAACAAGAAGATCCTAGTTCAATCAGTAGAGAAGAAGATGACAAGCAGAAGCGAAAACGTGTGGAAACCCGTCAAGCCGCTTTGTGGAGCCATCCCTGGTTCATAGGTGCGGCTGCACCTCTTGCCCTTGTAAATAGATCTTGGCCAACTCAACTACTGCTCTCAATGATCGCGGTGGGAGTTTCTTACTTATTGTTCTGGTATGGCGTCTTCGCGTATTCCAGAAATATTAGAAATGAATCAAATGATCCAGCAGGAAGAGATACTGGACTTTGCCCAGCCATCAAAAGTCTCTCACCATCAGAAGAAACAGCAAGCTGGAAGTCTCGGCTCAAACCCAATATTTCCAGAAAACAAATGCTAGTCATGTGCTTAGCCTTCATTGTATACAGTCTGGTGGAGGCAACAGGGAACACCTTCTTTTTCGATCAAATGAATCTACTGGACTATCACATCGGGAACTTTGAAGTGCCCATCATATATTTCGTTATACTCGAATCCTTGTCAAGCTCCGTAATCTCATTTCTCTGGAGGTTACTAGTTCCAAATCAGTCAAAAAGTGCTACGTTGGTCAGGATCGGCTGTGGTTTAGTTTGCTCTGTGCTATGTATGGTTGCTGCTTGGCAAGTTGAGATTCGTAGGAAAATTAAGATCAATACAGAATATACAGGTGACGACCAGATGGAAATTTCCATGAGCATTCTTTGGTTAATTCCACAATTCTCCCTGTTAGGGTTTATGAGAGGGTTAGCCGAAGATGGATTGATCGAGTTTTGTGCGGATAGAGTTGATGGTAATGATAAAAGAGAGGCCAGGTATTATGGATCTTACGCCAGTGAGTTAGTCCTGGGTATTGGAACACTACTAACCGCCGTTAGTATTGTCGCGTTTAGACGAACGTGGTTGGCTAATGATATATTCAAGAATCGTCTGGATAAGTACTACAGGGGACTAGTATTCATAGGTGTTGCTAACCTTTGCTATTACTTTTGTGTCGCCGTGAACTTTTATACCAAAGGAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

426

Amino Acids

48.2

Weight (kDa)

6.48

Isoelectric Point (pI)

46.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 204 - 344 1.9e-08 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 642
AccII CGCG 3 cut(s) 428, 470, 1142
AciI CCGC 6 cut(s) 59, 333, 365, 428, 1034, 1125
AclWI GGATC 4 cut(s) 260, 497, 839, 1087
AcoI YGGCCR 2 cut(s) 134, 398
AcsI RAATTY 2 cut(s) 152, 942
AcuI CTGAAG 1 cut(s) 243
AcyI GRCGYC 1 cut(s) 462
AfaI GTAC 2 cut(s) 220, 1196
AfiI CCNNNNNNNGG 2 cut(s) 339, 987
AflIII ACRYGT 1 cut(s) 313
AgsI TTSAA 3 cut(s) 276, 722, 1177
AhlI ACTAGT 3 cut(s) 28, 793, 1207
AjnI CCWGG 3 cut(s) 350, 1067, 1101
AluBI AGCT 2 cut(s) 573, 765
AluI AGCT 2 cut(s) 573, 765
Alw26I GTCTC 2 cut(s) 551, 585
AlwI GGATC 4 cut(s) 260, 497, 839, 1087
Ama87I CYCGRG 1 cut(s) 158
AoxI GGCC 3 cut(s) 134, 398, 1065
ApeKI GCWGC 3 cut(s) 140, 368, 872
ApoI RAATTY 2 cut(s) 152, 942
Asp700I GAANNNNTTC 1 cut(s) 671
AspS9I GGNCC 1 cut(s) 163
AsuHPI GGTGA 2 cut(s) 543, 938
AvaI CYCGRG 1 cut(s) 158
AvaII GGWCC 1 cut(s) 163
BaeGI GKGCMC 1 cut(s) 729
BalI TGGCCA 1 cut(s) 400
BanII GRGCYC 1 cut(s) 65
BarI GAAGNNNNNNTAC 2 cut(s) 449, 481
BbsI GAAGAC 1 cut(s) 457
BbvI GCAGC 3 cut(s) 127, 355, 859
BccI CCATC 7 cut(s) 354, 545, 562, 737, 931, 1007, 1040
BceAI ACGGC 3 cut(s) 149, 1112, 1238
BcgI CGANNNNNNTGC 4 cut(s) 56, 90, 1013, 1047
BciT130I CCWGG 3 cut(s) 352, 1069, 1103
BcoDI GTCTC 2 cut(s) 551, 585
BcuI ACTAGT 3 cut(s) 28, 793, 1207
BfaI CTAG 6 cut(s) 29, 119, 270, 617, 794, 1208
BfmI CTRYAG 1 cut(s) 1198
BglII AGATCT 1 cut(s) 392
BisI GCNGC 5 cut(s) 141, 333, 366, 369, 873
BlpI GCTNAGC 1 cut(s) 628
BlsI GCNGC 5 cut(s) 142, 334, 367, 370, 874
BmcAI AGTACT 2 cut(s) 220, 1196
Bme1390I CCNGG 3 cut(s) 352, 1069, 1103
Bme18I GGWCC 1 cut(s) 163
BmeT110I CYCGRG 1 cut(s) 158
BmgT120I GGNCC 1 cut(s) 163
BmiI GGNNCC 3 cut(s) 64, 100, 344
BmrFI CCNGG 3 cut(s) 352, 1069, 1103
BmsI GCATC 1 cut(s) 86
BpiI GAAGAC 1 cut(s) 457
BpmI CTGGAG 1 cut(s) 805
Bpu1102I GCTNAGC 1 cut(s) 628
BsaHI GRCGYC 1 cut(s) 462
BsaJI CCNNGG 2 cut(s) 350, 1102
Bsc4I CCNNNNNNNGG 2 cut(s) 339, 987
Bse118I RCCGGY 2 cut(s) 101, 136
Bse1I ACTGG 3 cut(s) 526, 702, 1089
BseBI CCWGG 3 cut(s) 352, 1069, 1103
BseDI CCNNGG 2 cut(s) 350, 1102
BseGI GGATG 1 cut(s) 346
BseLI CCNNNNNNNGG 2 cut(s) 339, 987
BseNI ACTGG 3 cut(s) 526, 702, 1089
BseSI GKGCMC 1 cut(s) 729
BseX3I CGGCCG 1 cut(s) 134
BseXI GCAGC 3 cut(s) 127, 355, 859
BseYI CCCAGC 1 cut(s) 532
BsgI GTGCAG 1 cut(s) 354
Bsh1236I CGCG 3 cut(s) 428, 470, 1142
Bsh1285I CGRYCG 1 cut(s) 137
BshFI GGCC 3 cut(s) 136, 400, 1067
BsiEI CGRYCG 1 cut(s) 137
BsiHKCI CYCGRG 1 cut(s) 158
BsiSI CCGG 2 cut(s) 102, 137
BslFI GGGAC 1 cut(s) 1218
BslI CCNNNNNNNGG 2 cut(s) 339, 987
BsmAI GTCTC 2 cut(s) 551, 585
BsmFI GGGAC 1 cut(s) 1218
BsmI GAATGC 2 cut(s) 79, 954
BsnI GGCC 3 cut(s) 136, 400, 1067
BsoBI CYCGRG 1 cut(s) 158
Bsp1286I GDGCHC 2 cut(s) 65, 729
Bsp1720I GCTNAGC 1 cut(s) 628
BspACI CCGC 6 cut(s) 59, 333, 365, 428, 1034, 1125
BspANI GGCC 3 cut(s) 136, 400, 1067
BspFNI CGCG 3 cut(s) 428, 470, 1142
BspLI GGNNCC 3 cut(s) 64, 100, 344
BspPI GGATC 4 cut(s) 260, 497, 839, 1087
BsrFI RCCGGY 2 cut(s) 101, 136
BsrI ACTGG 3 cut(s) 526, 702, 1089
BssAI RCCGGY 2 cut(s) 101, 136
BssECI CCNNGG 2 cut(s) 350, 1102
BssNAI GTATAC 1 cut(s) 643
BssNI GRCGYC 1 cut(s) 462
Bst1107I GTATAC 1 cut(s) 643
Bst2UI CCWGG 3 cut(s) 352, 1069, 1103
Bst4CI ACNGT 2 cut(s) 111, 647
Bst6I CTCTTC 1 cut(s) 508
BstACI GRCGYC 1 cut(s) 462
BstAPI GCANNNNNTGC 1 cut(s) 377
BstC8I GCNNGC 4 cut(s) 61, 103, 138, 571
BstDEI CTNAG 1 cut(s) 628
BstF5I GGATG 1 cut(s) 346
BstFNI CGCG 3 cut(s) 428, 470, 1142
BstMAI GTCTC 2 cut(s) 551, 585
BstMCI CGRYCG 1 cut(s) 137
BstMWI GCNNNNNNNGC 1 cut(s) 377
BstNI CCWGG 3 cut(s) 352, 1069, 1103
BstSCI CCNGG 3 cut(s) 350, 1067, 1101
BstSFI CTRYAG 1 cut(s) 1198
BstSLI GKGCMC 1 cut(s) 729
BstUI CGCG 3 cut(s) 428, 470, 1142
BstV1I GCAGC 3 cut(s) 127, 355, 859
BstV2I GAAGAC 1 cut(s) 457
BstX2I RGATCY 3 cut(s) 265, 392, 1079
BstYI RGATCY 3 cut(s) 265, 392, 1079
BstZ17I GTATAC 1 cut(s) 643
BstZI CGGCCG 1 cut(s) 134
BsuRI GGCC 3 cut(s) 136, 400, 1067
BtsCI GGATG 1 cut(s) 346
BtsIMutI CAGTG 1 cut(s) 1096
Cac8I GCNNGC 4 cut(s) 61, 103, 138, 571
Cfr10I RCCGGY 2 cut(s) 101, 136
Cfr13I GGNCC 1 cut(s) 163
CseI GACGC 1 cut(s) 451
Csp6I GTAC 2 cut(s) 219, 1195
CviAII CATG 2 cut(s) 622, 949
CviQI GTAC 2 cut(s) 219, 1195
DdeI CTNAG 1 cut(s) 628
EaeI YGGCCR 2 cut(s) 134, 398
EagI CGGCCG 1 cut(s) 134
Eam1104I CTCTTC 1 cut(s) 508
EarI CTCTTC 1 cut(s) 508
EclXI CGGCCG 1 cut(s) 134
Eco24I GRGCYC 1 cut(s) 65
Eco47I GGWCC 1 cut(s) 163
Eco52I CGGCCG 1 cut(s) 134
Eco57I CTGAAG 1 cut(s) 243
Eco88I CYCGRG 1 cut(s) 158
EcoRII CCWGG 3 cut(s) 350, 1067, 1101
EcoT22I ATGCAT 1 cut(s) 79
EcoT38I GRGCYC 1 cut(s) 65
FaeI CATG 2 cut(s) 625, 952
FaqI GGGAC 1 cut(s) 1218
FatI CATG 2 cut(s) 621, 948
FauI CCCGC 1 cut(s) 52
FblI GTMKAC 1 cut(s) 642
Fnu4HI GCNGC 5 cut(s) 141, 333, 366, 369, 873
FokI GGATG 1 cut(s) 333
FriOI GRGCYC 1 cut(s) 65
Fsp4HI GCNGC 5 cut(s) 141, 333, 366, 369, 873
FspBI CTAG 6 cut(s) 29, 119, 270, 617, 794, 1208
GluI GCNGC 5 cut(s) 141, 333, 366, 369, 873
GsaI CCCAGC 1 cut(s) 536
GsuI CTGGAG 1 cut(s) 805
HaeIII GGCC 3 cut(s) 136, 400, 1067
HapII CCGG 2 cut(s) 102, 137
HgaI GACGC 1 cut(s) 451
Hin1I GRCGYC 1 cut(s) 462
Hin1II CATG 2 cut(s) 625, 952
HinfI GANTC 6 cut(s) 68, 494, 691, 752, 889, 1180
HpaII CCGG 2 cut(s) 102, 137
HphI GGTGA 2 cut(s) 543, 938
Hpy166II GTNNAC 2 cut(s) 643, 1258
Hpy188I TCNGA 3 cut(s) 67, 82, 559
Hpy188III TCNNGA 8 cut(s) 158, 477, 603, 712, 784, 829, 1177, 1187
Hpy8I GTNNAC 2 cut(s) 643, 1258
HpyAV CCTTC 2 cut(s) 643, 682
HpyCH4III ACNGT 2 cut(s) 111, 647
HpyCH4IV ACGT 3 cut(s) 313, 821, 1154
HpyCH4V TGCA 2 cut(s) 77, 371
HpyF10VI GCNNNNNNNGC 1 cut(s) 377
HpyF3I CTNAG 1 cut(s) 628
HpySE526I ACGT 3 cut(s) 313, 821, 1154
Hsp92I GRCGYC 1 cut(s) 462
Hsp92II CATG 2 cut(s) 625, 952
KroI GCCGGC 2 cut(s) 101, 136
KroNI GCCGGC 2 cut(s) 103, 138
LmnI GCTCC 4 cut(s) 68, 98, 342, 770
Lsp1109I GCAGC 3 cut(s) 127, 355, 859
LweI GCATC 1 cut(s) 86
MaeI CTAG 6 cut(s) 29, 119, 270, 617, 794, 1208
MaeII ACGT 3 cut(s) 313, 821, 1154
MaeIII GTNAC 2 cut(s) 789, 926
MflI RGATCY 3 cut(s) 265, 392, 1079
MhlI GDGCHC 2 cut(s) 65, 729
MlsI TGGCCA 1 cut(s) 400
MluCI AATT 8 cut(s) 52, 152, 197, 232, 900, 942, 966, 974
MluNI TGGCCA 1 cut(s) 400
MnlI CCTC 8 cut(s) 118, 154, 384, 649, 780, 992, 1057, 1268
Mox20I TGGCCA 1 cut(s) 400
Mph1103I ATGCAT 1 cut(s) 79
MroNI GCCGGC 2 cut(s) 101, 136
MroXI GAANNNNTTC 1 cut(s) 671
MscI TGGCCA 1 cut(s) 400
MseI TTAA 3 cut(s) 173, 903, 965
Msp20I TGGCCA 1 cut(s) 400
MspI CCGG 2 cut(s) 102, 137
MspR9I CCNGG 3 cut(s) 352, 1069, 1103
Mva1269I GAATGC 2 cut(s) 79, 954
MvaI CCWGG 3 cut(s) 352, 1069, 1103
MvnI CGCG 3 cut(s) 428, 470, 1142
MwoI GCNNNNNNNGC 1 cut(s) 377
NaeI GCCGGC 2 cut(s) 103, 138
NgoMIV GCCGGC 2 cut(s) 101, 136
NlaIII CATG 2 cut(s) 625, 952
NlaIV GGNNCC 3 cut(s) 64, 100, 344
NmeAIII GCCGAG 1 cut(s) 562
NmuCI GTSAC 1 cut(s) 926
NsiI ATGCAT 1 cut(s) 79
PaeR7I CTCGAG 1 cut(s) 158
PcsI WCGNNNNNNNCGW 1 cut(s) 747
PctI GAATGC 2 cut(s) 79, 954
PdiI GCCGGC 2 cut(s) 103, 138
PdmI GAANNNNTTC 1 cut(s) 671
PfeI GAWTC 6 cut(s) 68, 494, 691, 752, 889, 1180
PkrI GCNGC 5 cut(s) 142, 334, 367, 370, 874
Psp6I CCWGG 3 cut(s) 350, 1067, 1101
PspFI CCCAGC 1 cut(s) 532
PspGI CCWGG 3 cut(s) 350, 1067, 1101
PspN4I GGNNCC 3 cut(s) 64, 100, 344
PspPI GGNCC 1 cut(s) 163
PsuI RGATCY 3 cut(s) 265, 392, 1079
RsaI GTAC 2 cut(s) 220, 1196
RsaNI GTAC 2 cut(s) 219, 1195
SaqAI TTAA 3 cut(s) 173, 903, 965
SatI GCNGC 5 cut(s) 141, 333, 366, 369, 873
Sau96I GGNCC 1 cut(s) 163
ScaI AGTACT 2 cut(s) 220, 1196
ScrFI CCNGG 3 cut(s) 352, 1069, 1103
SduI GDGCHC 2 cut(s) 65, 729
SfaNI GCATC 1 cut(s) 86
SfcI CTRYAG 1 cut(s) 1198
Sfr274I CTCGAG 1 cut(s) 158
SinI GGWCC 1 cut(s) 163
SlaI CTCGAG 1 cut(s) 158
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
SpeI ACTAGT 3 cut(s) 28, 793, 1207
Sse9I AATT 8 cut(s) 52, 152, 197, 232, 900, 942, 966, 974
SsiI CCGC 6 cut(s) 59, 333, 365, 428, 1034, 1125
SspI AATATT 4 cut(s) 90, 170, 484, 598
SspMI CTAG 6 cut(s) 29, 119, 270, 617, 794, 1208
StyD4I CCNGG 3 cut(s) 350, 1067, 1101
TaaI ACNGT 2 cut(s) 111, 647
TaiI ACGT 3 cut(s) 316, 824, 1157
TaqI TCGA 6 cut(s) 71, 159, 242, 681, 750, 1023
TasI AATT 8 cut(s) 52, 152, 197, 232, 900, 942, 966, 974
TatI WGTACW 2 cut(s) 218, 1194
TauI GCSGC 2 cut(s) 335, 368
TfiI GAWTC 6 cut(s) 68, 494, 691, 752, 889, 1180
Tru1I TTAA 3 cut(s) 173, 903, 965
Tru9I TTAA 3 cut(s) 173, 903, 965
TscAI CASTG 1 cut(s) 1096
TseFI GTSAC 1 cut(s) 926
TseI GCWGC 3 cut(s) 140, 368, 872
Tsp45I GTSAC 1 cut(s) 926
TspDTI ATGAA 7 cut(s) 4, 36, 346, 507, 625, 704, 1204
TspGWI ACGGA 2 cut(s) 111, 757
TspRI CASTG 1 cut(s) 1096
VpaK11BI GGWCC 1 cut(s) 163
XapI RAATTY 2 cut(s) 152, 942
XhoI CTCGAG 1 cut(s) 158
XmiI GTMKAC 1 cut(s) 642
XmnI GAANNNNTTC 1 cut(s) 671
XspI CTAG 6 cut(s) 29, 119, 270, 617, 794, 1208
ZrmI AGTACT 2 cut(s) 220, 1196
Zsp2I ATGCAT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.