Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001086

Physical Location & Seq

Genomic Coordinates Forward (+)

12044872 .. 12045879

Gene Structure 1008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G33220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGTCTATTCCTCTAAGAAGCTGTTCTTGTTCTTCCTCTCGTGCATTATGCTGACTTTCAACTATAACACTAGTGGCTTCGTAGCCGCAGCAAATAGCATAGGCTTGAACTACGGCCTCCTCGGAGATAACTTCCCAACTCCATCCAATGTTCTCAACCTTTACAAGTCCATAGGCATTACAAAAATCCGAATCTTCGACCCAAAAACAGAGGTTCTTAACGCCTTACGCGGCCACCGTAATATTGAAGTCACTGTTGGCGTGAGGGACCAGGACTTGGGTGCTCTTTCAGCTAACGAAGAAGCTGTTAAGGGCTGGTTTGCAACCAACATCGAGCCTTACTTAGCCGATGTCAACATTGCGTTCATTACTGTTGGTAATGAAGTCATCCCCGGACCAATCGGTCCTCAAGTGCTTCCGGTCATGCAGTCTCTTACCATCCTCGTCAAGTCGATGAACCTTCCCATCTCGATAAGCACCGTGGTGGCTATGTCGAATCTTGAGCAATCATACCCACCTTCTGCTGGAGAGTTCACGTCTCAAGCGCGAGAACAACTTGTCCCCGTGCTGAAACTATTGTCTCAAACAAGTACGCCTATTCTCGTCAATATTTACCCTTACTTTCCTTACGCATCCGACCCAACGAACATCCCTCTAGACTATGCTACCTTCAACACTAAGGCCACCGTCGTCCAAGATGGACCATTGGGCTATTCAAACATGTTTGATGCAATCTTTGACGCATTCGTGTGGGCAATGGAGAAGGAAGGCGTGAAAGATTTACCCATGGTGGTGTCCGAGACCGGATGGCCATCTGCCGGAAATGGGAACTTAACCACACCGGATATCGCGGGTACTTACAACAGAAATTTCGTGAAACATATAGTAAGCGGGAAGGGAACGCCTAAGCGACCCAACAATGGAATGGATGGGTTTTTATTTGCAACGTTCAACGAAAATCAAAAGCCGGCCGGGACTGATATGAAGCCCATCTATAAGCTATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008422 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

335

Amino Acids

36.61

Weight (kDa)

5.51

Isoelectric Point (pI)

36.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	34 - 325	1.7e-75	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33220 AT5G20330 AT5G20340 AT5G20390 AT5G20560
fragaria_vesca	FvH4_1g08530 FvH4_7g03000
malus_domestica	MD00G1142700.v1.1 MD00G1142800.v1.1 MD02G1089200.v1.1 MD02G1089400.v1.1 MD02G1089600.v1.1 MD15G1216300.v1.1
prunus_persica	Prupe.7G200400_v2.0.a1 Prupe.7G200500_v2.0.a1 Prupe.7G200700_v2.0.a1
pyrus_communis	pycom02g07140
rosa_chinensis	RchiOBHm_Chr2g0094651 RchiOBHm_Chr2g0094671 RchiOBHm_Chr2g0094681 RchiOBHm_Chr2g0094691 RchiOBHm_Chr2g0094721 RchiOBHm_Chr6g0274281
rosa_laevigata	RLG00000013556 RLG00000016508 RLG00000016509 RLG00000016513
rosa_multiflora	Rmu_sc0004359.1_g000021 Rmu_sc0004359.1_g000026 Rmu_sc0004359.1_g000028 Rmu_sc0005132.1_g000025 Rmu_sc0006422.1_g000002 Rmu_sc0006422.1_g000003 Rmu_sc0006422.1_g000013
rosa_roxburghii	Rroxscaffold_2G00147000 Rroxscaffold_2G00147010 Rroxscaffold_2G00147020
rosa_rugosa	Rorug02G0045800 Rorug02G0046000 Rorug02G0046200 Rorug06G0080800
rosa_samantha	Rh2AG093400 Rh2AG093500 Rh2AG093600 Rh2BG093800 Rh2BG093900 Rh2BG094100 Rh2CG096300 Rh2CG096400 Rh2CG096500 Rh2DG092600 Rh2DG092700 Rh2DG092800 Rh2DG093000 Rh6AG195500
rosa_wichuraiana	Rw0G003530 Rw0G003540 Rw0G004780 Rw6G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	402
AccB7I	CCANNNNNTGG	1 cut(s)	277
AccII	CGCG	3 cut(s)	231, 547, 851
AciI	CCGC	4 cut(s)	87, 231, 851, 891
AclI	AACGTT	1 cut(s)	947
AcoI	YGGCCR	3 cut(s)	232, 809, 969
AcsI	RAATTY	1 cut(s)	868
AfaI	GTAC	2 cut(s)	592, 856
AfiI	CCNNNNNNNGG	5 cut(s)	277, 524, 818, 825, 920
AflIII	ACRYGT	1 cut(s)	720
AgsI	TTSAA	6 cut(s)	61, 109, 248, 673, 717, 952
AhlI	ACTAGT	1 cut(s)	71
AjiI	CACGTC	1 cut(s)	537
AjnI	CCWGG	1 cut(s)	270
AjuI	GAANNNNNNNTTGG	2 cut(s)	240, 272
AleI	CACNNNNGTG	1 cut(s)	482
AloI	GAACNNNNNNTCC	2 cut(s)	543, 575
AluBI	AGCT	4 cut(s)	22, 293, 305, 1000
AluI	AGCT	4 cut(s)	22, 293, 305, 1000
Alw21I	GWGCWC	1 cut(s)	286
Alw26I	GTCTC	4 cut(s)	435, 543, 585, 794
AoxI	GGCC	5 cut(s)	115, 232, 681, 809, 969
ApeKI	GCWGC	1 cut(s)	89
ApoI	RAATTY	1 cut(s)	868
Asp700I	GAANNNNTTC	1 cut(s)	23
AspLEI	GCGC	1 cut(s)	547
AspS9I	GGNCC	4 cut(s)	268, 395, 404, 701
AsuC2I	CCSGG	2 cut(s)	393, 973
AvaII	GGWCC	4 cut(s)	268, 395, 404, 701
BalI	TGGCCA	1 cut(s)	811
BauI	CACGAG	1 cut(s)	40
Bbv12I	GWGCWC	1 cut(s)	286
BbvI	GCAGC	1 cut(s)	101
BccI	CCATC	8 cut(s)	151, 446, 473, 692, 801, 820, 923, 998
BceAI	ACGGC	1 cut(s)	130
BciT130I	CCWGG	1 cut(s)	272
BcnI	CCSGG	2 cut(s)	393, 973
BcoDI	GTCTC	4 cut(s)	435, 543, 585, 794
BcuI	ACTAGT	1 cut(s)	71
BfaI	CTAG	2 cut(s)	72, 656
BisI	GCNGC	3 cut(s)	87, 90, 232
BlsI	GCNGC	3 cut(s)	88, 91, 233
Bme1390I	CCNGG	3 cut(s)	272, 393, 973
Bme18I	GGWCC	4 cut(s)	268, 395, 404, 701
BmgBI	CACGTC	1 cut(s)	537
BmgT120I	GGNCC	4 cut(s)	268, 395, 404, 701
BmiI	GGNNCC	1 cut(s)	269
BmrFI	CCNGG	3 cut(s)	272, 393, 973
BmsI	GCATC	2 cut(s)	641, 718
BpmI	CTGGAG	1 cut(s)	546
Bpu10I	CCTNAGC	1 cut(s)	906
BpuEI	CTTGAG	3 cut(s)	393, 521, 525
BpuMI	CCSGG	2 cut(s)	393, 973
BsaBI	GATNNNNATC	1 cut(s)	811
BsaI	GGTCTC	1 cut(s)	794
BsaJI	CCNNGG	4 cut(s)	121, 391, 480, 786
BsaWI	WCCGGW	3 cut(s)	418, 803, 841
Bsc4I	CCNNNNNNNGG	5 cut(s)	277, 524, 818, 825, 920
Bse118I	RCCGGY	1 cut(s)	967
Bse3DI	GCAATG	2 cut(s)	357, 762
Bse8I	GATNNNNATC	1 cut(s)	811
BseBI	CCWGG	1 cut(s)	272
BseDI	CCNNGG	4 cut(s)	121, 391, 480, 786
BseGI	GGATG	7 cut(s)	143, 387, 438, 632, 648, 812, 934
BseJI	GATNNNNATC	1 cut(s)	811
BseLI	CCNNNNNNNGG	5 cut(s)	277, 524, 818, 825, 920
BseMI	GCAATG	2 cut(s)	357, 762
BseRI	GAGGAG	1 cut(s)	110
BseX3I	CGGCCG	1 cut(s)	969
BseXI	GCAGC	1 cut(s)	101
Bsh1236I	CGCG	3 cut(s)	231, 547, 851
Bsh1285I	CGRYCG	1 cut(s)	972
BshFI	GGCC	5 cut(s)	117, 234, 683, 811, 971
BsiEI	CGRYCG	1 cut(s)	972
BsiHKAI	GWGCWC	1 cut(s)	286
BsiSI	CCGG	7 cut(s)	393, 419, 804, 819, 842, 968, 972
BslFI	GGGAC	3 cut(s)	281, 545, 988
BslI	CCNNNNNNNGG	5 cut(s)	277, 524, 818, 825, 920
BsmAI	GTCTC	4 cut(s)	435, 543, 585, 794
BsmBI	CGTCTC	1 cut(s)	543
BsmFI	GGGAC	3 cut(s)	281, 545, 988
BsmI	GAATGC	1 cut(s)	743
BsnI	GGCC	5 cut(s)	117, 234, 683, 811, 971
Bso31I	GGTCTC	1 cut(s)	794
Bsp1286I	GDGCHC	1 cut(s)	286
Bsp19I	CCATGG	1 cut(s)	786
BspACI	CCGC	4 cut(s)	87, 231, 851, 891
BspANI	GGCC	5 cut(s)	117, 234, 683, 811, 971
BspFNI	CGCG	3 cut(s)	231, 547, 851
BspLI	GGNNCC	1 cut(s)	269
BspTNI	GGTCTC	1 cut(s)	794
BsrDI	GCAATG	2 cut(s)	357, 762
BsrFI	RCCGGY	1 cut(s)	967
BssAI	RCCGGY	1 cut(s)	967
BssECI	CCNNGG	4 cut(s)	121, 391, 480, 786
BssSI	CACGAG	1 cut(s)	40
BssT1I	CCWWGG	1 cut(s)	786
Bst2BI	CACGAG	1 cut(s)	40
Bst2UI	CCWGG	1 cut(s)	272
Bst4CI	ACNGT	5 cut(s)	239, 256, 373, 481, 688
BstC8I	GCNNGC	1 cut(s)	969
BstDEI	CTNAG	4 cut(s)	15, 343, 678, 906
BstDSI	CCRYGG	2 cut(s)	480, 786
BstF5I	GGATG	7 cut(s)	143, 387, 438, 632, 648, 812, 934
BstFNI	CGCG	3 cut(s)	231, 547, 851
BstHHI	GCGC	1 cut(s)	547
BstMAI	GTCTC	4 cut(s)	435, 543, 585, 794
BstMCI	CGRYCG	1 cut(s)	972
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstNI	CCWGG	1 cut(s)	272
BstNSI	RCATGY	1 cut(s)	724
BstSCI	CCNGG	3 cut(s)	270, 391, 971
BstUI	CGCG	3 cut(s)	231, 547, 851
BstV1I	GCAGC	1 cut(s)	101
BstZI	CGGCCG	1 cut(s)	969
BsuRI	GGCC	5 cut(s)	117, 234, 683, 811, 971
BtgI	CCRYGG	2 cut(s)	480, 786
BtrI	CACGTC	1 cut(s)	537
BtsCI	GGATG	7 cut(s)	143, 387, 438, 632, 648, 812, 934
BtsIMutI	CAGTG	1 cut(s)	252
Cac8I	GCNNGC	1 cut(s)	969
CfoI	GCGC	1 cut(s)	547
Cfr10I	RCCGGY	1 cut(s)	967
Cfr13I	GGNCC	4 cut(s)	268, 395, 404, 701
CseI	GACGC	1 cut(s)	749
Csp6I	GTAC	2 cut(s)	591, 855
CviAII	CATG	3 cut(s)	424, 721, 787
CviQI	GTAC	2 cut(s)	591, 855
DdeI	CTNAG	4 cut(s)	15, 343, 678, 906
DrdI	GACNNNNNNGTC	1 cut(s)	402
DseDI	GACNNNNNNGTC	1 cut(s)	402
EaeI	YGGCCR	3 cut(s)	232, 809, 969
EagI	CGGCCG	1 cut(s)	969
EclXI	CGGCCG	1 cut(s)	969
Eco130I	CCWWGG	1 cut(s)	786
Eco31I	GGTCTC	1 cut(s)	794
Eco32I	GATATC	1 cut(s)	847
Eco47I	GGWCC	4 cut(s)	268, 395, 404, 701
Eco52I	CGGCCG	1 cut(s)	969
EcoRII	CCWGG	1 cut(s)	270
EcoRV	GATATC	1 cut(s)	847
EcoT14I	CCWWGG	1 cut(s)	786
ErhI	CCWWGG	1 cut(s)	786
Esp3I	CGTCTC	1 cut(s)	543
FaeI	CATG	3 cut(s)	427, 724, 790
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FaqI	GGGAC	3 cut(s)	281, 545, 988
FatI	CATG	3 cut(s)	423, 720, 786
FauI	CCCGC	2 cut(s)	844, 884
Fnu4HI	GCNGC	3 cut(s)	87, 90, 232
FokI	GGATG	7 cut(s)	130, 374, 425, 619, 635, 819, 941
Fsp4HI	GCNGC	3 cut(s)	87, 90, 232
FspBI	CTAG	2 cut(s)	72, 656
GlaI	GCGC	1 cut(s)	546
GluI	GCNGC	3 cut(s)	87, 90, 232
GsuI	CTGGAG	1 cut(s)	546
HaeIII	GGCC	5 cut(s)	117, 234, 683, 811, 971
HapII	CCGG	7 cut(s)	393, 419, 804, 819, 842, 968, 972
HgaI	GACGC	1 cut(s)	749
HhaI	GCGC	1 cut(s)	547
Hin1II	CATG	3 cut(s)	427, 724, 790
Hin6I	GCGC	1 cut(s)	545
HinP1I	GCGC	1 cut(s)	545
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HinfI	GANTC	2 cut(s)	192, 496
HpaII	CCGG	7 cut(s)	393, 419, 804, 819, 842, 968, 972
Hpy166II	GTNNAC	2 cut(s)	355, 534
Hpy188I	TCNGA	4 cut(s)	125, 191, 637, 799
Hpy188III	TCNNGA	4 cut(s)	469, 500, 656, 874
Hpy8I	GTNNAC	2 cut(s)	355, 534
Hpy99I	CGWCG	1 cut(s)	692
HpyAV	CCTTC	6 cut(s)	470, 528, 679, 757, 761, 889
HpyCH4III	ACNGT	5 cut(s)	239, 256, 373, 481, 688
HpyCH4IV	ACGT	2 cut(s)	536, 947
HpyCH4V	TGCA	5 cut(s)	45, 323, 427, 731, 944
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpyF3I	CTNAG	4 cut(s)	15, 343, 678, 906
HpySE526I	ACGT	2 cut(s)	536, 947
Hsp92II	CATG	3 cut(s)	427, 724, 790
HspAI	GCGC	1 cut(s)	545
KroI	GCCGGC	1 cut(s)	967
KroNI	GCCGGC	1 cut(s)	969
Lsp1109I	GCAGC	1 cut(s)	101
LweI	GCATC	2 cut(s)	641, 718
MaeI	CTAG	2 cut(s)	72, 656
MaeII	ACGT	2 cut(s)	536, 947
MaeIII	GTNAC	1 cut(s)	250
MboII	GAAGA	3 cut(s)	25, 187, 311
MhlI	GDGCHC	1 cut(s)	286
MlsI	TGGCCA	1 cut(s)	811
MluCI	AATT	1 cut(s)	868
MluNI	TGGCCA	1 cut(s)	811
MmeI	TCCRAC	1 cut(s)	660
MnlI	CCTC	9 cut(s)	22, 47, 128, 131, 205, 258, 417, 452, 663
Mox20I	TGGCCA	1 cut(s)	811
MroNI	GCCGGC	1 cut(s)	967
MroXI	GAANNNNTTC	1 cut(s)	23
MscI	TGGCCA	1 cut(s)	811
MseI	TTAA	4 cut(s)	219, 309, 833, 1006
MslI	CAYNNNNRTG	3 cut(s)	482, 748, 791
Msp20I	TGGCCA	1 cut(s)	811
MspI	CCGG	7 cut(s)	393, 419, 804, 819, 842, 968, 972
MspR9I	CCNGG	3 cut(s)	272, 393, 973
Mva1269I	GAATGC	1 cut(s)	743
MvaI	CCWGG	1 cut(s)	272
MvnI	CGCG	3 cut(s)	231, 547, 851
MwoI	GCNNNNNNNGC	1 cut(s)	290
NaeI	GCCGGC	1 cut(s)	969
NciI	CCSGG	2 cut(s)	393, 973
NcoI	CCATGG	1 cut(s)	786
NgoMIV	GCCGGC	1 cut(s)	967
NlaIII	CATG	3 cut(s)	427, 724, 790
NlaIV	GGNNCC	1 cut(s)	269
NmuCI	GTSAC	1 cut(s)	250
NspI	RCATGY	1 cut(s)	724
OliI	CACNNNNGTG	1 cut(s)	482
PciI	ACATGT	1 cut(s)	720
PcsI	WCGNNNNNNNCGW	1 cut(s)	235
PctI	GAATGC	1 cut(s)	743
PdiI	GCCGGC	1 cut(s)	969
PdmI	GAANNNNTTC	1 cut(s)	23
PfeI	GAWTC	2 cut(s)	192, 496
PflMI	CCANNNNNTGG	1 cut(s)	277
PkrI	GCNGC	3 cut(s)	88, 91, 233
PscI	ACATGT	1 cut(s)	720
Psp1406I	AACGTT	1 cut(s)	947
Psp6I	CCWGG	1 cut(s)	270
PspGI	CCWGG	1 cut(s)	270
PspN4I	GGNNCC	1 cut(s)	269
PspPI	GGNCC	4 cut(s)	268, 395, 404, 701
RsaI	GTAC	2 cut(s)	592, 856
RsaNI	GTAC	2 cut(s)	591, 855
RseI	CAYNNNNRTG	3 cut(s)	482, 748, 791
SaqAI	TTAA	4 cut(s)	219, 309, 833, 1006
SatI	GCNGC	3 cut(s)	87, 90, 232
Sau96I	GGNCC	4 cut(s)	268, 395, 404, 701
ScrFI	CCNGG	3 cut(s)	272, 393, 973
SduI	GDGCHC	1 cut(s)	286
SfaNI	GCATC	2 cut(s)	641, 718
SinI	GGWCC	4 cut(s)	268, 395, 404, 701
SmiMI	CAYNNNNRTG	3 cut(s)	482, 748, 791
SmlI	CTYRAG	3 cut(s)	408, 500, 540
SmoI	CTYRAG	3 cut(s)	408, 500, 540
SpeI	ACTAGT	1 cut(s)	71
Sse9I	AATT	1 cut(s)	868
SsiI	CCGC	4 cut(s)	87, 231, 851, 891
SspI	AATATT	2 cut(s)	244, 610
SspMI	CTAG	2 cut(s)	72, 656
StyD4I	CCNGG	3 cut(s)	270, 391, 971
StyI	CCWWGG	1 cut(s)	786
TaaI	ACNGT	5 cut(s)	239, 256, 373, 481, 688
TaiI	ACGT	2 cut(s)	539, 950
TaqI	TCGA	5 cut(s)	198, 333, 452, 470, 494
TaqII	GACCGA	1 cut(s)	392
TasI	AATT	1 cut(s)	868
TauI	GCSGC	2 cut(s)	89, 234
TfiI	GAWTC	2 cut(s)	192, 496
Tru1I	TTAA	4 cut(s)	219, 309, 833, 1006
Tru9I	TTAA	4 cut(s)	219, 309, 833, 1006
TscAI	CASTG	1 cut(s)	259
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	1 cut(s)	89
Tsp45I	GTSAC	1 cut(s)	250
TspDTI	ATGAA	4 cut(s)	355, 396, 470, 998
TspRI	CASTG	1 cut(s)	259
Van91I	CCANNNNNTGG	1 cut(s)	277
VpaK11BI	GGWCC	4 cut(s)	268, 395, 404, 701
XapI	RAATTY	1 cut(s)	868
XbaI	TCTAGA	1 cut(s)	655
XceI	RCATGY	1 cut(s)	724
XcmI	CCANNNNNNNNNTGG	1 cut(s)	922
XmnI	GAANNNNTTC	1 cut(s)	23
XspI	CTAG	2 cut(s)	72, 656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.