RchiOBHm_Chr0c11g0499381

No description available

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_chinensis
Unknown
OG0000708
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 333 bp
ATGTGCGAGGCTACAAGTAGCTCAGGATTATGCACCCCCAGCCTGAAGTCCCACTTTACCTATCAGGTCATGGCATCCAGAGAAGCAGCAGCAGTAGCAGCATTAGCCTCATCGCCAAAGCCAAATAACACCATTGAGACCCCGATTACTGTCATCAGCTGCAAGGACTGGTCACCCCAAGATGATGGCATTGAGGTTGTCTTGCCTTCAACTGAAATACCTTCATCGAAGGAAGATGTGGATGCATCCGGCACTGCTTTGCTGAGTCTTGTCTATGGTCCTTCTACTAGAAGAAGGAGATTGCCACTGTTTACTGAAATTTACCCAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 ko05166 ko05167 map04218 map05166 map05167
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

110

Amino Acids

11.79

Weight (kDa)

4.91

Isoelectric Point (pI)

74.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 318
AcuI CTGAAG 1 cut(s) 65
AgsI TTSAA 1 cut(s) 210
AluBI AGCT 2 cut(s) 21, 159
AluI AGCT 2 cut(s) 21, 159
Alw26I GTCTC 1 cut(s) 131
ApeKI GCWGC 4 cut(s) 86, 89, 98, 159
ApoI RAATTY 1 cut(s) 318
AspS9I GGNCC 1 cut(s) 278
AsuHPI GGTGA 1 cut(s) 165
AvaII GGWCC 1 cut(s) 278
BbvI GCAGC 4 cut(s) 98, 101, 110, 146
BccI CCATC 1 cut(s) 179
BcoDI GTCTC 1 cut(s) 131
BfaI CTAG 1 cut(s) 288
BisI GCNGC 4 cut(s) 87, 90, 99, 160
BlsI GCNGC 4 cut(s) 88, 91, 100, 161
Bme18I GGWCC 1 cut(s) 278
BmgT120I GGNCC 1 cut(s) 278
BmsI GCATC 3 cut(s) 83, 232, 254
Bpu10I CCTNAGC 1 cut(s) 22
BsaI GGTCTC 1 cut(s) 131
Bse1I ACTGG 1 cut(s) 173
BseGI GGATG 3 cut(s) 74, 245, 247
BseMII CTCAG 2 cut(s) 36, 254
BseNI ACTGG 1 cut(s) 173
BseXI GCAGC 4 cut(s) 98, 101, 110, 146
BseYI CCCAGC 1 cut(s) 38
BsiSI CCGG 1 cut(s) 249
BslFI GGGAC 1 cut(s) 34
BsmAI GTCTC 1 cut(s) 131
BsmFI GGGAC 1 cut(s) 34
Bso31I GGTCTC 1 cut(s) 131
BspCNI CTCAG 2 cut(s) 35, 255
BspTNI GGTCTC 1 cut(s) 131
BsrI ACTGG 1 cut(s) 173
Bst4CI ACNGT 2 cut(s) 151, 309
BstDEI CTNAG 2 cut(s) 22, 263
BstEII GGTNACC 1 cut(s) 171
BstF5I GGATG 3 cut(s) 74, 245, 247
BstMAI GTCTC 1 cut(s) 131
BstMWI GCNNNNNNNGC 4 cut(s) 39, 95, 98, 104
BstPI GGTNACC 1 cut(s) 171
BstV1I GCAGC 4 cut(s) 98, 101, 110, 146
BstXI CCANNNNNNTGG 1 cut(s) 185
BtgZI GCGATG 1 cut(s) 96
BtsCI GGATG 3 cut(s) 74, 245, 247
BtsI GCAGTG 1 cut(s) 252
BtsIMutI CAGTG 2 cut(s) 252, 305
Cfr13I GGNCC 1 cut(s) 278
CviAII CATG 1 cut(s) 70
CviJI RGCY 6 cut(s) 11, 21, 42, 107, 121, 159
CviKI_1 RGCY 6 cut(s) 11, 21, 42, 107, 121, 159
DdeI CTNAG 2 cut(s) 22, 263
Eco31I GGTCTC 1 cut(s) 131
Eco47I GGWCC 1 cut(s) 278
Eco57I CTGAAG 1 cut(s) 65
Eco91I GGTNACC 1 cut(s) 171
EcoO65I GGTNACC 1 cut(s) 171
EcoT22I ATGCAT 1 cut(s) 247
FaeI CATG 1 cut(s) 73
FaiI YATR 3 cut(s) 31, 71, 276
FalI AAGNNNNNCTT 2 cut(s) 38, 70
FaqI GGGAC 1 cut(s) 34
FatI CATG 1 cut(s) 69
Fnu4HI GCNGC 4 cut(s) 87, 90, 99, 160
FokI GGATG 3 cut(s) 61, 232, 254
Fsp4HI GCNGC 4 cut(s) 87, 90, 99, 160
FspBI CTAG 1 cut(s) 288
GluI GCNGC 4 cut(s) 87, 90, 99, 160
GsaI CCCAGC 1 cut(s) 42
HapII CCGG 1 cut(s) 249
Hin1II CATG 1 cut(s) 73
HinfI GANTC 1 cut(s) 265
HpaII CCGG 1 cut(s) 249
HphI GGTGA 1 cut(s) 165
Hpy166II GTNNAC 1 cut(s) 312
Hpy188III TCNNGA 2 cut(s) 24, 78
Hpy8I GTNNAC 1 cut(s) 312
HpyAV CCTTC 5 cut(s) 216, 223, 231, 288, 291
HpyCH4III ACNGT 2 cut(s) 151, 309
HpyCH4V TGCA 3 cut(s) 33, 162, 245
HpyF10VI GCNNNNNNNGC 4 cut(s) 39, 95, 98, 104
HpyF3I CTNAG 2 cut(s) 22, 263
Hsp92II CATG 1 cut(s) 73
LpnPI CCDG 7 cut(s) 9, 50, 52, 56, 91, 154, 262
Lsp1109I GCAGC 4 cut(s) 98, 101, 110, 146
LweI GCATC 3 cut(s) 83, 232, 254
MaeI CTAG 1 cut(s) 288
MaeIII GTNAC 1 cut(s) 171
MboII GAAGA 2 cut(s) 245, 303
MluCI AATT 1 cut(s) 318
MlyI GAGTC 1 cut(s) 274
MnlI CCTC 2 cut(s) 118, 187
Mph1103I ATGCAT 1 cut(s) 247
MspA1I CMGCKG 1 cut(s) 159
MspI CCGG 1 cut(s) 249
MwoI GCNNNNNNNGC 4 cut(s) 39, 95, 98, 104
NlaIII CATG 1 cut(s) 73
NmuCI GTSAC 1 cut(s) 171
NsiI ATGCAT 1 cut(s) 247
PkrI GCNGC 4 cut(s) 88, 91, 100, 161
PleI GAGTC 1 cut(s) 273
PpsI GAGTC 1 cut(s) 273
PspEI GGTNACC 1 cut(s) 171
PspFI CCCAGC 1 cut(s) 38
PspPI GGNCC 1 cut(s) 278
PvuII CAGCTG 1 cut(s) 159
SatI GCNGC 4 cut(s) 87, 90, 99, 160
Sau96I GGNCC 1 cut(s) 278
SchI GAGTC 1 cut(s) 274
SetI ASST 6 cut(s) 23, 62, 69, 161, 198, 223
SfaNI GCATC 3 cut(s) 83, 232, 254
SinI GGWCC 1 cut(s) 278
Sse9I AATT 1 cut(s) 318
SspMI CTAG 1 cut(s) 288
TaaI ACNGT 2 cut(s) 151, 309
TaqI TCGA 1 cut(s) 227
TasI AATT 1 cut(s) 318
TscAI CASTG 2 cut(s) 259, 312
TseFI GTSAC 1 cut(s) 171
TseI GCWGC 4 cut(s) 86, 89, 98, 159
Tsp45I GTSAC 1 cut(s) 171
TspDTI ATGAA 1 cut(s) 213
TspRI CASTG 2 cut(s) 259, 312
VpaK11BI GGWCC 1 cut(s) 278
XapI RAATTY 1 cut(s) 318
XspI CTAG 1 cut(s) 288
Zsp2I ATGCAT 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.