Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001086

Physical Location & Seq

Genomic Coordinates Reverse (-)

17460009 .. 17461031

Gene Structure 1023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1216300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGCACCATTGCATTGGGTTGCAATCGTTCTCTCCTTTGTAGCAAGTATTCAAAACTATGCAGGCCATATGGAAGCATCAGCTGACATAGGCGTTTGCTATGGAATGCTAGGGAACGACCTGCCTTCTGCACCAGAAGTGATTAGCCTCTACAAACAATACGGGATTGAAAAAATGAGGCTTTTCGAACCTAACATCGCAGCACTCCAAGCGCTGAAAGGAAGCAACATCAATATCACCCTGGACATTCGAAACCAAGACTTAGCAGATTTGGCAGCAAGTCAAGATGCCGTGAACTCATGGTTTAATACCAATGTAGAACCCTACCTAAATGACATTAACTTCAACTTCATTGCTGTTGGTAATGAGGTTATTCCTGGTTCCTTGGGAGGGTATGTCTTGCCTGTAATGAATTATCTACAAAAAATCCTCGACGATAAAAACTTACACGGTATTAAAGTGACAACCGTTTTGCCCGGAAATGCCTTACAATCTTCCTATCCGCCTTCGAGTGGTGCTTTCACATCAGAAGCAAGCAGTGTTTTGAGTGGCATTCTTTCATTTTTATCCGCGAAAGGGTCACCCCTTATGATCAATGTGTATCCTTACTTCGCCTATGCATCAGACCCTACGGATGTACGCTTGGACTACGCGCAATTCACTGCAAAAAGCGCCGTGGTTCGGGACGGGTCGTTGAGCTATTACAACCTGTTTGATGCCATGGTTGATGCTTTTTTCGCGGCAATGGAGAAAGCCGGAAGGGGTGATGTCGGTGTTGTGGTGTCAGAGAGTGGTTGGCCTTCAGACGGGAATGGAAATTTCACCACTCCAAAACTTGCAGGGACATATAACAGGAATTTTGTGAAACACATAACCTCGAAAGTAGGGACTCCAAAAAAACCTGGTGCTTACATTGAAGGGTACATTTTTGCCATGTTCAATGAGAATCAGAAACCTAGTGGCGTGGAGCAACATTGGGGACTTTTTTATCCTAACAAGCAACCTGTTTACCCTGTATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008422 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

341

Amino Acids

36.98

Weight (kDa)

5.23

Isoelectric Point (pI)

34.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	30 - 339	4e-98	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33220 AT5G20330 AT5G20340 AT5G20390 AT5G20560
fragaria_vesca	FvH4_1g08530 FvH4_7g03000
malus_domestica	MD00G1142700.v1.1 MD00G1142800.v1.1 MD02G1089200.v1.1 MD02G1089400.v1.1 MD02G1089600.v1.1 MD15G1216300.v1.1
prunus_persica	Prupe.7G200400_v2.0.a1 Prupe.7G200500_v2.0.a1 Prupe.7G200700_v2.0.a1
pyrus_communis	pycom02g07140
rosa_chinensis	RchiOBHm_Chr2g0094651 RchiOBHm_Chr2g0094671 RchiOBHm_Chr2g0094681 RchiOBHm_Chr2g0094691 RchiOBHm_Chr2g0094721 RchiOBHm_Chr6g0274281
rosa_laevigata	RLG00000013556 RLG00000016508 RLG00000016509 RLG00000016513
rosa_multiflora	Rmu_sc0004359.1_g000021 Rmu_sc0004359.1_g000026 Rmu_sc0004359.1_g000028 Rmu_sc0005132.1_g000025 Rmu_sc0006422.1_g000002 Rmu_sc0006422.1_g000003 Rmu_sc0006422.1_g000013
rosa_roxburghii	Rroxscaffold_2G00147000 Rroxscaffold_2G00147010 Rroxscaffold_2G00147020
rosa_rugosa	Rorug02G0045800 Rorug02G0046000 Rorug02G0046200 Rorug06G0080800
rosa_samantha	Rh2AG093400 Rh2AG093500 Rh2AG093600 Rh2BG093800 Rh2BG093900 Rh2BG094100 Rh2CG096300 Rh2CG096400 Rh2CG096500 Rh2DG092600 Rh2DG092700 Rh2DG092800 Rh2DG093000 Rh6AG195500
rosa_wichuraiana	Rw0G003530 Rw0G003540 Rw0G004780 Rw6G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	129
AccB1I	GGYRCC	1 cut(s)	4
AccII	CGCG	3 cut(s)	572, 653, 740
AciI	CCGC	3 cut(s)	503, 570, 740
AcsI	RAATTY	2 cut(s)	817, 856
AcuI	CTGAAG	1 cut(s)	786
AfaI	GTAC	2 cut(s)	639, 923
AfeI	AGCGCT	1 cut(s)	213
AfiI	CCNNNNNNNGG	5 cut(s)	390, 512, 576, 681, 806
AgsI	TTSAA	5 cut(s)	53, 170, 346, 917, 940
AjnI	CCWGG	3 cut(s)	240, 376, 901
AluBI	AGCT	2 cut(s)	83, 699
AluI	AGCT	2 cut(s)	83, 699
Aor51HI	AGCGCT	1 cut(s)	213
AoxI	GGCC	2 cut(s)	64, 797
ApeKI	GCWGC	2 cut(s)	200, 275
ApoI	RAATTY	2 cut(s)	817, 856
ArsI	GACNNNNNNTTYG	2 cut(s)	454, 486
AspLEI	GCGC	3 cut(s)	214, 655, 674
AsuC2I	CCSGG	1 cut(s)	477
AsuHPI	GGTGA	4 cut(s)	229, 573, 776, 814
AsuII	TTCGAA	2 cut(s)	186, 250
BanI	GGYRCC	1 cut(s)	4
BarI	GAAGNNNNNNTAC	2 cut(s)	593, 625
BbvI	GCAGC	2 cut(s)	212, 287
BceAI	ACGGC	2 cut(s)	275, 659
BciT130I	CCWGG	3 cut(s)	242, 378, 903
BciVI	GTATCC	1 cut(s)	612
BclI	TGATCA	1 cut(s)	591
BcnI	CCSGG	1 cut(s)	477
BfaI	CTAG	2 cut(s)	110, 957
BfoI	RGCGCY	2 cut(s)	215, 675
BfuAI	ACCTGC	1 cut(s)	129
BfuI	GTATCC	1 cut(s)	612
BisI	GCNGC	3 cut(s)	201, 276, 741
BlsI	GCNGC	3 cut(s)	202, 277, 742
Bme1390I	CCNGG	4 cut(s)	242, 378, 477, 903
BmiI	GGNNCC	2 cut(s)	6, 382
BmrFI	CCNGG	4 cut(s)	242, 378, 477, 903
BmsI	GCATC	5 cut(s)	86, 277, 629, 706, 718
Bpu14I	TTCGAA	2 cut(s)	186, 250
BpuMI	CCSGG	1 cut(s)	477
BsaJI	CCNNGG	4 cut(s)	240, 384, 675, 720
BsaXI	ACNNNNNCTCC	2 cut(s)	381, 411
Bsc4I	CCNNNNNNNGG	5 cut(s)	390, 512, 576, 681, 806
Bse3DI	GCAATG	3 cut(s)	8, 351, 750
BseBI	CCWGG	3 cut(s)	242, 378, 903
BseDI	CCNNGG	4 cut(s)	240, 384, 675, 720
BseGI	GGATG	1 cut(s)	640
BseLI	CCNNNNNNNGG	5 cut(s)	390, 512, 576, 681, 806
BseMI	GCAATG	3 cut(s)	8, 351, 750
BseXI	GCAGC	2 cut(s)	212, 287
BsgI	GTGCAG	1 cut(s)	114
Bsh1236I	CGCG	3 cut(s)	572, 653, 740
BshFI	GGCC	2 cut(s)	66, 799
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	2 cut(s)	477, 756
BslFI	GGGAC	4 cut(s)	698, 856, 901, 993
BslI	CCNNNNNNNGG	5 cut(s)	390, 512, 576, 681, 806
BsmFI	GGGAC	4 cut(s)	698, 856, 901, 993
BsmI	GAATGC	2 cut(s)	111, 552
BsnI	GGCC	2 cut(s)	66, 799
Bsp119I	TTCGAA	2 cut(s)	186, 250
Bsp143I	GATC	1 cut(s)	591
Bsp19I	CCATGG	1 cut(s)	720
BspACI	CCGC	3 cut(s)	503, 570, 740
BspANI	GGCC	2 cut(s)	66, 799
BspFNI	CGCG	3 cut(s)	572, 653, 740
BspLI	GGNNCC	2 cut(s)	6, 382
BspMI	ACCTGC	1 cut(s)	129
BspT104I	TTCGAA	2 cut(s)	186, 250
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	3 cut(s)	8, 351, 750
BssECI	CCNNGG	4 cut(s)	240, 384, 675, 720
BssMI	GATC	1 cut(s)	591
BssT1I	CCWWGG	2 cut(s)	384, 720
Bst2UI	CCWGG	3 cut(s)	242, 378, 903
Bst4CI	ACNGT	2 cut(s)	452, 469
BstBI	TTCGAA	2 cut(s)	186, 250
BstC8I	GCNNGC	2 cut(s)	64, 535
BstDEI	CTNAG	1 cut(s)	262
BstDSI	CCRYGG	2 cut(s)	675, 720
BstEII	GGTNACC	1 cut(s)	579
BstF5I	GGATG	1 cut(s)	640
BstFNI	CGCG	3 cut(s)	572, 653, 740
BstH2I	RGCGCY	2 cut(s)	215, 675
BstHHI	GCGC	3 cut(s)	214, 655, 674
BstKTI	GATC	1 cut(s)	594
BstMBI	GATC	1 cut(s)	591
BstMWI	GCNNNNNNNGC	4 cut(s)	209, 272, 671, 737
BstNI	CCWGG	3 cut(s)	242, 378, 903
BstPI	GGTNACC	1 cut(s)	579
BstSCI	CCNGG	4 cut(s)	240, 376, 475, 901
BstUI	CGCG	3 cut(s)	572, 653, 740
BstV1I	GCAGC	2 cut(s)	212, 287
BstXI	CCANNNNNNTGG	1 cut(s)	15
BsuI	GTATCC	1 cut(s)	612
BsuRI	GGCC	2 cut(s)	66, 799
BtgI	CCRYGG	2 cut(s)	675, 720
BtgZI	GCGATG	1 cut(s)	181
BtsCI	GGATG	1 cut(s)	640
BtsI	GCAGTG	2 cut(s)	544, 660
BtsIMutI	CAGTG	2 cut(s)	544, 660
BveI	ACCTGC	1 cut(s)	129
Cac8I	GCNNGC	2 cut(s)	64, 535
CfoI	GCGC	3 cut(s)	214, 655, 674
CsiI	ACCWGGT	1 cut(s)	901
Csp6I	GTAC	2 cut(s)	638, 922
CviAII	CATG	3 cut(s)	300, 721, 934
CviJI	RGCY	7 cut(s)	66, 83, 147, 181, 699, 755, 799
CviKI_1	RGCY	7 cut(s)	66, 83, 147, 181, 699, 755, 799
CviQI	GTAC	2 cut(s)	638, 922
DdeI	CTNAG	1 cut(s)	262
DpnI	GATC	1 cut(s)	593
DpnII	GATC	1 cut(s)	591
EciI	GGCGGA	1 cut(s)	492
Eco130I	CCWWGG	2 cut(s)	384, 720
Eco47III	AGCGCT	1 cut(s)	213
Eco57I	CTGAAG	1 cut(s)	786
Eco91I	GGTNACC	1 cut(s)	579
EcoO65I	GGTNACC	1 cut(s)	579
EcoRII	CCWGG	3 cut(s)	240, 376, 901
EcoT14I	CCWWGG	2 cut(s)	384, 720
EcoT22I	ATGCAT	1 cut(s)	622
ErhI	CCWWGG	2 cut(s)	384, 720
FaeI	CATG	3 cut(s)	303, 724, 937
FaqI	GGGAC	4 cut(s)	698, 856, 901, 993
FatI	CATG	3 cut(s)	299, 720, 933
FauNDI	CATATG	1 cut(s)	69
FbaI	TGATCA	1 cut(s)	591
Fnu4HI	GCNGC	3 cut(s)	201, 276, 741
FokI	GGATG	1 cut(s)	647
Fsp4HI	GCNGC	3 cut(s)	201, 276, 741
FspBI	CTAG	2 cut(s)	110, 957
GlaI	GCGC	3 cut(s)	213, 654, 673
GluI	GCNGC	3 cut(s)	201, 276, 741
HaeII	RGCGCY	2 cut(s)	215, 675
HaeIII	GGCC	2 cut(s)	66, 799
HapII	CCGG	2 cut(s)	477, 756
HhaI	GCGC	3 cut(s)	214, 655, 674
Hin1II	CATG	3 cut(s)	303, 724, 937
Hin6I	GCGC	3 cut(s)	212, 653, 672
HinP1I	GCGC	3 cut(s)	212, 653, 672
HinfI	GANTC	2 cut(s)	889, 946
HpaII	CCGG	2 cut(s)	477, 756
HphI	GGTGA	4 cut(s)	229, 573, 776, 814
Hpy166II	GTNNAC	2 cut(s)	295, 1009
Hpy188I	TCNGA	5 cut(s)	529, 625, 787, 805, 951
Hpy188III	TCNNGA	2 cut(s)	284, 683
Hpy8I	GTNNAC	2 cut(s)	295, 1009
Hpy99I	CGWCG	1 cut(s)	437
HpyAV	CCTTC	5 cut(s)	135, 516, 753, 810, 911
HpyCH4III	ACNGT	2 cut(s)	452, 469
HpyCH4V	TGCA	7 cut(s)	13, 23, 62, 131, 620, 665, 839
HpyF10VI	GCNNNNNNNGC	4 cut(s)	209, 272, 671, 737
HpyF3I	CTNAG	1 cut(s)	262
Hsp92II	CATG	3 cut(s)	303, 724, 937
HspAI	GCGC	3 cut(s)	212, 653, 672
Ksp22I	TGATCA	1 cut(s)	591
Kzo9I	GATC	1 cut(s)	591
LmnI	GCTCC	1 cut(s)	967
Lsp1109I	GCAGC	2 cut(s)	212, 287
LweI	GCATC	5 cut(s)	86, 277, 629, 706, 718
MabI	ACCWGGT	1 cut(s)	901
MaeI	CTAG	2 cut(s)	110, 957
MaeIII	GTNAC	2 cut(s)	460, 579
MalI	GATC	1 cut(s)	593
MboI	GATC	1 cut(s)	591
MboII	GAAGA	1 cut(s)	486
MluCI	AATT	4 cut(s)	412, 656, 817, 856
MlyI	GAGTC	1 cut(s)	883
MnlI	CCTC	6 cut(s)	158, 171, 361, 383, 440, 886
Mph1103I	ATGCAT	1 cut(s)	622
MseI	TTAA	4 cut(s)	306, 339, 456, 1021
MspA1I	CMGCKG	1 cut(s)	83
MspI	CCGG	2 cut(s)	477, 756
MspR9I	CCNGG	4 cut(s)	242, 378, 477, 903
Mva1269I	GAATGC	2 cut(s)	111, 552
MvaI	CCWGG	3 cut(s)	242, 378, 903
MvnI	CGCG	3 cut(s)	572, 653, 740
MwoI	GCNNNNNNNGC	4 cut(s)	209, 272, 671, 737
NciI	CCSGG	1 cut(s)	477
NcoI	CCATGG	1 cut(s)	720
NdeI	CATATG	1 cut(s)	69
NdeII	GATC	1 cut(s)	591
NlaIII	CATG	3 cut(s)	303, 724, 937
NlaIV	GGNNCC	2 cut(s)	6, 382
NmuCI	GTSAC	2 cut(s)	460, 579
NsiI	ATGCAT	1 cut(s)	622
NspV	TTCGAA	2 cut(s)	186, 250
PctI	GAATGC	2 cut(s)	111, 552
PfeI	GAWTC	1 cut(s)	946
PkrI	GCNGC	3 cut(s)	202, 277, 742
PleI	GAGTC	1 cut(s)	883
PpsI	GAGTC	1 cut(s)	883
Psp6I	CCWGG	3 cut(s)	240, 376, 901
PspEI	GGTNACC	1 cut(s)	579
PspGI	CCWGG	3 cut(s)	240, 376, 901
PspN4I	GGNNCC	2 cut(s)	6, 382
PvuII	CAGCTG	1 cut(s)	83
RsaI	GTAC	2 cut(s)	639, 923
RsaNI	GTAC	2 cut(s)	638, 922
SaqAI	TTAA	4 cut(s)	306, 339, 456, 1021
SatI	GCNGC	3 cut(s)	201, 276, 741
Sau3AI	GATC	1 cut(s)	591
SchI	GAGTC	1 cut(s)	883
ScrFI	CCNGG	4 cut(s)	242, 378, 477, 903
SexAI	ACCWGGT	1 cut(s)	901
SfaNI	GCATC	5 cut(s)	86, 277, 629, 706, 718
SfuI	TTCGAA	2 cut(s)	186, 250
Sse9I	AATT	4 cut(s)	412, 656, 817, 856
SsiI	CCGC	3 cut(s)	503, 570, 740
SspMI	CTAG	2 cut(s)	110, 957
StyD4I	CCNGG	4 cut(s)	240, 376, 475, 901
StyI	CCWWGG	2 cut(s)	384, 720
TaaI	ACNGT	2 cut(s)	452, 469
TaqI	TCGA	5 cut(s)	186, 250, 432, 509, 878
TasI	AATT	4 cut(s)	412, 656, 817, 856
TauI	GCSGC	1 cut(s)	743
TfiI	GAWTC	1 cut(s)	946
Tru1I	TTAA	4 cut(s)	306, 339, 456, 1021
Tru9I	TTAA	4 cut(s)	306, 339, 456, 1021
TscAI	CASTG	2 cut(s)	544, 667
TseFI	GTSAC	2 cut(s)	460, 579
TseI	GCWGC	2 cut(s)	200, 275
Tsp45I	GTSAC	2 cut(s)	460, 579
TspDTI	ATGAA	3 cut(s)	340, 425, 549
TspGWI	ACGGA	1 cut(s)	647
TspRI	CASTG	2 cut(s)	544, 667
XapI	RAATTY	2 cut(s)	817, 856
XspI	CTAG	2 cut(s)	110, 957
Zsp2I	ATGCAT	1 cut(s)	622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.