Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0000228

Physical Location & Seq

Genomic Coordinates Reverse (-)

4021347 .. 4022251

Gene Structure 905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGATGAACCTCTGCAAGCTACTATCTTCAAAAAACCCTCAACTCCTCATCACCTTCGTCGTCACCAAAGAGTGGCACGGGTTCATTGAGTTCGACCAAAAACCCGACAACATCCGATTAGCCACCATACCCAATGTCATACCCTCCGAGCACAGTCGCGCGAACCACTTTGCCCTTATGGATGGGCTCGAGCAGCCCGTGACCGCCATAGTTGTTGATACCTTCCTTGCTTGGGCTTTGAGGATTGGGAATAGGAGGAATGTTCCGGTGGCTTCACTTTGGACTCAGTCACCGACATGTTCTCATTGTTGCATCACTTTGAGTTGTTCAAAGAAAATGGCCACTTACCTCTCGACGTCTCAGGTGTGCGTACTTTTACCACGATCGATTATTGGAGTATTTTCTAAAGTTACTTTAGAAGTATCTTATAATTCAAAATTTTTAATTATTAAATATTTGAACAAATTCTTTTTAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0008194 GO:0009909 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0080043 GO:0080044 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

160

Amino Acids

17.98

Weight (kDa)

9.28

Isoelectric Point (pI)

41.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30140 AT2G30140 AT2G30150 AT2G30150
fragaria_vesca	FvH4_3g39560 FvH4_3g39570 FvH4_3g39580 FvH4_3g39590 FvH4_3g39591 FvH4_3g39620 FvH4_3g39630 FvH4_3g39630 FvH4_3g39631
malus_domestica	MD03G1059700.v1.1 MD11G1061800.v1.1 MD11G1061900.v1.1 MD11G1062000.v1.1 MD11G1062100.v1.1 MD11G1062200.v1.1 MD11G1062300.v1.1 MD11G1062400.v1.1 MD11G1062500.v1.1 MD11G1062600.v1.1 MD11G1062700.v1.1 MD11G1062800.v1.1
prunus_persica	Prupe.6G049300_v2.0.a1 Prupe.6G049400_v2.0.a1 Prupe.6G049600_v2.0.a1 Prupe.6G049700_v2.0.a1 Prupe.6G049900_v2.0.a1 Prupe.6G050000_v2.0.a1 Prupe.6G050100_v2.0.a1 Prupe.6G050200_v2.0.a1
pyrus_communis	pycom03g04800 pycom11g05140 pycom11g05170 pycom11g05180 pycom11g05190 pycom11g05220 pycom11g05230 pycom11g05240 pycom11g05260 pycom11g05270
rosa_chinensis	RchiOBHm_Chr5g0071331 RchiOBHm_Chr5g0071341 RchiOBHm_Chr5g0071371 RchiOBHm_Chr5g0071381 RchiOBHm_Chr5g0071431 RchiOBHm_Chr5g0071441 RchiOBHm_Chr5g0071451 RchiOBHm_Chr5g0071461 RchiOBHm_Chr5g0071471
rosa_laevigata	RLG00000036203 RLG00000036204 RLG00000036207 RLG00000036208 RLG00000036209 RLG00000036210 RLG00000036213 RLG00000036214 RLG00000036215 RLG00000036217
rosa_multiflora	Rmu_co8256977.1_g000001 Rmu_co8352537.1_g000001 Rmu_sc0001567.1_g000004 Rmu_sc0004697.1_g000003 Rmu_sc0006990.1_g000003 Rmu_sc0006990.1_g000004 Rmu_sc0009988.1_g000004 Rmu_sc0009988.1_g000005 Rmu_sc0009988.1_g000006 Rmu_sc0009988.1_g000008 Rmu_sc0009988.1_g000009 Rmu_sc0009988.1_g000014 Rmu_sc0009988.1_g000020 Rmu_sc0009988.1_g000021
rosa_roxburghii	Rroxscaffold_1G00009650 Rroxscaffold_1G00009670 Rroxscaffold_1G00009680 Rroxscaffold_1G00009740 Rroxscaffold_1G00009760 Rroxscaffold_1G00009780 Rroxscaffold_1G00009800 Rroxscaffold_7G00203790
rosa_rugosa	Rorug05G0411400 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411700 Rorug05G0411700 Rorug05G0411900 Rorug05G0412000 Rorug05G0412200 Rorug05G0412300 Rorug05G0412400 Rorug05G0412500
rosa_samantha	Rh1AG118000 Rh1BG088900 Rh1CG112900 Rh5AG467800 Rh5AG467900 Rh5AG468100 Rh5AG468200 Rh5AG468300 Rh5AG468400 Rh5AG468500 Rh5AG468600 Rh5BG486300 Rh5BG486400 Rh5BG486600 Rh5BG486700 Rh5BG486800 Rh5BG487100 Rh5BG487200 Rh5BG487300 Rh5BG487400 Rh5BG487500 Rh5BG487700 Rh5CG510700 Rh5CG510800 Rh5CG511000 Rh5CG511100 Rh5CG511200 Rh5CG511400 Rh5CG511500 Rh5CG511600 Rh5CG511700 Rh5CG511900 Rh5DG497500 Rh5DG497600 Rh5DG497700 Rh5DG498000 Rh5DG498300 Rh5DG498400 Rh5DG498500 Rh5DG498600 Rh5DG498700
rosa_wichuraiana	Rw5G043460 Rw5G043470 Rw5G043480 Rw5G043490 Rw5G043500 Rw5G043510 Rw5G043530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	429
AatII	GACGTC	1 cut(s)	359
AccB7I	CCANNNNNTGG	1 cut(s)	72
AccII	CGCG	2 cut(s)	159, 161
AciI	CCGC	1 cut(s)	204
AcoI	YGGCCR	1 cut(s)	339
AcsI	RAATTY	2 cut(s)	437, 464
AcyI	GRCGYC	1 cut(s)	356
AfaI	GTAC	1 cut(s)	372
AfiI	CCNNNNNNNGG	2 cut(s)	72, 232
AflIII	ACRYGT	1 cut(s)	296
AgsI	TTSAA	4 cut(s)	30, 330, 435, 460
AluBI	AGCT	1 cut(s)	19
AluI	AGCT	1 cut(s)	19
Alw21I	GWGCWC	1 cut(s)	153
Alw26I	GTCTC	1 cut(s)	363
Ama87I	CYCGRG	1 cut(s)	188
AoxI	GGCC	1 cut(s)	339
ApeKI	GCWGC	1 cut(s)	193
ApoI	RAATTY	2 cut(s)	437, 464
Asp700I	GAANNNNTTC	1 cut(s)	464
AspLEI	GCGC	1 cut(s)	161
AsuHPI	GGTGA	3 cut(s)	43, 55, 282
AvaI	CYCGRG	1 cut(s)	188
BalI	TGGCCA	1 cut(s)	341
BanII	GRGCYC	1 cut(s)	189
Bbv12I	GWGCWC	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	205
BccI	CCATC	1 cut(s)	176
BcoDI	GTCTC	1 cut(s)	363
BisI	GCNGC	1 cut(s)	194
BlsI	GCNGC	1 cut(s)	195
BmeT110I	CYCGRG	1 cut(s)	188
BmsI	GCATC	1 cut(s)	321
Bsa29I	ATCGAT	1 cut(s)	386
BsaHI	GRCGYC	1 cut(s)	356
BsaWI	WCCGGW	1 cut(s)	265
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 232
BseCI	ATCGAT	1 cut(s)	386
BseGI	GGATG	2 cut(s)	111, 187
BseLI	CCNNNNNNNGG	2 cut(s)	72, 232
BseMII	CTCAG	2 cut(s)	299, 374
BseRI	GAGGAG	1 cut(s)	35
BseXI	GCAGC	1 cut(s)	205
Bsh1236I	CGCG	2 cut(s)	159, 161
Bsh1285I	CGRYCG	1 cut(s)	386
BshFI	GGCC	1 cut(s)	341
BshVI	ATCGAT	1 cut(s)	386
BsiEI	CGRYCG	1 cut(s)	386
BsiHKAI	GWGCWC	1 cut(s)	153
BsiHKCI	CYCGRG	1 cut(s)	188
BsiSI	CCGG	1 cut(s)	266
BslI	CCNNNNNNNGG	2 cut(s)	72, 232
BsmAI	GTCTC	1 cut(s)	363
BsmBI	CGTCTC	1 cut(s)	363
BsnI	GGCC	1 cut(s)	341
BsoBI	CYCGRG	1 cut(s)	188
Bsp1286I	GDGCHC	2 cut(s)	153, 189
Bsp143I	GATC	1 cut(s)	383
BspACI	CCGC	1 cut(s)	204
BspANI	GGCC	1 cut(s)	341
BspCNI	CTCAG	2 cut(s)	298, 373
BspDI	ATCGAT	1 cut(s)	386
BspFNI	CGCG	2 cut(s)	159, 161
BssMI	GATC	1 cut(s)	383
BssNI	GRCGYC	1 cut(s)	356
Bst4CI	ACNGT	1 cut(s)	155
BstACI	GRCGYC	1 cut(s)	356
BstC8I	GCNNGC	1 cut(s)	17
BstDEI	CTNAG	2 cut(s)	285, 360
BstF5I	GGATG	2 cut(s)	111, 187
BstFNI	CGCG	2 cut(s)	159, 161
BstHHI	GCGC	1 cut(s)	161
BstKTI	GATC	1 cut(s)	386
BstMAI	GTCTC	1 cut(s)	363
BstMBI	GATC	1 cut(s)	383
BstMCI	CGRYCG	1 cut(s)	386
BstMWI	GCNNNNNNNGC	1 cut(s)	193
BstNSI	RCATGY	1 cut(s)	300
BstUI	CGCG	2 cut(s)	159, 161
BstV1I	GCAGC	1 cut(s)	205
Bsu15I	ATCGAT	1 cut(s)	386
BsuRI	GGCC	1 cut(s)	341
BsuTUI	ATCGAT	1 cut(s)	386
BtsCI	GGATG	2 cut(s)	111, 187
Cac8I	GCNNGC	1 cut(s)	17
CfoI	GCGC	1 cut(s)	161
ClaI	ATCGAT	1 cut(s)	386
Csp6I	GTAC	1 cut(s)	371
CviAII	CATG	1 cut(s)	297
CviJI	RGCY	7 cut(s)	19, 122, 187, 196, 236, 272, 341
CviKI_1	RGCY	7 cut(s)	19, 122, 187, 196, 236, 272, 341
CviQI	GTAC	1 cut(s)	371
DdeI	CTNAG	2 cut(s)	285, 360
DpnI	GATC	1 cut(s)	385
DpnII	GATC	1 cut(s)	383
EaeI	YGGCCR	1 cut(s)	339
Eco24I	GRGCYC	1 cut(s)	189
Eco88I	CYCGRG	1 cut(s)	188
EcoT38I	GRGCYC	1 cut(s)	189
Esp3I	CGTCTC	1 cut(s)	363
FaeI	CATG	1 cut(s)	300
FaiI	YATR	7 cut(s)	128, 140, 179, 209, 298, 429, 478
FatI	CATG	1 cut(s)	296
Fnu4HI	GCNGC	1 cut(s)	194
FokI	GGATG	2 cut(s)	98, 194
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	1 cut(s)	194
GlaI	GCGC	1 cut(s)	160
GluI	GCNGC	1 cut(s)	194
HaeIII	GGCC	1 cut(s)	341
HapII	CCGG	1 cut(s)	266
HhaI	GCGC	1 cut(s)	161
Hin1I	GRCGYC	1 cut(s)	356
Hin1II	CATG	1 cut(s)	300
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HinfI	GANTC	1 cut(s)	283
HpaII	CCGG	1 cut(s)	266
HphI	GGTGA	3 cut(s)	43, 55, 282
Hpy188I	TCNGA	2 cut(s)	116, 148
Hpy188III	TCNNGA	1 cut(s)	352
Hpy99I	CGWCG	2 cut(s)	62, 358
HpyAV	CCTTC	2 cut(s)	64, 232
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4IV	ACGT	1 cut(s)	356
HpyCH4V	TGCA	2 cut(s)	15, 312
HpyF10VI	GCNNNNNNNGC	1 cut(s)	193
HpyF3I	CTNAG	2 cut(s)	285, 360
HpySE526I	ACGT	1 cut(s)	356
Hsp92I	GRCGYC	1 cut(s)	356
Hsp92II	CATG	1 cut(s)	300
HspAI	GCGC	1 cut(s)	159
Kzo9I	GATC	1 cut(s)	383
LpnPI	CCDG	2 cut(s)	279, 347
Lsp1109I	GCAGC	1 cut(s)	205
LweI	GCATC	1 cut(s)	321
MaeII	ACGT	1 cut(s)	356
MaeIII	GTNAC	4 cut(s)	61, 199, 288, 409
MalI	GATC	1 cut(s)	385
MboI	GATC	1 cut(s)	383
MboII	GAAGA	1 cut(s)	18
MhlI	GDGCHC	2 cut(s)	153, 189
MlsI	TGGCCA	1 cut(s)	341
MluCI	AATT	4 cut(s)	430, 437, 444, 464
MluNI	TGGCCA	1 cut(s)	341
MlyI	GAGTC	1 cut(s)	277
MnlI	CCTC	7 cut(s)	20, 48, 56, 154, 234, 249, 359
Mox20I	TGGCCA	1 cut(s)	341
MroXI	GAANNNNTTC	1 cut(s)	464
MscI	TGGCCA	1 cut(s)	341
MseI	TTAA	3 cut(s)	443, 450, 473
MslI	CAYNNNNRTG	1 cut(s)	295
Msp20I	TGGCCA	1 cut(s)	341
MspI	CCGG	1 cut(s)	266
MvnI	CGCG	2 cut(s)	159, 161
MwoI	GCNNNNNNNGC	1 cut(s)	193
NdeII	GATC	1 cut(s)	383
NlaIII	CATG	1 cut(s)	300
NmuCI	GTSAC	3 cut(s)	61, 199, 288
NspI	RCATGY	1 cut(s)	300
PaeR7I	CTCGAG	1 cut(s)	188
PciI	ACATGT	1 cut(s)	296
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PdmI	GAANNNNTTC	1 cut(s)	464
PflFI	GACNNNGTC	1 cut(s)	286
PflMI	CCANNNNNTGG	1 cut(s)	72
PkrI	GCNGC	1 cut(s)	195
Ple19I	CGATCG	1 cut(s)	386
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
PscI	ACATGT	1 cut(s)	296
PsiI	TTATAA	1 cut(s)	429
PspXI	VCTCGAGB	1 cut(s)	188
PsyI	GACNNNGTC	1 cut(s)	286
PvuI	CGATCG	1 cut(s)	386
RsaI	GTAC	1 cut(s)	372
RsaNI	GTAC	1 cut(s)	371
RseI	CAYNNNNRTG	1 cut(s)	295
SaqAI	TTAA	3 cut(s)	443, 450, 473
SatI	GCNGC	1 cut(s)	194
Sau3AI	GATC	1 cut(s)	383
SchI	GAGTC	1 cut(s)	277
SduI	GDGCHC	2 cut(s)	153, 189
SetI	ASST	7 cut(s)	12, 21, 56, 224, 351, 359, 366
SfaNI	GCATC	1 cut(s)	321
Sfr274I	CTCGAG	1 cut(s)	188
SlaI	CTCGAG	1 cut(s)	188
SmiMI	CAYNNNNRTG	1 cut(s)	295
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	4 cut(s)	430, 437, 444, 464
SsiI	CCGC	1 cut(s)	204
SspI	AATATT	1 cut(s)	455
TaaI	ACNGT	1 cut(s)	155
TaiI	ACGT	1 cut(s)	359
TaqI	TCGA	4 cut(s)	93, 189, 353, 386
TasI	AATT	4 cut(s)	430, 437, 444, 464
Tru1I	TTAA	3 cut(s)	443, 450, 473
Tru9I	TTAA	3 cut(s)	443, 450, 473
TseFI	GTSAC	3 cut(s)	61, 199, 288
TseI	GCWGC	1 cut(s)	193
Tsp45I	GTSAC	3 cut(s)	61, 199, 288
TspDTI	ATGAA	2 cut(s)	20, 73
Tth111I	GACNNNGTC	1 cut(s)	286
Van91I	CCANNNNNTGG	1 cut(s)	72
XapI	RAATTY	2 cut(s)	437, 464
XceI	RCATGY	1 cut(s)	300
XhoI	CTCGAG	1 cut(s)	188
XmnI	GAANNNNTTC	1 cut(s)	464
ZraI	GACGTC	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.