RchiOBHm_Chr1g0350151

Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
43261245 .. 43266298
5054 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 513 bp
ATGTGTAAGGTTAGTGTCGAGAAGCCCTCAGAAGCAGAGGGCCACAATTCCTTTGAGAAAGCCCTCACAATTCCTTTGAGAAGCCCTCAGAAGCAAAGGGCCACAATTCCTTTCAAACCACTGAGCTTCTCTCTATTTTGCTTCAATACCAGAAATCTACTTTCTCTTGGAGGTGGGATCAATTCAGATAATTCTTTGCAATACATAGAAGACGGGGCTAGCCACGTCATTGTCACTTCTTATGTATTTAATAATGGGCAAAACCTTGAAAGGCTTAAAGATCTTGTTCGTGTTGTTGGAAAAGAAAGGCTTGTTTTAGACCTTAGCTGTAGAAAGAGGGAAGGTAAATATGCAATTGTCACAGATAGATGGCAAAAGTTCAGTGACGTGTATCTTGACAAGGAAATATTAGACTTCCTTATGCAGACGAGTTTCTGGTACATGGTGTCGATGTGGAAGGGAAAAAATCACTATCTTCTCTTTGATTTTCCAACACCAGGAATATTATCATGA

Protein Analysis

170

Amino Acids

19.55

Weight (kDa)

8.96

Isoelectric Point (pI)

36.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_biosynth PF00977 54 - 132 3.3e-06 Histidine biosynthesis protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 185
AfaI GTAC 1 cut(s) 440
AfiI CCNNNNNNNGG 1 cut(s) 497
AflIII ACRYGT 1 cut(s) 387
AgsI TTSAA 3 cut(s) 115, 145, 269
AjiI CACGTC 2 cut(s) 226, 388
AjnI CCWGG 1 cut(s) 496
AluBI AGCT 2 cut(s) 126, 327
AluI AGCT 2 cut(s) 126, 327
AlwI GGATC 1 cut(s) 185
AoxI GGCC 2 cut(s) 40, 99
AspS9I GGNCC 2 cut(s) 40, 99
AsuNHI GCTAGC 1 cut(s) 218
BbsI GAAGAC 1 cut(s) 216
BccI CCATC 1 cut(s) 363
BciT130I CCWGG 1 cut(s) 498
BfaI CTAG 1 cut(s) 219
BfmI CTRYAG 1 cut(s) 328
BglII AGATCT 1 cut(s) 280
Bme1390I CCNGG 1 cut(s) 498
BmgBI CACGTC 2 cut(s) 226, 388
BmgT120I GGNCC 2 cut(s) 40, 99
BmrFI CCNGG 1 cut(s) 498
BmtI GCTAGC 1 cut(s) 222
BpiI GAAGAC 1 cut(s) 216
BplI GAGNNNNNCTC 6 cut(s) 11, 43, 70, 102, 115, 147
Bpu10I CCTNAGC 1 cut(s) 323
Bsc4I CCNNNNNNNGG 1 cut(s) 497
BseBI CCWGG 1 cut(s) 498
BseLI CCNNNNNNNGG 1 cut(s) 497
BseMII CTCAG 3 cut(s) 42, 101, 113
BshFI GGCC 2 cut(s) 42, 101
BslI CCNNNNNNNGG 1 cut(s) 497
BsnI GGCC 2 cut(s) 42, 101
Bsp143I GATC 2 cut(s) 177, 280
BspANI GGCC 2 cut(s) 42, 101
BspCNI CTCAG 3 cut(s) 41, 100, 114
BspHI TCATGA 1 cut(s) 509
BspOI GCTAGC 1 cut(s) 222
BspPI GGATC 1 cut(s) 185
BssMI GATC 2 cut(s) 177, 280
Bst2UI CCWGG 1 cut(s) 498
BstC8I GCNNGC 1 cut(s) 220
BstDEI CTNAG 4 cut(s) 28, 87, 122, 323
BstKTI GATC 2 cut(s) 180, 283
BstMBI GATC 2 cut(s) 177, 280
BstNI CCWGG 1 cut(s) 498
BstSCI CCNGG 1 cut(s) 496
BstSFI CTRYAG 1 cut(s) 328
BstV2I GAAGAC 1 cut(s) 216
BstX2I RGATCY 1 cut(s) 280
BstYI RGATCY 1 cut(s) 280
BsuRI GGCC 2 cut(s) 42, 101
BtrI CACGTC 2 cut(s) 226, 388
BtsIMutI CAGTG 2 cut(s) 119, 388
Cac8I GCNNGC 1 cut(s) 220
CciI TCATGA 1 cut(s) 509
Cfr13I GGNCC 2 cut(s) 40, 99
Csp6I GTAC 1 cut(s) 439
CviAII CATG 2 cut(s) 442, 510
CviQI GTAC 1 cut(s) 439
DdeI CTNAG 4 cut(s) 28, 87, 122, 323
DpnI GATC 2 cut(s) 179, 282
DpnII GATC 2 cut(s) 177, 280
EcoRII CCWGG 1 cut(s) 496
FaeI CATG 2 cut(s) 445, 513
FaiI YATR 6 cut(s) 206, 243, 351, 422, 443, 511
FalI AAGNNNNNCTT 2 cut(s) 294, 326
FatI CATG 2 cut(s) 441, 509
FspBI CTAG 1 cut(s) 219
HaeIII GGCC 2 cut(s) 42, 101
Hin1II CATG 2 cut(s) 445, 513
Hpy188I TCNGA 3 cut(s) 31, 90, 187
Hpy188III TCNNGA 3 cut(s) 19, 395, 510
HpyAV CCTTC 2 cut(s) 335, 451
HpyCH4IV ACGT 2 cut(s) 225, 387
HpyCH4V TGCA 3 cut(s) 199, 353, 424
HpyF3I CTNAG 4 cut(s) 28, 87, 122, 323
HpySE526I ACGT 2 cut(s) 225, 387
Hsp92II CATG 2 cut(s) 445, 513
Kzo9I GATC 2 cut(s) 177, 280
LpnPI CCDG 3 cut(s) 163, 421, 483
MaeI CTAG 1 cut(s) 219
MaeII ACGT 2 cut(s) 225, 387
MaeIII GTNAC 3 cut(s) 232, 358, 383
MalI GATC 2 cut(s) 179, 282
MboI GATC 2 cut(s) 177, 280
MboII GAAGA 2 cut(s) 221, 467
MfeI CAATTG 1 cut(s) 354
MflI RGATCY 1 cut(s) 280
MluCI AATT 6 cut(s) 46, 69, 105, 181, 190, 354
MmeI TCCRAC 1 cut(s) 277
MnlI CCTC 6 cut(s) 31, 37, 74, 96, 164, 330
MseI TTAA 2 cut(s) 249, 276
MspR9I CCNGG 1 cut(s) 498
MunI CAATTG 1 cut(s) 354
MvaI CCWGG 1 cut(s) 498
NdeII GATC 2 cut(s) 177, 280
NheI GCTAGC 1 cut(s) 218
NlaIII CATG 2 cut(s) 445, 513
NmuCI GTSAC 3 cut(s) 232, 358, 383
PagI TCATGA 1 cut(s) 509
Psp6I CCWGG 1 cut(s) 496
PspGI CCWGG 1 cut(s) 496
PspPI GGNCC 2 cut(s) 40, 99
PsuI RGATCY 1 cut(s) 280
RsaI GTAC 1 cut(s) 440
RsaNI GTAC 1 cut(s) 439
SaqAI TTAA 2 cut(s) 249, 276
Sau3AI GATC 2 cut(s) 177, 280
Sau96I GGNCC 2 cut(s) 40, 99
ScrFI CCNGG 1 cut(s) 498
SetI ASST 9 cut(s) 12, 128, 175, 228, 267, 324, 329, 346, 390
SfcI CTRYAG 1 cut(s) 328
Sse9I AATT 6 cut(s) 46, 69, 105, 181, 190, 354
SspI AATATT 2 cut(s) 408, 504
SspMI CTAG 1 cut(s) 219
StyD4I CCNGG 1 cut(s) 496
TaiI ACGT 2 cut(s) 228, 390
TaqI TCGA 2 cut(s) 18, 449
TasI AATT 6 cut(s) 46, 69, 105, 181, 190, 354
Tru1I TTAA 2 cut(s) 249, 276
Tru9I TTAA 2 cut(s) 249, 276
TscAI CASTG 2 cut(s) 126, 388
TseFI GTSAC 3 cut(s) 232, 358, 383
Tsp45I GTSAC 3 cut(s) 232, 358, 383
TspRI CASTG 2 cut(s) 126, 388
XspI CTAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.