pycom16g17500

Sieve element occlusion

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0000511
Physical Location & Seq
Forward (+)
13704815 .. 13706140
1326 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1056 bp
ATGGAGGTTAGCATTGATGTGCTGAGGAGGAAGTATGTGCTTTTGTTCATTTCCACTCTTGACATTTCTGATGATGACATTTCGGTTATCAAACCAGTTTATGAGGGGACAAAGAAAGACGATAAGTATAAGATTGTGTGGATCCCTATTGTGGAGCAATGGACTGATGACCTACGAAAGAAGTTCGAAGTCTTGTGGGTCAAGATGCCATGGTACACTGTGCAGTATTTTGCGCCCGTAGCCGGCATCAGATTCATCAAGGAGGAGTGGCACTTCAAGGGCAAGCCAGCTGTGGTAGTGATGAACCCGCAAGGCAAGGTGGAAAATACGAATGCTCTCCACTTGATTCGGATTCATGGAATGAAGGCATTTCCTTTTCATAAGGGAATAAAAGATACTCTCACAAATGACAAAGAATGGATCGATCCCATTGTGAATGATATTCACCCAACCATACAGACCTGGATCAAAGAGGAGAAGTACATCTTCTTGTATGGAGGCAAAGACAATGACTGGATCCAGCAGATCACAGAGAAAGCAACTACCATTGCCAATGACCCCTTCATCAAGGAATTGAAGATCAATATTGAGCTATTTTGTGTTGGCAAGAGCCCGAAAGGCGGAGAAGACCTTGGAATTCTCGGGAGATTTTGGAATGGAATTGAGAGCTTGTTCTTCACCAAAGTCAACAAGCAAACTGACACTGTGACCAAAGAAGTCCAGAAGCTGCTTTCCTACAAAAATGAGGGTGGATGGGCTGTGCTTACTAAAGGGTCTACTGTGGTGGTGAGTGGCCATGGCTTCACAATCTTGAAGGTCCTCGACGACTTCGACACATGGAAGAACTTCATAAAGGAGAAGGGCTTTGAATTCTCGTTCAAAGCATACTACGAGAAGGTAATTCAGACCATGAGGCACTGCTGCCGCCTTGACATCCCGAGCGTTGCTGGAAAGGTCCCGGAGACCATGAAATGCCCAGAGTGTCCTCGCACCATGGAGACATTCGTGAGCTACAAGTGCTGCCACACTGATTCTCCCATCAACGCACATCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SEO_C SEO_N

Protein Analysis

352

Amino Acids

40.67

Weight (kDa)

8.29

Isoelectric Point (pI)

23.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SEO_C PF14577 140 - 206 5e-14 Sieve element occlusion C-terminus
SEO_C PF14577 215 - 342 1.2e-35 Sieve element occlusion C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000511)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02370 FvH4_4g02370 FvH4_4g02370 FvH4_4g02430 FvH4_4g02430 FvH4_4g02460 FvH4_4g02460 FvH4_4g02460 FvH4_4g02480 FvH4_4g02480 FvH4_4g02480 FvH4_4g02480 FvH4_6g05920
malus_domestica MD00G1111000.v1.1 MD08G1225800.v1.1 MD13G1205700.v1.1 MD13G1205800.v1.1 MD13G1205900.v1.1 MD13G1206000.v1.1 MD16G1207500.v1.1 MD16G1207600.v1.1
prunus_persica Prupe.1G028400_v2.0.a1 Prupe.1G028500_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028900_v2.0.a1 Prupe.1G029000_v2.0.a1 Prupe.1G029100_v2.0.a1
pyrus_communis pycom08g19680 pycom08g19730 pycom16g17460 pycom16g17500
rosa_chinensis RchiOBHm_Chr4g0389751 RchiOBHm_Chr4g0389771 RchiOBHm_Chr4g0389791 RchiOBHm_Chr4g0389861 RchiOBHm_Chr4g0389881 RchiOBHm_Chr4g0389901 RchiOBHm_Chr4g0412411
rosa_laevigata RLG00000008288 RLG00000009901 RLG00000009945 RLG00000009954 RLG00000009956 RLG00000009957 RLG00000009958 RLG00000019246
rosa_multiflora Rmu_co8275125.1_g000001 Rmu_sc0002083.1_g000003 Rmu_sc0002083.1_g000025 Rmu_sc0002604.1_g000016 Rmu_sc0004336.1_g000031 Rmu_sc0010423.1_g000003
rosa_roxburghii Rroxscaffold_5G00335790 Rroxscaffold_5G00335850 Rroxscaffold_5G00335970 Rroxscaffold_5G00335990
rosa_rugosa Rorug03G0325100 Rorug03G0325300 Rorug03G0325500.1 Rorug03G0326800 Rorug03G0327000 Rorug04G0104400
rosa_samantha Rh4AG029900 Rh4AG030000 Rh4AG030100 Rh4AG030200 Rh4AG030600 Rh4AG172900 Rh4BG023200 Rh4BG023900 Rh4BG024000 Rh4BG024100 Rh4BG172200 Rh4DG023300 Rh4DG023800 Rh4DG023900 Rh4DG024000 Rh4DG151600
rosa_wichuraiana Rw1G002330 Rw1G002340 Rw4G002260 Rw4G002270 Rw4G002280 Rw4G002300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 776
AciI CCGC 3 cut(s) 308, 621, 925
AclWI GGATC 7 cut(s) 136, 149, 419, 428, 473, 511, 524
AcoI YGGCCR 1 cut(s) 793
AcsI RAATTY 2 cut(s) 636, 869
AfaI GTAC 2 cut(s) 215, 482
AfiI CCNNNNNNNGG 3 cut(s) 151, 242, 620
AgsI TTSAA 5 cut(s) 277, 577, 814, 869, 880
AjnI CCWGG 1 cut(s) 461
AjuI GAANNNNNNNTTGG 2 cut(s) 545, 577
AluBI AGCT 5 cut(s) 290, 592, 669, 727, 1011
AluI AGCT 5 cut(s) 290, 592, 669, 727, 1011
Alw26I GTCTC 2 cut(s) 956, 992
AlwI GGATC 7 cut(s) 136, 149, 419, 428, 473, 511, 524
AlwNI CAGNNNCTG 1 cut(s) 727
Ama87I CYCGRG 2 cut(s) 641, 937
AoxI GGCC 1 cut(s) 793
ApeKI GCWGC 3 cut(s) 727, 921, 1020
ApoI RAATTY 2 cut(s) 636, 869
Asp700I GAANNNNTTC 1 cut(s) 845
AspLEI GCGC 1 cut(s) 235
AspS9I GGNCC 2 cut(s) 817, 955
AsuC2I CCSGG 1 cut(s) 959
AsuHPI GGTGA 3 cut(s) 437, 670, 799
AsuII TTCGAA 1 cut(s) 186
AvaI CYCGRG 2 cut(s) 641, 937
AvaII GGWCC 2 cut(s) 817, 955
BalI TGGCCA 1 cut(s) 795
BamHI GGATCC 2 cut(s) 141, 516
BanII GRGCYC 1 cut(s) 614
BbsI GAAGAC 1 cut(s) 633
BbvCI CCTCAGC 1 cut(s) 23
BbvI GCAGC 3 cut(s) 714, 908, 1007
BccI CCATC 2 cut(s) 747, 1046
BciT130I CCWGG 1 cut(s) 463
BcnI CCSGG 1 cut(s) 959
BcoDI GTCTC 2 cut(s) 956, 992
BglI GCCNNNNNGGC 1 cut(s) 618
BisI GCNGC 4 cut(s) 728, 922, 925, 1021
BlsI GCNGC 4 cut(s) 729, 923, 926, 1022
Bme1390I CCNGG 2 cut(s) 463, 959
Bme18I GGWCC 2 cut(s) 817, 955
BmeT110I CYCGRG 2 cut(s) 641, 937
BmgT120I GGNCC 2 cut(s) 817, 955
BmiI GGNNCC 3 cut(s) 143, 518, 957
BmrFI CCNGG 2 cut(s) 463, 959
BmsI GCATC 2 cut(s) 195, 255
BpiI GAAGAC 1 cut(s) 633
Bpu10I CCTNAGC 1 cut(s) 23
Bpu14I TTCGAA 1 cut(s) 186
BpuMI CCSGG 1 cut(s) 959
Bsa29I ATCGAT 1 cut(s) 423
BsaI GGTCTC 1 cut(s) 956
BsaJI CCNNGG 4 cut(s) 209, 631, 796, 993
BsaXI ACNNNNNCTCC 2 cut(s) 1018, 1048
Bsc4I CCNNNNNNNGG 3 cut(s) 151, 242, 620
Bse118I RCCGGY 1 cut(s) 242
Bse1I ACTGG 2 cut(s) 95, 518
Bse3DI GCAATG 2 cut(s) 164, 546
BseBI CCWGG 1 cut(s) 463
BseCI ATCGAT 1 cut(s) 423
BseDI CCNNGG 4 cut(s) 209, 631, 796, 993
BseGI GGATG 2 cut(s) 758, 933
BseLI CCNNNNNNNGG 3 cut(s) 151, 242, 620
BseMI GCAATG 2 cut(s) 164, 546
BseMII CTCAG 1 cut(s) 14
BseNI ACTGG 2 cut(s) 95, 518
BseRI GAGGAG 3 cut(s) 40, 278, 488
BseXI GCAGC 3 cut(s) 714, 908, 1007
BsgI GTGCAG 1 cut(s) 242
BshFI GGCC 1 cut(s) 795
BshVI ATCGAT 1 cut(s) 423
BsiHKCI CYCGRG 2 cut(s) 641, 937
BsiSI CCGG 2 cut(s) 243, 959
BslFI GGGAC 2 cut(s) 121, 941
BslI CCNNNNNNNGG 3 cut(s) 151, 242, 620
BsmAI GTCTC 2 cut(s) 956, 992
BsmFI GGGAC 2 cut(s) 121, 941
BsmI GAATGC 1 cut(s) 337
BsnI GGCC 1 cut(s) 795
Bso31I GGTCTC 1 cut(s) 956
BsoBI CYCGRG 2 cut(s) 641, 937
Bsp119I TTCGAA 1 cut(s) 186
Bsp1286I GDGCHC 1 cut(s) 614
Bsp143I GATC 7 cut(s) 141, 420, 424, 465, 516, 525, 579
Bsp19I CCATGG 3 cut(s) 209, 796, 993
BspACI CCGC 3 cut(s) 308, 621, 925
BspANI GGCC 1 cut(s) 795
BspCNI CTCAG 1 cut(s) 15
BspDI ATCGAT 1 cut(s) 423
BspLI GGNNCC 3 cut(s) 143, 518, 957
BspPI GGATC 7 cut(s) 136, 149, 419, 428, 473, 511, 524
BspT104I TTCGAA 1 cut(s) 186
BspTNI GGTCTC 1 cut(s) 956
BsrDI GCAATG 2 cut(s) 164, 546
BsrFI RCCGGY 1 cut(s) 242
BsrI ACTGG 2 cut(s) 95, 518
BssAI RCCGGY 1 cut(s) 242
BssECI CCNNGG 4 cut(s) 209, 631, 796, 993
BssMI GATC 7 cut(s) 141, 420, 424, 465, 516, 525, 579
BssT1I CCWWGG 4 cut(s) 209, 631, 796, 993
Bst2UI CCWGG 1 cut(s) 463
Bst4CI ACNGT 3 cut(s) 220, 706, 781
BstBI TTCGAA 1 cut(s) 186
BstC8I GCNNGC 3 cut(s) 244, 284, 288
BstDEI CTNAG 1 cut(s) 23
BstDSI CCRYGG 3 cut(s) 209, 796, 993
BstF5I GGATG 2 cut(s) 758, 933
BstHHI GCGC 1 cut(s) 235
BstKTI GATC 7 cut(s) 144, 423, 427, 468, 519, 528, 582
BstMAI GTCTC 2 cut(s) 956, 992
BstMBI GATC 7 cut(s) 141, 420, 424, 465, 516, 525, 579
BstMWI GCNNNNNNNGC 3 cut(s) 239, 618, 1017
BstNI CCWGG 1 cut(s) 463
BstSCI CCNGG 2 cut(s) 461, 957
BstV1I GCAGC 3 cut(s) 714, 908, 1007
BstV2I GAAGAC 1 cut(s) 633
BstX2I RGATCY 2 cut(s) 141, 516
BstYI RGATCY 2 cut(s) 141, 516
Bsu15I ATCGAT 1 cut(s) 423
BsuRI GGCC 1 cut(s) 795
BsuTUI ATCGAT 1 cut(s) 423
BtgI CCRYGG 3 cut(s) 209, 796, 993
BtsCI GGATG 2 cut(s) 758, 933
BtsI GCAGTG 1 cut(s) 916
BtsIMutI CAGTG 4 cut(s) 216, 702, 916, 1026
Cac8I GCNNGC 3 cut(s) 244, 284, 288
CaiI CAGNNNCTG 1 cut(s) 727
CfoI GCGC 1 cut(s) 235
Cfr10I RCCGGY 1 cut(s) 242
Cfr13I GGNCC 2 cut(s) 817, 955
ClaI ATCGAT 1 cut(s) 423
Csp6I GTAC 2 cut(s) 214, 481
CviAII CATG 7 cut(s) 210, 356, 797, 837, 910, 967, 994
CviQI GTAC 2 cut(s) 214, 481
DdeI CTNAG 1 cut(s) 23
DpnI GATC 7 cut(s) 143, 422, 426, 467, 518, 527, 581
DpnII GATC 7 cut(s) 141, 420, 424, 465, 516, 525, 579
EaeI YGGCCR 1 cut(s) 793
EciI GGCGGA 1 cut(s) 636
Eco130I CCWWGG 4 cut(s) 209, 631, 796, 993
Eco24I GRGCYC 1 cut(s) 614
Eco31I GGTCTC 1 cut(s) 956
Eco47I GGWCC 2 cut(s) 817, 955
Eco88I CYCGRG 2 cut(s) 641, 937
EcoO109I RGGNCCY 2 cut(s) 817, 955
EcoRI GAATTC 2 cut(s) 636, 869
EcoRII CCWGG 1 cut(s) 461
EcoT14I CCWWGG 4 cut(s) 209, 631, 796, 993
EcoT38I GRGCYC 1 cut(s) 614
ErhI CCWWGG 4 cut(s) 209, 631, 796, 993
FaeI CATG 7 cut(s) 213, 359, 800, 840, 913, 970, 997
FalI AAGNNNNNCTT 2 cut(s) 470, 502
FaqI GGGAC 2 cut(s) 121, 941
FatI CATG 7 cut(s) 209, 355, 796, 836, 909, 966, 993
FauI CCCGC 1 cut(s) 315
FblI GTMKAC 1 cut(s) 776
Fnu4HI GCNGC 4 cut(s) 728, 922, 925, 1021
FokI GGATG 2 cut(s) 765, 920
FriOI GRGCYC 1 cut(s) 614
Fsp4HI GCNGC 4 cut(s) 728, 922, 925, 1021
GlaI GCGC 1 cut(s) 234
GluI GCNGC 4 cut(s) 728, 922, 925, 1021
HaeIII GGCC 1 cut(s) 795
HapII CCGG 2 cut(s) 243, 959
HhaI GCGC 1 cut(s) 235
Hin1II CATG 7 cut(s) 213, 359, 800, 840, 913, 970, 997
Hin6I GCGC 1 cut(s) 233
HinP1I GCGC 1 cut(s) 233
HincII GTYRAC 1 cut(s) 688
HindII GTYRAC 1 cut(s) 688
HinfI GANTC 4 cut(s) 252, 346, 352, 1031
HpaII CCGG 2 cut(s) 243, 959
HphI GGTGA 3 cut(s) 437, 670, 799
Hpy166II GTNNAC 3 cut(s) 216, 688, 777
Hpy188I TCNGA 4 cut(s) 70, 251, 351, 906
Hpy188III TCNNGA 7 cut(s) 59, 202, 643, 721, 811, 937, 1006
Hpy8I GTNNAC 3 cut(s) 216, 688, 777
Hpy99I CGWCG 1 cut(s) 827
HpyAV CCTTC 5 cut(s) 358, 571, 808, 853, 889
HpyCH4III ACNGT 3 cut(s) 220, 706, 781
HpyCH4V TGCA 1 cut(s) 223
HpyF10VI GCNNNNNNNGC 3 cut(s) 239, 618, 1017
HpyF3I CTNAG 1 cut(s) 23
Hsp92II CATG 7 cut(s) 213, 359, 800, 840, 913, 970, 997
HspAI GCGC 1 cut(s) 233
KroI GCCGGC 1 cut(s) 242
KroNI GCCGGC 1 cut(s) 244
Kzo9I GATC 7 cut(s) 141, 420, 424, 465, 516, 525, 579
LmnI GCTCC 1 cut(s) 154
Lsp1109I GCAGC 3 cut(s) 714, 908, 1007
LweI GCATC 2 cut(s) 195, 255
MaeIII GTNAC 1 cut(s) 706
MalI GATC 7 cut(s) 143, 422, 426, 467, 518, 527, 581
MboI GATC 7 cut(s) 141, 420, 424, 465, 516, 525, 579
MboII GAAGA 5 cut(s) 478, 589, 638, 667, 853
MflI RGATCY 2 cut(s) 141, 516
MhlI GDGCHC 1 cut(s) 614
MlsI TGGCCA 1 cut(s) 795
MluCI AATT 5 cut(s) 572, 636, 660, 869, 900
MluNI TGGCCA 1 cut(s) 795
Mox20I TGGCCA 1 cut(s) 795
MroNI GCCGGC 1 cut(s) 242
MroXI GAANNNNTTC 1 cut(s) 845
MscI TGGCCA 1 cut(s) 795
MslI CAYNNNNRTG 1 cut(s) 17
Msp20I TGGCCA 1 cut(s) 795
MspA1I CMGCKG 1 cut(s) 290
MspI CCGG 2 cut(s) 243, 959
MspR9I CCNGG 2 cut(s) 463, 959
Mva1269I GAATGC 1 cut(s) 337
MvaI CCWGG 1 cut(s) 463
MwoI GCNNNNNNNGC 3 cut(s) 239, 618, 1017
NaeI GCCGGC 1 cut(s) 244
NciI CCSGG 1 cut(s) 959
NcoI CCATGG 3 cut(s) 209, 796, 993
NdeII GATC 7 cut(s) 141, 420, 424, 465, 516, 525, 579
NgoMIV GCCGGC 1 cut(s) 242
NlaIII CATG 7 cut(s) 213, 359, 800, 840, 913, 970, 997
NlaIV GGNNCC 3 cut(s) 143, 518, 957
NmuCI GTSAC 1 cut(s) 706
NspV TTCGAA 1 cut(s) 186
PcsI WCGNNNNNNNCGW 1 cut(s) 828
PctI GAATGC 1 cut(s) 337
PdiI GCCGGC 1 cut(s) 244
PdmI GAANNNNTTC 1 cut(s) 845
PfeI GAWTC 4 cut(s) 252, 346, 352, 1031
PfoI TCCNGGA 1 cut(s) 957
PkrI GCNGC 4 cut(s) 729, 923, 926, 1022
PpuMI RGGWCCY 2 cut(s) 817, 955
Psp5II RGGWCCY 2 cut(s) 817, 955
Psp6I CCWGG 1 cut(s) 461
PspGI CCWGG 1 cut(s) 461
PspN4I GGNNCC 3 cut(s) 143, 518, 957
PspPI GGNCC 2 cut(s) 817, 955
PspPPI RGGWCCY 2 cut(s) 817, 955
PstNI CAGNNNCTG 1 cut(s) 727
PsuI RGATCY 2 cut(s) 141, 516
PvuII CAGCTG 1 cut(s) 290
RsaI GTAC 2 cut(s) 215, 482
RsaNI GTAC 2 cut(s) 214, 481
RseI CAYNNNNRTG 1 cut(s) 17
SatI GCNGC 4 cut(s) 728, 922, 925, 1021
Sau3AI GATC 7 cut(s) 141, 420, 424, 465, 516, 525, 579
Sau96I GGNCC 2 cut(s) 817, 955
ScrFI CCNGG 2 cut(s) 463, 959
SduI GDGCHC 1 cut(s) 614
SfaNI GCATC 2 cut(s) 195, 255
SfuI TTCGAA 1 cut(s) 186
SinI GGWCC 2 cut(s) 817, 955
SmiMI CAYNNNNRTG 1 cut(s) 17
Sse9I AATT 5 cut(s) 572, 636, 660, 869, 900
SsiI CCGC 3 cut(s) 308, 621, 925
SspI AATATT 1 cut(s) 586
StyD4I CCNGG 2 cut(s) 461, 957
StyI CCWWGG 4 cut(s) 209, 631, 796, 993
TaaI ACNGT 3 cut(s) 220, 706, 781
TaqI TCGA 4 cut(s) 186, 423, 822, 831
TasI AATT 5 cut(s) 572, 636, 660, 869, 900
TatI WGTACW 1 cut(s) 480
TauI GCSGC 1 cut(s) 927
TfiI GAWTC 4 cut(s) 252, 346, 352, 1031
TscAI CASTG 4 cut(s) 223, 709, 923, 1033
TseFI GTSAC 1 cut(s) 706
TseI GCWGC 3 cut(s) 727, 921, 1020
Tsp45I GTSAC 1 cut(s) 706
TspDTI ATGAA 9 cut(s) 37, 244, 317, 344, 368, 377, 553, 838, 983
TspRI CASTG 4 cut(s) 223, 709, 923, 1033
VpaK11BI GGWCC 2 cut(s) 817, 955
XapI RAATTY 2 cut(s) 636, 869
XmiI GTMKAC 1 cut(s) 776
XmnI GAANNNNTTC 1 cut(s) 845
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.