pycom15g15400

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Reverse (-)
10718307 .. 10718924
618 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 618 bp
ATGGTGGTGGGTGGGACTGACACTTCCTCCAACATAACTGAGTTTGCAATGGCTGAAATCATGAACAAACTAGAGATGATGAAAAAAGCCCAGCAAGAGTTAGAAGGCGTAGTTGGCAAACACAACATTGTAGAAGAATCCCACATCAACAAATTGCCATACTTACAAGCTGTGATGAAAGAAACTATGCGCATGCACCCAGCCTTGCCTTTGTTAGTCCCTCATTGCCCAAGTGAAACATGCATTGTGGGAGAGTACACCATTCCAAAAAGATCTCGGATTTTCATCAATGTTTGGGCCATACACAAAGACCCTTCAATTTGGGAAAACCCGTTGGAGTTCAATCCAAAGCGGTTCTTGGATAGCAAATGGGACTATAGTGGGAAAGACTTCAACTATTTTCCATTTGGGTCAGGCAAAAGAATATGTGTTGGAATTGCAATGGCTGAGAGGATGGTGATGCATTCACTTGCTACACTTTTGCATTCTTTTGATTGGAAATTGCCAGAGGGAGAGAAGTTGGATCTTTCTGAGAAGTTTGGGATTGTGTTGAAGAAGAAGATACCTTTGATTGCCATCCCAACTCCAAGGTTATCAGATCCAGCACTCTATGAGTAG

Protein Analysis

206

Amino Acids

23.39

Weight (kDa)

7.06

Isoelectric Point (pI)

46.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 1 - 187 3.9e-60 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000377)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12300 AT4G12310 AT4G12320 AT4G12330 AT4G22690 AT4G22710 AT5G44620
fragaria_vesca FvH4_3g36340 FvH4_4g05231 FvH4_5g00500 FvH4_5g00510 FvH4_7g17980
malus_domestica MD02G1257600.v1.1 MD04G1080300.v1.1 MD06G1075700.v1.1
prunus_persica Prupe.1G090700_v2.0.a1 Prupe.5G071500_v2.0.a1 Prupe.5G077600_v2.0.a1 Prupe.5G077700_v2.0.a1 Prupe.5G077800_v2.0.a1 Prupe.5G077900_v2.0.a1 Prupe.5G078100_v2.0.a1 Prupe.5G078200_v2.0.a1 Prupe.5G078300_v2.0.a1
pyrus_communis pycom04g07220 pycom04g07240 pycom06g05480 pycom15g15400
rosa_chinensis RchiOBHm_Chr5g0018741 RchiOBHm_Chr6g0248821 RchiOBHm_Chr7g0178901 RchiOBHm_Chr7g0201891 RchiOBHm_Chr7g0201961 RchiOBHm_Chr7g0201971 RchiOBHm_Chr7g0201981 RchiOBHm_Chr7g0201991 RchiOBHm_Chr7g0202001
rosa_laevigata RLG00000003634 RLG00000003636 RLG00000003637 RLG00000003638 RLG00000003644
rosa_multiflora Rmu_co8316029.1_g000001 Rmu_sc0000637.1_g000020 Rmu_sc0000637.1_g000025 Rmu_sc0000637.1_g000027 Rmu_sc0001030.1_g000027 Rmu_sc0006420.1_g000002 Rmu_sc0012276.1_g000002 Rmu_sc0012276.1_g000005 Rmu_sc0012276.1_g000011 Rmu_sc0012276.1_g000012 Rmu_sc0012276.1_g000017 Rmu_sc0014024.1_g000001 Rmu_ssc0000125.1_g000026
rosa_roxburghii Rroxscaffold_2G00077750 Rroxscaffold_2G00113690 Rroxscaffold_3G00254960 Rroxscaffold_3G00254970 Rroxscaffold_3G00254980 Rroxscaffold_3G00255010 Rroxscaffold_3G00255020 Rroxscaffold_5G00357760 Rroxscaffold_5G00357810
rosa_rugosa Rorug05G0288400 Rorug05G0288500 Rorug07G0066500 Rorug07G0066700 Rorug07G0066800 Rorug07G0066800 Rorug07G0066900 Rorug07G0066900 Rorug07G0067000 Rorug07G0067100 Rorug07G0067200.1
rosa_samantha Rh3DG308900 Rh4AG183200 Rh4CG451700 Rh5BG064200 Rh7AG193800 Rh7AG194000 Rh7AG194300 Rh7AG194400 Rh7BG195400 Rh7BG195600 Rh7BG195700 Rh7BG195800 Rh7BG195900 Rh7CG205300 Rh7CG205500 Rh7CG205600 Rh7CG205700 Rh7DG020100 Rh7DG199900 Rh7DG200600 Rh7DG200700 Rh7DG200900 Rh7DG201000 Rh7DG201100
rosa_wichuraiana Rw7G016940 Rw7G016980 Rw7G016990 Rw7G017010 Rw7G017020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 191
AciI CCGC 1 cut(s) 352
AclWI GGATC 2 cut(s) 531, 593
AfaI GTAC 1 cut(s) 257
AgsI TTSAA 4 cut(s) 318, 343, 394, 553
AjuI GAANNNNNNNTTGG 2 cut(s) 96, 128
AluBI AGCT 1 cut(s) 170
AluI AGCT 1 cut(s) 170
AlwI GGATC 2 cut(s) 531, 593
AoxI GGCC 1 cut(s) 297
Asp700I GAANNNNTTC 1 cut(s) 389
AspLEI GCGC 1 cut(s) 192
AspS9I GGNCC 1 cut(s) 297
AsuHPI GGTGA 1 cut(s) 469
BccI CCATC 2 cut(s) 448, 584
BfaI CTAG 1 cut(s) 71
BfmI CTRYAG 1 cut(s) 376
BglII AGATCT 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 297
BmsI GCATC 1 cut(s) 450
BsaBI GATNNNNATC 2 cut(s) 284, 575
BsaJI CCNNGG 1 cut(s) 587
BsaXI ACNNNNNCTCC 2 cut(s) 11, 41
Bse3DI GCAATG 3 cut(s) 54, 223, 447
Bse8I GATNNNNATC 2 cut(s) 284, 575
BseDI CCNNGG 1 cut(s) 587
BseGI GGATG 2 cut(s) 459, 576
BseJI GATNNNNATC 2 cut(s) 284, 575
BseMI GCAATG 3 cut(s) 54, 223, 447
BseMII CTCAG 3 cut(s) 30, 438, 522
BseYI CCCAGC 2 cut(s) 90, 199
BshFI GGCC 1 cut(s) 299
BslFI GGGAC 3 cut(s) 28, 203, 386
BsmFI GGGAC 3 cut(s) 28, 203, 386
BsmI GAATGC 2 cut(s) 463, 484
BsnI GGCC 1 cut(s) 299
Bsp143I GATC 3 cut(s) 272, 523, 598
BspACI CCGC 1 cut(s) 352
BspANI GGCC 1 cut(s) 299
BspCNI CTCAG 3 cut(s) 31, 439, 523
BspHI TCATGA 1 cut(s) 60
BspPI GGATC 2 cut(s) 531, 593
BsrDI GCAATG 3 cut(s) 54, 223, 447
BssECI CCNNGG 1 cut(s) 587
BssMI GATC 3 cut(s) 272, 523, 598
BssT1I CCWWGG 1 cut(s) 587
BstC8I GCNNGC 1 cut(s) 194
BstDEI CTNAG 3 cut(s) 39, 447, 531
BstF5I GGATG 2 cut(s) 459, 576
BstHHI GCGC 1 cut(s) 192
BstKTI GATC 3 cut(s) 275, 526, 601
BstMBI GATC 3 cut(s) 272, 523, 598
BstMWI GCNNNNNNNGC 1 cut(s) 114
BstNSI RCATGY 2 cut(s) 196, 243
BstSFI CTRYAG 1 cut(s) 376
BstX2I RGATCY 3 cut(s) 272, 523, 598
BstYI RGATCY 3 cut(s) 272, 523, 598
BsuRI GGCC 1 cut(s) 299
BtsCI GGATG 2 cut(s) 459, 576
Cac8I GCNNGC 1 cut(s) 194
CciI TCATGA 1 cut(s) 60
CfoI GCGC 1 cut(s) 192
Cfr13I GGNCC 1 cut(s) 297
Csp6I GTAC 1 cut(s) 256
CviAII CATG 3 cut(s) 61, 193, 240
CviJI RGCY 6 cut(s) 53, 89, 170, 203, 299, 446
CviKI_1 RGCY 6 cut(s) 53, 89, 170, 203, 299, 446
CviQI GTAC 1 cut(s) 256
DdeI CTNAG 3 cut(s) 39, 447, 531
DpnI GATC 3 cut(s) 274, 525, 600
DpnII GATC 3 cut(s) 272, 523, 598
Eco130I CCWWGG 1 cut(s) 587
EcoT14I CCWWGG 1 cut(s) 587
EcoT22I ATGCAT 2 cut(s) 245, 465
ErhI CCWWGG 1 cut(s) 587
FaeI CATG 3 cut(s) 64, 196, 243
FalI AAGNNNNNCTT 2 cut(s) 341, 373
FaqI GGGAC 3 cut(s) 28, 203, 386
FatI CATG 3 cut(s) 60, 192, 239
FokI GGATG 2 cut(s) 466, 563
FspAI RTGCGCAY 1 cut(s) 191
FspBI CTAG 1 cut(s) 71
FspI TGCGCA 1 cut(s) 191
GlaI GCGC 1 cut(s) 191
GsaI CCCAGC 2 cut(s) 94, 203
HaeIII GGCC 1 cut(s) 299
HhaI GCGC 1 cut(s) 192
Hin1II CATG 3 cut(s) 64, 196, 243
Hin6I GCGC 1 cut(s) 190
HinP1I GCGC 1 cut(s) 190
HinfI GANTC 1 cut(s) 137
HphI GGTGA 1 cut(s) 469
Hpy166II GTNNAC 1 cut(s) 258
Hpy188I TCNGA 3 cut(s) 279, 532, 598
Hpy188III TCNNGA 1 cut(s) 61
Hpy8I GTNNAC 1 cut(s) 258
HpyAV CCTTC 2 cut(s) 98, 324
HpyCH4V TGCA 6 cut(s) 47, 196, 243, 440, 463, 484
HpyF10VI GCNNNNNNNGC 1 cut(s) 114
HpyF3I CTNAG 3 cut(s) 39, 447, 531
Hsp92II CATG 3 cut(s) 64, 196, 243
HspAI GCGC 1 cut(s) 190
Kzo9I GATC 3 cut(s) 272, 523, 598
LpnPI CCDG 4 cut(s) 104, 213, 399, 519
LweI GCATC 1 cut(s) 450
MaeI CTAG 1 cut(s) 71
MalI GATC 3 cut(s) 274, 525, 600
MboI GATC 3 cut(s) 272, 523, 598
MboII GAAGA 4 cut(s) 146, 565, 568, 571
MflI RGATCY 3 cut(s) 272, 523, 598
MluCI AATT 4 cut(s) 152, 318, 435, 500
MmeI TCCRAC 4 cut(s) 54, 315, 412, 501
MnlI CCTC 4 cut(s) 37, 231, 444, 502
Mph1103I ATGCAT 2 cut(s) 245, 465
MroXI GAANNNNTTC 1 cut(s) 389
Mva1269I GAATGC 2 cut(s) 463, 484
MwoI GCNNNNNNNGC 1 cut(s) 114
NdeII GATC 3 cut(s) 272, 523, 598
NlaIII CATG 3 cut(s) 64, 196, 243
NsbI TGCGCA 1 cut(s) 191
NsiI ATGCAT 2 cut(s) 245, 465
NspI RCATGY 2 cut(s) 196, 243
PaeI GCATGC 1 cut(s) 196
PagI TCATGA 1 cut(s) 60
PctI GAATGC 2 cut(s) 463, 484
PdmI GAANNNNTTC 1 cut(s) 389
PfeI GAWTC 1 cut(s) 137
PspFI CCCAGC 2 cut(s) 90, 199
PspPI GGNCC 1 cut(s) 297
PsuI RGATCY 3 cut(s) 272, 523, 598
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
Sau3AI GATC 3 cut(s) 272, 523, 598
Sau96I GGNCC 1 cut(s) 297
SetI ASST 3 cut(s) 172, 568, 593
SfaNI GCATC 1 cut(s) 450
SfcI CTRYAG 1 cut(s) 376
SphI GCATGC 1 cut(s) 196
Sse9I AATT 4 cut(s) 152, 318, 435, 500
SsiI CCGC 1 cut(s) 352
SspMI CTAG 1 cut(s) 71
StyI CCWWGG 1 cut(s) 587
TasI AATT 4 cut(s) 152, 318, 435, 500
TatI WGTACW 1 cut(s) 255
TfiI GAWTC 1 cut(s) 137
TspDTI ATGAA 4 cut(s) 77, 95, 191, 274
XceI RCATGY 2 cut(s) 196, 243
XmnI GAANNNNTTC 1 cut(s) 389
XspI CTAG 1 cut(s) 71
Zsp2I ATGCAT 2 cut(s) 245, 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.