pycom11g07020

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000478
Physical Location & Seq
Forward (+)
5329823 .. 5331507
1685 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 510 bp
ATGGATCCGAATGAACGAGGTAGTACTAATATGGAGAGGGCGAAGATGTTCCTGGGGCTGACTCCGGACGAGTCAGAGGCCGTGTCGCGACTCGCTGTTCCTGAACGGCAAGCCGGCGAGGGAAAGAGCTTCTTCGACGCTTTCGCCCTTGCGGGAATCCGAGTCGTCCGAGTCGAACCCGGACTCGTCGTCTGTTCTTTCAAGGTCCCTCCCCGCCTCACCGATAGAAGTGGAAACTTGGCAAATGGTGCAATTGCAAACCTTGTCGATGTCATTGGAATTTCTTTAGAATATGGCAAGGGGCTCCCTATGATTGTTACAATCGACATGTCTATCTCGTATCTTTCTACAGCGAAGATTGATGACGAGCTCGAGATCACCTCAAAAAGATTAGGAAAAAGAGGAGGTTATACCGGAACGGTTGTAGTTTTGAGAAACAAAACAACAGGGGAGATTATTGCCGAAGGTCGACTTTCGATGTTCCGTGCACTTGGTTCTAGCAAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

170

Amino Acids

18.16

Weight (kDa)

8.76

Isoelectric Point (pI)

23.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29590
fragaria_vesca FvH4_3g37930 FvH4_3g37930 FvH4_3g37970 FvH4_3g37990 FvH4_3g37990 FvH4_3g38000 FvH4_3g38010 FvH4_3g38050 FvH4_3g38060
malus_domestica MD03G1077300.v1.1 MD03G1077400.v1.1 MD03G1077500.v1.1 MD08G1031500.v1.1 MD11G1081500.v1.1 MD11G1081600.v1.1 MD11G1081700.v1.1 MD11G1081800.v1.1 MD11G1081900.v1.1
prunus_persica Prupe.6G061800_v2.0.a1 Prupe.6G061900_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062200_v2.0.a1 Prupe.6G062300_v2.0.a1
pyrus_communis pycom03g06110 pycom03g06120 pycom03g06130 pycom11g06960 pycom11g06970 pycom11g06980 pycom11g07020
rosa_chinensis RchiOBHm_Chr5g0068361 RchiOBHm_Chr5g0068381 RchiOBHm_Chr5g0068391 RchiOBHm_Chr5g0068401 RchiOBHm_Chr5g0068411 RchiOBHm_Chr5g0068441
rosa_laevigata RLG00000035969 RLG00000035971 RLG00000035972 RLG00000035973 RLG00000035974
rosa_multiflora Rmu_sc0001418.1_g000002 Rmu_sc0003450.1_g000002 Rmu_sc0003450.1_g000003 Rmu_sc0003450.1_g000004 Rmu_sc0003450.1_g000007 Rmu_sc0005087.1_g000001 Rmu_sc0006054.1_g000001
rosa_roxburghii Rroxscaffold_1G00012370 Rroxscaffold_1G00012380 Rroxscaffold_1G00012390 Rroxscaffold_1G00012400 Rroxscaffold_1G00012420 Rroxscaffold_1G00013110 Rroxscaffold_1G00013120 Rroxscaffold_1G00013130 Rroxscaffold_1G00013150 Rroxscaffold_1G00013160
rosa_rugosa Rorug05G0389200 Rorug05G0389400 Rorug05G0389500 Rorug05G0389600 Rorug05G0389600
rosa_samantha Rh5AG447900 Rh5AG448100 Rh5AG448200 Rh5AG448300 Rh5AG448400 Rh5BG465700 Rh5BG465900 Rh5BG466200 Rh5BG466300 Rh5BG466700 Rh5CG487500 Rh5CG487800 Rh5CG487900 Rh5CG488300 Rh5DG479500 Rh5DG479700 Rh5DG479800 Rh5DG480100
rosa_wichuraiana Rw5G041800 Rw5G041830 Rw5G041840 Rw5G041850 Rw5G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 469
AccII CGCG 1 cut(s) 88
AccIII TCCGGA 1 cut(s) 64
AciI CCGC 2 cut(s) 152, 214
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 1 cut(s) 279
AfaI GTAC 1 cut(s) 25
AflIII ACRYGT 1 cut(s) 327
AgsI TTSAA 1 cut(s) 202
AhdI GACNNNNNGTC 1 cut(s) 188
AjnI CCWGG 1 cut(s) 51
AluBI AGCT 2 cut(s) 129, 370
AluI AGCT 2 cut(s) 129, 370
Alw21I GWGCWC 2 cut(s) 372, 490
Alw44I GTGCAC 1 cut(s) 486
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 371
Aor13HI TCCGGA 1 cut(s) 64
AoxI GGCC 1 cut(s) 78
ApaLI GTGCAC 1 cut(s) 486
ApoI RAATTY 1 cut(s) 279
Asp700I GAANNNNTTC 1 cut(s) 47
AspS9I GGNCC 1 cut(s) 205
AsuC2I CCSGG 1 cut(s) 180
AsuHPI GGTGA 2 cut(s) 211, 370
AvaI CYCGRG 1 cut(s) 371
AvaII GGWCC 1 cut(s) 205
BaeGI GKGCMC 1 cut(s) 490
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 2 cut(s) 306, 372
Bbv12I GWGCWC 2 cut(s) 372, 490
BceAI ACGGC 2 cut(s) 65, 122
BciT130I CCWGG 1 cut(s) 53
BcnI CCSGG 1 cut(s) 180
BfaI CTAG 1 cut(s) 498
BfmI CTRYAG 1 cut(s) 348
BmcAI AGTACT 1 cut(s) 25
Bme1390I CCNGG 2 cut(s) 53, 180
Bme18I GGWCC 1 cut(s) 205
BmeRI GACNNNNNGTC 1 cut(s) 188
BmeT110I CYCGRG 1 cut(s) 371
BmgT120I GGNCC 1 cut(s) 205
BmiI GGNNCC 3 cut(s) 6, 207, 305
BmrFI CCNGG 2 cut(s) 53, 180
BplI GAGNNNNNCTC 2 cut(s) 365, 397
BpuMI CCSGG 1 cut(s) 180
BsaJI CCNNGG 1 cut(s) 52
BsaWI WCCGGW 2 cut(s) 64, 413
Bse118I RCCGGY 1 cut(s) 113
BseAI TCCGGA 1 cut(s) 64
BseBI CCWGG 1 cut(s) 53
BseDI CCNNGG 1 cut(s) 52
BseRI GAGGAG 1 cut(s) 417
BseSI GKGCMC 1 cut(s) 490
Bsh1236I CGCG 1 cut(s) 88
BshFI GGCC 1 cut(s) 80
BsiHKAI GWGCWC 2 cut(s) 372, 490
BsiHKCI CYCGRG 1 cut(s) 371
BsiSI CCGG 4 cut(s) 65, 114, 180, 414
BslFI GGGAC 1 cut(s) 191
BsmFI GGGAC 1 cut(s) 191
BsnI GGCC 1 cut(s) 80
BsoBI CYCGRG 1 cut(s) 371
Bsp1286I GDGCHC 3 cut(s) 306, 372, 490
Bsp13I TCCGGA 1 cut(s) 64
Bsp143I GATC 2 cut(s) 4, 375
Bsp68I TCGCGA 1 cut(s) 88
BspACI CCGC 2 cut(s) 152, 214
BspANI GGCC 1 cut(s) 80
BspEI TCCGGA 1 cut(s) 64
BspFNI CGCG 1 cut(s) 88
BspLI GGNNCC 3 cut(s) 6, 207, 305
BspPI GGATC 1 cut(s) 12
BsrFI RCCGGY 1 cut(s) 113
BssAI RCCGGY 1 cut(s) 113
BssECI CCNNGG 1 cut(s) 52
BssMI GATC 2 cut(s) 4, 375
Bst2UI CCWGG 1 cut(s) 53
Bst4CI ACNGT 1 cut(s) 421
BstAPI GCANNNNNTGC 1 cut(s) 248
BstC8I GCNNGC 2 cut(s) 111, 115
BstFNI CGCG 1 cut(s) 88
BstKTI GATC 2 cut(s) 7, 378
BstMBI GATC 2 cut(s) 4, 375
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstNI CCWGG 1 cut(s) 53
BstNSI RCATGY 1 cut(s) 331
BstSCI CCNGG 2 cut(s) 51, 178
BstSFI CTRYAG 1 cut(s) 348
BstSLI GKGCMC 1 cut(s) 490
BstUI CGCG 1 cut(s) 88
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 1 cut(s) 80
BtuMI TCGCGA 1 cut(s) 88
Cac8I GCNNGC 2 cut(s) 111, 115
Cfr10I RCCGGY 1 cut(s) 113
Cfr13I GGNCC 1 cut(s) 205
CseI GACGC 1 cut(s) 146
Csp6I GTAC 1 cut(s) 24
CviAII CATG 1 cut(s) 328
CviJI RGCY 6 cut(s) 58, 80, 113, 129, 304, 370
CviKI_1 RGCY 6 cut(s) 58, 80, 113, 129, 304, 370
CviQI GTAC 1 cut(s) 24
DpnI GATC 2 cut(s) 6, 377
DpnII GATC 2 cut(s) 4, 375
DriI GACNNNNNGTC 1 cut(s) 188
Eam1105I GACNNNNNGTC 1 cut(s) 188
Ecl136II GAGCTC 1 cut(s) 370
Eco24I GRGCYC 2 cut(s) 306, 372
Eco47I GGWCC 1 cut(s) 205
Eco53kI GAGCTC 1 cut(s) 370
Eco88I CYCGRG 1 cut(s) 371
EcoICRI GAGCTC 1 cut(s) 370
EcoO109I RGGNCCY 1 cut(s) 205
EcoRII CCWGG 1 cut(s) 51
EcoT38I GRGCYC 2 cut(s) 306, 372
FaeI CATG 1 cut(s) 331
FaiI YATR 5 cut(s) 32, 294, 311, 329, 411
FalI AAGNNNNNCTT 4 cut(s) 116, 148, 456, 488
FaqI GGGAC 1 cut(s) 191
FatI CATG 1 cut(s) 327
FauI CCCGC 2 cut(s) 145, 221
FblI GTMKAC 1 cut(s) 469
FriOI GRGCYC 2 cut(s) 306, 372
FspBI CTAG 1 cut(s) 498
HaeIII GGCC 1 cut(s) 80
HapII CCGG 4 cut(s) 65, 114, 180, 414
HgaI GACGC 1 cut(s) 146
Hin1II CATG 1 cut(s) 331
HincII GTYRAC 1 cut(s) 470
HindII GTYRAC 1 cut(s) 470
HinfI GANTC 7 cut(s) 61, 71, 90, 156, 162, 171, 183
HpaII CCGG 4 cut(s) 65, 114, 180, 414
HphI GGTGA 2 cut(s) 211, 370
Hpy166II GTNNAC 2 cut(s) 470, 488
Hpy188I TCNGA 5 cut(s) 9, 76, 161, 170, 509
Hpy188III TCNNGA 4 cut(s) 65, 87, 101, 373
Hpy8I GTNNAC 2 cut(s) 470, 488
Hpy99I CGWCG 2 cut(s) 140, 191
HpyAV CCTTC 1 cut(s) 458
HpyCH4III ACNGT 1 cut(s) 421
HpyCH4V TGCA 3 cut(s) 251, 257, 488
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
Hsp92II CATG 1 cut(s) 331
Kpn2I TCCGGA 1 cut(s) 64
KroI GCCGGC 1 cut(s) 113
KroNI GCCGGC 1 cut(s) 115
Kzo9I GATC 2 cut(s) 4, 375
LmnI GCTCC 1 cut(s) 309
LpnPI CCDG 8 cut(s) 38, 65, 78, 114, 127, 193, 427, 432
MaeI CTAG 1 cut(s) 498
MaeIII GTNAC 1 cut(s) 316
MalI GATC 2 cut(s) 6, 377
MboI GATC 2 cut(s) 4, 375
MboII GAAGA 3 cut(s) 55, 124, 367
MfeI CAATTG 1 cut(s) 252
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 3 cut(s) 306, 372, 490
MluCI AATT 2 cut(s) 252, 279
MlyI GAGTC 6 cut(s) 55, 80, 84, 171, 177, 180
MnlI CCTC 9 cut(s) 11, 30, 70, 112, 219, 227, 391, 395, 398
MroI TCCGGA 1 cut(s) 64
MroNI GCCGGC 1 cut(s) 113
MroXI GAANNNNTTC 1 cut(s) 47
MspI CCGG 4 cut(s) 65, 114, 180, 414
MspR9I CCNGG 2 cut(s) 53, 180
MunI CAATTG 1 cut(s) 252
MvaI CCWGG 1 cut(s) 53
MvnI CGCG 1 cut(s) 88
MwoI GCNNNNNNNGC 1 cut(s) 248
NaeI GCCGGC 1 cut(s) 115
NciI CCSGG 1 cut(s) 180
NdeII GATC 2 cut(s) 4, 375
NgoMIV GCCGGC 1 cut(s) 113
NlaIII CATG 1 cut(s) 331
NlaIV GGNNCC 3 cut(s) 6, 207, 305
NruI TCGCGA 1 cut(s) 88
NspI RCATGY 1 cut(s) 331
PaeR7I CTCGAG 1 cut(s) 371
PciI ACATGT 1 cut(s) 327
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PdiI GCCGGC 1 cut(s) 115
PdmI GAANNNNTTC 1 cut(s) 47
PfeI GAWTC 1 cut(s) 156
PleI GAGTC 6 cut(s) 55, 79, 84, 170, 177, 179
PpsI GAGTC 6 cut(s) 55, 79, 84, 170, 177, 179
PpuMI RGGWCCY 1 cut(s) 205
PscI ACATGT 1 cut(s) 327
Psp124BI GAGCTC 1 cut(s) 372
Psp5II RGGWCCY 1 cut(s) 205
Psp6I CCWGG 1 cut(s) 51
PspGI CCWGG 1 cut(s) 51
PspN4I GGNNCC 3 cut(s) 6, 207, 305
PspPI GGNCC 1 cut(s) 205
PspPPI RGGWCCY 1 cut(s) 205
PsuI RGATCY 1 cut(s) 4
RruI TCGCGA 1 cut(s) 88
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
SacI GAGCTC 1 cut(s) 372
SalI GTCGAC 1 cut(s) 468
Sau3AI GATC 2 cut(s) 4, 375
Sau96I GGNCC 1 cut(s) 205
ScaI AGTACT 1 cut(s) 25
SchI GAGTC 6 cut(s) 55, 80, 84, 171, 177, 180
ScrFI CCNGG 2 cut(s) 53, 180
SduI GDGCHC 3 cut(s) 306, 372, 490
SetI ASST 8 cut(s) 22, 131, 207, 264, 372, 383, 409, 469
SfcI CTRYAG 1 cut(s) 348
Sfr274I CTCGAG 1 cut(s) 371
SinI GGWCC 1 cut(s) 205
SlaI CTCGAG 1 cut(s) 371
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
Sse9I AATT 2 cut(s) 252, 279
SsiI CCGC 2 cut(s) 152, 214
SspMI CTAG 1 cut(s) 498
SstI GAGCTC 1 cut(s) 372
StyD4I CCNGG 2 cut(s) 51, 178
TaaI ACNGT 1 cut(s) 421
TaqI TCGA 7 cut(s) 135, 174, 267, 324, 372, 469, 476
TasI AATT 2 cut(s) 252, 279
TatI WGTACW 1 cut(s) 23
TfiI GAWTC 1 cut(s) 156
TspDTI ATGAA 1 cut(s) 27
TspGWI ACGGA 1 cut(s) 473
VneI GTGCAC 1 cut(s) 486
VpaK11BI GGWCC 1 cut(s) 205
XapI RAATTY 1 cut(s) 279
XceI RCATGY 1 cut(s) 331
XhoI CTCGAG 1 cut(s) 371
XmiI GTMKAC 1 cut(s) 469
XmnI GAANNNNTTC 1 cut(s) 47
XspI CTAG 1 cut(s) 498
ZrmI AGTACT 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.