RchiOBHm_Chr4g0405251

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000950
Physical Location & Seq
Forward (+)
25452871 .. 25453938
1068 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37675

Sequence Viewer

Length: 1068 bp
ATGGATGCTGTTATACCTAAATTTCTTGACGATCAATACACAAGTGAACAGAGAGAAAGAGATCATGAATACACAATAGAAGAAGAAGAACGATTCCAAAGCCGCAAAGATGCTTTGTGGAGCCATCCCTGGTTTTTCGGTGCAGTGGCAGCTCTTTTCATTCCTGGAGAGGCACATTGGAAAACTGTCTTCCTGATTTCAATGATTGCAATGGGGGTTTGTTTTTTATTATTTTGGTTTGGCAAATCCTTTTATTCAGTGTCATCTTCAGTAGAAACAGCACCAAGAGGGAAGTTTGGGGTCACACAGAAAGAAAATGGACACCGTTATGCAGAAATGTTGGCTATGAGCTTTGCCTTCATTGCATACAGTCTGGTGGAGGCAACGGGATCCACGTTCTTTTTTGAACAAACAACTTTCTTGGATGATCATGTCGGAAAATTCACAGTTCCTGTCGTATATCTCACTGTACTTCAGTCTTTTTCAAAGTTCATAATCCCACATCTTTGGGGGCTACTAATTCCAAAGCAGCGAAGAAGTGTTGCATTGGTTAAAATTGGGTGCGGTTTGGTTCTTTCTGTTTTATGCTGTGTCATTGCTTGGCGAATTGAGATTCGTAGGTCGAGTAAAATCAAGGTGGAAGTTGACCTTGAAGATAACAAACCAATTATTTCCATGAGCATCCTTTGGTTACTTCCACAATTCTCTCTGCTTGGGCTCATGAGAGGGTTAGCTGAAGACGGATTGGTCGAGTTTTTTGCAGAACAAGTGGTTGACGATGATAAACAAGTGGTGCTTAGGTACTATGGACCTCACGTATTTTCCTTTGTCCTGGGTATTGGAACACTACTGACCGCTGTTAGTATTTTGGGTTTTAGACGAACTTGGTTGGATGATGATATATATAAGAATCGTCTAGATAAGTATTACAGGGGATTAGTATTCCTAGGTGTTGCTAACCTTGGCTACTACTTGTGTATCGCCCTATACTTTTACAAAAAGCAGGGATCACAAATTTCTGCTGAAGAAACAAATGATGAAGAAACTGCAAGTAAGGGAGAGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

355

Amino Acids

40.61

Weight (kDa)

5.73

Isoelectric Point (pI)

38.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 101 - 265 9e-12 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 746
AciI CCGC 3 cut(s) 103, 564, 855
AclWI GGATC 3 cut(s) 384, 397, 1015
AcsI RAATTY 3 cut(s) 20, 440, 1014
AcuI CTGAAG 4 cut(s) 252, 458, 756, 1044
AfaI GTAC 2 cut(s) 471, 803
AgsI TTSAA 4 cut(s) 201, 407, 486, 653
AjnI CCWGG 3 cut(s) 128, 163, 831
AluBI AGCT 3 cut(s) 152, 351, 734
AluI AGCT 3 cut(s) 152, 351, 734
AlwI GGATC 3 cut(s) 384, 397, 1015
AlwNI CAGNNNCTG 1 cut(s) 452
ApeKI GCWGC 2 cut(s) 149, 529
ApoI RAATTY 3 cut(s) 20, 440, 1014
AspA2I CCTAGG 1 cut(s) 946
AspS9I GGNCC 1 cut(s) 809
AvaII GGWCC 1 cut(s) 809
AvrII CCTAGG 1 cut(s) 946
BaeI ACNNNNGTAYC 2 cut(s) 961, 994
BamHI GGATCC 1 cut(s) 389
BanII GRGCYC 1 cut(s) 720
BbsI GAAGAC 2 cut(s) 181, 744
BbvI GCAGC 2 cut(s) 161, 541
BccI CCATC 1 cut(s) 132
BcgI CGANNNNNNTGC 2 cut(s) 740, 774
BciT130I CCWGG 3 cut(s) 130, 165, 833
BclI TGATCA 1 cut(s) 427
BfaI CTAG 2 cut(s) 917, 947
BisI GCNGC 3 cut(s) 103, 150, 530
BlnI CCTAGG 1 cut(s) 946
BlsI GCNGC 3 cut(s) 104, 151, 531
Bme1390I CCNGG 3 cut(s) 130, 165, 833
Bme18I GGWCC 1 cut(s) 809
BmgT120I GGNCC 1 cut(s) 809
BmiI GGNNCC 2 cut(s) 122, 391
BmrFI CCNGG 3 cut(s) 130, 165, 833
BmsI GCATC 2 cut(s) 100, 690
BpiI GAAGAC 2 cut(s) 181, 744
BpmI CTGGAG 1 cut(s) 186
Bpu10I CCTNAGC 1 cut(s) 797
BsaAI YACGTR 1 cut(s) 817
BsaJI CCNNGG 4 cut(s) 128, 832, 946, 961
Bse3DI GCAATG 3 cut(s) 216, 360, 594
BseBI CCWGG 3 cut(s) 130, 165, 833
BseDI CCNNGG 4 cut(s) 128, 832, 946, 961
BseGI GGATG 5 cut(s) 10, 124, 430, 681, 898
BseMI GCAATG 3 cut(s) 216, 360, 594
BseXI GCAGC 2 cut(s) 161, 541
BsgI GTGCAG 1 cut(s) 162
Bsp1286I GDGCHC 1 cut(s) 720
Bsp143I GATC 5 cut(s) 31, 61, 389, 427, 1007
BspACI CCGC 3 cut(s) 103, 564, 855
BspHI TCATGA 2 cut(s) 64, 720
BspLI GGNNCC 2 cut(s) 122, 391
BspPI GGATC 3 cut(s) 384, 397, 1015
BsrDI GCAATG 3 cut(s) 216, 360, 594
BssECI CCNNGG 4 cut(s) 128, 832, 946, 961
BssMI GATC 5 cut(s) 31, 61, 389, 427, 1007
BssT1I CCWWGG 2 cut(s) 946, 961
Bst2UI CCWGG 3 cut(s) 130, 165, 833
Bst4CI ACNGT 5 cut(s) 187, 326, 371, 448, 469
BstBAI YACGTR 1 cut(s) 817
BstDEI CTNAG 1 cut(s) 797
BstF5I GGATG 5 cut(s) 10, 124, 430, 681, 898
BstKTI GATC 5 cut(s) 34, 64, 392, 430, 1010
BstMBI GATC 5 cut(s) 31, 61, 389, 427, 1007
BstMWI GCNNNNNNNGC 2 cut(s) 149, 362
BstNI CCWGG 3 cut(s) 130, 165, 833
BstSCI CCNGG 3 cut(s) 128, 163, 831
BstV1I GCAGC 2 cut(s) 161, 541
BstV2I GAAGAC 2 cut(s) 181, 744
BstX2I RGATCY 1 cut(s) 389
BstXI CCANNNNNNTGG 1 cut(s) 507
BstYI RGATCY 1 cut(s) 389
BtsCI GGATG 5 cut(s) 10, 124, 430, 681, 898
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 3 cut(s) 150, 264, 465
CaiI CAGNNNCTG 1 cut(s) 452
CciI TCATGA 2 cut(s) 64, 720
Cfr13I GGNCC 1 cut(s) 809
Csp6I GTAC 2 cut(s) 470, 802
CviAII CATG 4 cut(s) 65, 431, 676, 721
CviJI RGCY 9 cut(s) 102, 123, 152, 344, 351, 514, 718, 734, 966
CviKI_1 RGCY 9 cut(s) 102, 123, 152, 344, 351, 514, 718, 734, 966
CviQI GTAC 2 cut(s) 470, 802
DdeI CTNAG 1 cut(s) 797
DpnI GATC 5 cut(s) 33, 63, 391, 429, 1009
DpnII GATC 5 cut(s) 31, 61, 389, 427, 1007
DrdI GACNNNNNNGTC 1 cut(s) 746
DseDI GACNNNNNNGTC 1 cut(s) 746
Eco130I CCWWGG 2 cut(s) 946, 961
Eco24I GRGCYC 1 cut(s) 720
Eco47I GGWCC 1 cut(s) 809
Eco57I CTGAAG 4 cut(s) 252, 458, 756, 1044
EcoRII CCWGG 3 cut(s) 128, 163, 831
EcoT14I CCWWGG 2 cut(s) 946, 961
EcoT38I GRGCYC 1 cut(s) 720
ErhI CCWWGG 2 cut(s) 946, 961
FaeI CATG 4 cut(s) 68, 434, 679, 724
FalI AAGNNNNNCTT 4 cut(s) 633, 665, 780, 812
FatI CATG 4 cut(s) 64, 430, 675, 720
FbaI TGATCA 1 cut(s) 427
Fnu4HI GCNGC 3 cut(s) 103, 150, 530
FokI GGATG 5 cut(s) 17, 111, 437, 668, 905
FriOI GRGCYC 1 cut(s) 720
Fsp4HI GCNGC 3 cut(s) 103, 150, 530
FspBI CTAG 2 cut(s) 917, 947
GluI GCNGC 3 cut(s) 103, 150, 530
GsuI CTGGAG 1 cut(s) 186
Hin1II CATG 4 cut(s) 68, 434, 679, 724
HincII GTYRAC 2 cut(s) 646, 775
HindII GTYRAC 2 cut(s) 646, 775
HinfI GANTC 3 cut(s) 93, 613, 910
Hpy166II GTNNAC 3 cut(s) 47, 646, 775
Hpy188I TCNGA 1 cut(s) 437
Hpy188III TCNNGA 5 cut(s) 26, 65, 193, 721, 917
Hpy8I GTNNAC 3 cut(s) 47, 646, 775
HpyAV CCTTC 1 cut(s) 367
HpyCH4III ACNGT 5 cut(s) 187, 326, 371, 448, 469
HpyCH4IV ACGT 2 cut(s) 395, 816
HpyCH4V TGCA 7 cut(s) 143, 209, 332, 365, 545, 761, 1049
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 362
HpyF3I CTNAG 1 cut(s) 797
HpySE526I ACGT 2 cut(s) 395, 816
Hsp92II CATG 4 cut(s) 68, 434, 679, 724
Ksp22I TGATCA 1 cut(s) 427
Kzo9I GATC 5 cut(s) 31, 61, 389, 427, 1007
LmnI GCTCC 1 cut(s) 120
Lsp1109I GCAGC 2 cut(s) 161, 541
LweI GCATC 2 cut(s) 100, 690
MaeI CTAG 2 cut(s) 917, 947
MaeII ACGT 2 cut(s) 395, 816
MaeIII GTNAC 2 cut(s) 301, 690
MalI GATC 5 cut(s) 33, 63, 391, 429, 1009
MboI GATC 5 cut(s) 31, 61, 389, 427, 1007
MflI RGATCY 1 cut(s) 389
MhlI GDGCHC 1 cut(s) 720
MluCI AATT 8 cut(s) 20, 440, 519, 555, 606, 666, 701, 1014
MmeI TCCRAC 2 cut(s) 415, 870
MnlI CCTC 5 cut(s) 163, 281, 373, 719, 822
MseI TTAA 1 cut(s) 552
MslI CAYNNNNRTG 1 cut(s) 327
MspA1I CMGCKG 1 cut(s) 857
MspR9I CCNGG 3 cut(s) 130, 165, 833
MvaI CCWGG 3 cut(s) 130, 165, 833
MwoI GCNNNNNNNGC 2 cut(s) 149, 362
NdeII GATC 5 cut(s) 31, 61, 389, 427, 1007
NlaIII CATG 4 cut(s) 68, 434, 679, 724
NlaIV GGNNCC 2 cut(s) 122, 391
NmuCI GTSAC 1 cut(s) 301
PagI TCATGA 2 cut(s) 64, 720
PcsI WCGNNNNNNNCGW 2 cut(s) 392, 747
PfeI GAWTC 3 cut(s) 93, 613, 910
PfoI TCCNGGA 1 cut(s) 163
PkrI GCNGC 3 cut(s) 104, 151, 531
Ppu21I YACGTR 1 cut(s) 817
Psp6I CCWGG 3 cut(s) 128, 163, 831
PspGI CCWGG 3 cut(s) 128, 163, 831
PspN4I GGNNCC 2 cut(s) 122, 391
PspPI GGNCC 1 cut(s) 809
PstNI CAGNNNCTG 1 cut(s) 452
PsuI RGATCY 1 cut(s) 389
RsaI GTAC 2 cut(s) 471, 803
RsaNI GTAC 2 cut(s) 470, 802
RseI CAYNNNNRTG 1 cut(s) 327
SaqAI TTAA 1 cut(s) 552
SatI GCNGC 3 cut(s) 103, 150, 530
Sau3AI GATC 5 cut(s) 31, 61, 389, 427, 1007
Sau96I GGNCC 1 cut(s) 809
ScrFI CCNGG 3 cut(s) 130, 165, 833
SduI GDGCHC 1 cut(s) 720
SfaNI GCATC 2 cut(s) 100, 690
SinI GGWCC 1 cut(s) 809
SmiMI CAYNNNNRTG 1 cut(s) 327
Sse9I AATT 8 cut(s) 20, 440, 519, 555, 606, 666, 701, 1014
SsiI CCGC 3 cut(s) 103, 564, 855
SspMI CTAG 2 cut(s) 917, 947
StyD4I CCNGG 3 cut(s) 128, 163, 831
StyI CCWWGG 2 cut(s) 946, 961
TaaI ACNGT 5 cut(s) 187, 326, 371, 448, 469
TaiI ACGT 2 cut(s) 398, 819
TaqI TCGA 2 cut(s) 623, 750
TasI AATT 8 cut(s) 20, 440, 519, 555, 606, 666, 701, 1014
TatI WGTACW 1 cut(s) 469
TauI GCSGC 1 cut(s) 105
TfiI GAWTC 3 cut(s) 93, 613, 910
Tru1I TTAA 1 cut(s) 552
Tru9I TTAA 1 cut(s) 552
TscAI CASTG 3 cut(s) 150, 264, 472
TseFI GTSAC 1 cut(s) 301
TseI GCWGC 2 cut(s) 149, 529
Tsp45I GTSAC 1 cut(s) 301
TspDTI ATGAA 5 cut(s) 81, 148, 349, 481, 1053
TspGWI ACGGA 1 cut(s) 756
TspRI CASTG 3 cut(s) 150, 264, 472
VpaK11BI GGWCC 1 cut(s) 809
XapI RAATTY 3 cut(s) 20, 440, 1014
XbaI TCTAGA 1 cut(s) 916
XmaJI CCTAGG 1 cut(s) 946
XspI CTAG 2 cut(s) 917, 947
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.