Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001086

Physical Location & Seq

Genomic Coordinates Reverse (-)

7243154 .. 7254911

Gene Structure 11758 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG092600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGAAGGGACACCAAAAAGACCCGATGAACCTATTGAAGCGTTTATTTTTGCCATGTTCAATGAGAACCATAAACCTAAGGGCGAGGAGCAACATTTTGGTCTCTTCTATCCCAACATGGAACCTAAAGTGATGGCAGTATCGTACTGGATTGCAATCATTCTGTCACTTTTAGCAACAATTGACAACCATGTATTTCTACTGGAAGCTTCAGACGTAGGAGTTTGCTATGGAACGTTAGGGAATGACCTCCCTGCAGCAACAGAAGTTGTCAATCTCTACAAGAAACATAGTATCACCAAAATGAGGCTTTTTGATCCAAACACAGCAGCCCTTCAGGCACTGAAAGGGGGCGGAATCAGTGTCATACTTGGCATTCAAAACCAATACTTACCCGCACTGGCAGCAAGTCAAGAAGCTGTGAACGCATGGTTCACCACCAATGTTAAGCCTTACCTTGATGGTATTGAACTCAATTATAATGCGGTTGGCAATGAGGTTATTCCCGGGCCCTTAGGCAACTACGTTTTTCCTGTAATGAGGTTTTTACCGACTATGCTTGATGGCAGAGAGCTGAGTGGGATTAAGGTTACCACAGTTGTTCCAGGAACTGCCTTGGGATCTTCATACCCGCCTTCAAGTGGTGTATTCGCAGCGGAGGCTGTTGAAGTCATGACCAGCATTGTTCAATTTTTAGCGTCAACCAATTCATCTCTTATGATCAATGCGTACCCTTACTTTGCCTACAAGTCAGACCCTGCCAATGTTCACTTGGACTATGCTCTATTCACTACTAAAACCTCGGTGATTCAAGATGGACCACTCGGCTACTACAACCTGTTGGATGCCATAGTGGATTCGTTTTACACGGCAATGAAGAAAGTAGGCAGCCCTAATGTCACGGTTGTGGTGTCTGAAAGTGGTTGGCCTTCTGCTGGGAGCGGACAGTTCACCACCCCAGAACTTGCAGGGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008422 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

325

Amino Acids

35.1

Weight (kDa)

4.86

Isoelectric Point (pI)

29.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	2 - 43	1.4e-11	Glycosyl hydrolases family 17
Glyco_hydro_17	PF00332	73 - 314	2.5e-68	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33220 AT5G20330 AT5G20340 AT5G20390 AT5G20560
fragaria_vesca	FvH4_1g08530 FvH4_7g03000
malus_domestica	MD00G1142700.v1.1 MD00G1142800.v1.1 MD02G1089200.v1.1 MD02G1089400.v1.1 MD02G1089600.v1.1 MD15G1216300.v1.1
prunus_persica	Prupe.7G200400_v2.0.a1 Prupe.7G200500_v2.0.a1 Prupe.7G200700_v2.0.a1
pyrus_communis	pycom02g07140
rosa_chinensis	RchiOBHm_Chr2g0094651 RchiOBHm_Chr2g0094671 RchiOBHm_Chr2g0094681 RchiOBHm_Chr2g0094691 RchiOBHm_Chr2g0094721 RchiOBHm_Chr6g0274281
rosa_laevigata	RLG00000013556 RLG00000016508 RLG00000016509 RLG00000016513
rosa_multiflora	Rmu_sc0004359.1_g000021 Rmu_sc0004359.1_g000026 Rmu_sc0004359.1_g000028 Rmu_sc0005132.1_g000025 Rmu_sc0006422.1_g000002 Rmu_sc0006422.1_g000003 Rmu_sc0006422.1_g000013
rosa_roxburghii	Rroxscaffold_2G00147000 Rroxscaffold_2G00147010 Rroxscaffold_2G00147020
rosa_rugosa	Rorug02G0045800 Rorug02G0046000 Rorug02G0046200 Rorug06G0080800
rosa_samantha	Rh2AG093400 Rh2AG093500 Rh2AG093600 Rh2BG093800 Rh2BG093900 Rh2BG094100 Rh2CG096300 Rh2CG096400 Rh2CG096500 Rh2DG092600 Rh2DG092700 Rh2DG092800 Rh2DG093000 Rh6AG195500
rosa_wichuraiana	Rw0G003530 Rw0G003540 Rw0G004780 Rw6G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	480
AccBSI	CCGCTC	1 cut(s)	942
AciI	CCGC	6 cut(s)	354, 396, 485, 632, 656, 942
AclI	AACGTT	1 cut(s)	236
AclWI	GGATC	2 cut(s)	311, 628
AcuI	CTGAAG	2 cut(s)	195, 320
AfaI	GTAC	2 cut(s)	146, 731
AfiI	CCNNNNNNNGG	3 cut(s)	306, 641, 935
AgsI	TTSAA	8 cut(s)	38, 61, 380, 470, 639, 668, 689, 812
AjnI	CCWGG	1 cut(s)	604
AleI	CACNNNNGTG	1 cut(s)	905
AluBI	AGCT	3 cut(s)	209, 419, 574
AluI	AGCT	3 cut(s)	209, 419, 574
Alw26I	GTCTC	1 cut(s)	107
AlwI	GGATC	2 cut(s)	311, 628
AlwNI	CAGNNNCTG	3 cut(s)	343, 611, 758
Ama87I	CYCGRG	1 cut(s)	506
AoxI	GGCC	2 cut(s)	509, 926
ApaI	GGGCCC	1 cut(s)	513
ApeKI	GCWGC	5 cut(s)	257, 329, 404, 653, 888
AspS9I	GGNCC	3 cut(s)	509, 510, 818
AsuC2I	CCSGG	2 cut(s)	507, 508
AsuHPI	GGTGA	4 cut(s)	289, 427, 817, 943
AvaI	CYCGRG	1 cut(s)	506
AvaII	GGWCC	1 cut(s)	818
AxyI	CCTNAGG	2 cut(s)	78, 514
BaeGI	GKGCMC	1 cut(s)	513
BanII	GRGCYC	1 cut(s)	513
BbvI	GCAGC	5 cut(s)	269, 341, 416, 665, 900
BccI	CCATC	4 cut(s)	127, 455, 557, 809
BceAI	ACGGC	1 cut(s)	885
BciT130I	CCWGG	1 cut(s)	606
BclI	TGATCA	1 cut(s)	720
BcnI	CCSGG	2 cut(s)	507, 508
BcoDI	GTCTC	1 cut(s)	107
BfmI	CTRYAG	1 cut(s)	255
BglI	GCCNNNNNGGC	1 cut(s)	338
BisI	GCNGC	5 cut(s)	258, 330, 405, 654, 889
BlsI	GCNGC	5 cut(s)	259, 331, 406, 655, 890
Bme1390I	CCNGG	3 cut(s)	507, 508, 606
Bme18I	GGWCC	1 cut(s)	818
BmeT110I	CYCGRG	1 cut(s)	506
BmgT120I	GGNCC	3 cut(s)	509, 510, 818
BmiI	GGNNCC	2 cut(s)	123, 511
BmrFI	CCNGG	3 cut(s)	507, 508, 606
BmsI	GCATC	1 cut(s)	835
BpuMI	CCSGG	2 cut(s)	507, 508
BsaBI	GATNNNNATC	1 cut(s)	155
BsaI	GGTCTC	1 cut(s)	107
BsaJI	CCNNGG	3 cut(s)	506, 615, 801
Bsc4I	CCNNNNNNNGG	3 cut(s)	306, 641, 935
Bse1I	ACTGG	3 cut(s)	152, 207, 405
Bse21I	CCTNAGG	2 cut(s)	78, 514
Bse3DI	GCAATG	2 cut(s)	499, 879
Bse8I	GATNNNNATC	1 cut(s)	155
BseBI	CCWGG	1 cut(s)	606
BseDI	CCNNGG	3 cut(s)	506, 615, 801
BseGI	GGATG	1 cut(s)	850
BseJI	GATNNNNATC	1 cut(s)	155
BseLI	CCNNNNNNNGG	3 cut(s)	306, 641, 935
BseMI	GCAATG	2 cut(s)	499, 879
BseMII	CTCAG	1 cut(s)	566
BseNI	ACTGG	3 cut(s)	152, 207, 405
BseRI	GAGGAG	1 cut(s)	101
BseSI	GKGCMC	1 cut(s)	513
BseXI	GCAGC	5 cut(s)	269, 341, 416, 665, 900
BseYI	CCCAGC	1 cut(s)	935
BshFI	GGCC	2 cut(s)	511, 928
BsiHKCI	CYCGRG	1 cut(s)	506
BsiSI	CCGG	1 cut(s)	507
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	3 cut(s)	306, 641, 935
BsmAI	GTCTC	1 cut(s)	107
BsmFI	GGGAC	1 cut(s)	22
BsmI	GAATGC	1 cut(s)	375
BsnI	GGCC	2 cut(s)	511, 928
Bso31I	GGTCTC	1 cut(s)	107
BsoBI	CYCGRG	1 cut(s)	506
Bsp120I	GGGCCC	1 cut(s)	509
Bsp1286I	GDGCHC	1 cut(s)	513
Bsp143I	GATC	3 cut(s)	316, 620, 720
BspACI	CCGC	6 cut(s)	354, 396, 485, 632, 656, 942
BspANI	GGCC	2 cut(s)	511, 928
BspCNI	CTCAG	1 cut(s)	567
BspHI	TCATGA	1 cut(s)	672
BspLI	GGNNCC	2 cut(s)	123, 511
BspMAI	CTGCAG	1 cut(s)	259
BspPI	GGATC	2 cut(s)	311, 628
BspTNI	GGTCTC	1 cut(s)	107
BsrBI	CCGCTC	1 cut(s)	942
BsrDI	GCAATG	2 cut(s)	499, 879
BsrI	ACTGG	3 cut(s)	152, 207, 405
BssECI	CCNNGG	3 cut(s)	506, 615, 801
BssMI	GATC	3 cut(s)	316, 620, 720
BssT1I	CCWWGG	1 cut(s)	615
Bst2UI	CCWGG	1 cut(s)	606
Bst4CI	ACNGT	3 cut(s)	598, 904, 948
Bst6I	CTCTTC	1 cut(s)	110
BstDEI	CTNAG	3 cut(s)	78, 514, 575
BstEII	GGTNACC	1 cut(s)	589
BstF5I	GGATG	1 cut(s)	850
BstKTI	GATC	3 cut(s)	319, 623, 723
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	3 cut(s)	316, 620, 720
BstMWI	GCNNNNNNNGC	4 cut(s)	338, 404, 425, 659
BstNI	CCWGG	1 cut(s)	606
BstPI	GGTNACC	1 cut(s)	589
BstSCI	CCNGG	3 cut(s)	505, 506, 604
BstSFI	CTRYAG	1 cut(s)	255
BstSLI	GKGCMC	1 cut(s)	513
BstV1I	GCAGC	5 cut(s)	269, 341, 416, 665, 900
BstX2I	RGATCY	1 cut(s)	620
BstYI	RGATCY	1 cut(s)	620
Bsu36I	CCTNAGG	2 cut(s)	78, 514
BsuRI	GGCC	2 cut(s)	511, 928
BtsCI	GGATG	1 cut(s)	850
BtsIMutI	CAGTG	3 cut(s)	341, 367, 398
CaiI	CAGNNNCTG	3 cut(s)	343, 611, 758
CciI	TCATGA	1 cut(s)	672
Cfr13I	GGNCC	3 cut(s)	509, 510, 818
Cfr9I	CCCGGG	1 cut(s)	506
CseI	GACGC	1 cut(s)	687
Csp6I	GTAC	2 cut(s)	145, 730
CviAII	CATG	5 cut(s)	55, 118, 191, 429, 673
CviQI	GTAC	2 cut(s)	145, 730
DdeI	CTNAG	3 cut(s)	78, 514, 575
DpnI	GATC	3 cut(s)	318, 622, 722
DpnII	GATC	3 cut(s)	316, 620, 720
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
EciI	GGCGGA	1 cut(s)	369
Eco130I	CCWWGG	1 cut(s)	615
Eco24I	GRGCYC	1 cut(s)	513
Eco31I	GGTCTC	1 cut(s)	107
Eco47I	GGWCC	1 cut(s)	818
Eco57I	CTGAAG	2 cut(s)	195, 320
Eco81I	CCTNAGG	2 cut(s)	78, 514
Eco88I	CYCGRG	1 cut(s)	506
Eco91I	GGTNACC	1 cut(s)	589
EcoO109I	RGGNCCY	1 cut(s)	510
EcoO65I	GGTNACC	1 cut(s)	589
EcoRII	CCWGG	1 cut(s)	604
EcoT14I	CCWWGG	1 cut(s)	615
EcoT38I	GRGCYC	1 cut(s)	513
ErhI	CCWWGG	1 cut(s)	615
FaeI	CATG	5 cut(s)	58, 121, 194, 432, 676
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	5 cut(s)	54, 117, 190, 428, 672
FauI	CCCGC	2 cut(s)	403, 639
FbaI	TGATCA	1 cut(s)	720
Fnu4HI	GCNGC	5 cut(s)	258, 330, 405, 654, 889
FokI	GGATG	1 cut(s)	857
FriOI	GRGCYC	1 cut(s)	513
Fsp4HI	GCNGC	5 cut(s)	258, 330, 405, 654, 889
GluI	GCNGC	5 cut(s)	258, 330, 405, 654, 889
GsaI	CCCAGC	1 cut(s)	939
HaeIII	GGCC	2 cut(s)	511, 928
HapII	CCGG	1 cut(s)	507
HgaI	GACGC	1 cut(s)	687
Hin1II	CATG	5 cut(s)	58, 121, 194, 432, 676
HincII	GTYRAC	1 cut(s)	702
HindII	GTYRAC	1 cut(s)	702
HindIII	AAGCTT	1 cut(s)	207
HinfI	GANTC	3 cut(s)	357, 808, 857
HpaII	CCGG	1 cut(s)	507
HphI	GGTGA	4 cut(s)	289, 427, 817, 943
Hpy166II	GTNNAC	5 cut(s)	424, 435, 702, 769, 951
Hpy188I	TCNGA	3 cut(s)	214, 754, 916
Hpy188III	TCNNGA	3 cut(s)	413, 673, 812
Hpy8I	GTNNAC	5 cut(s)	424, 435, 702, 769, 951
HpyAV	CCTTC	3 cut(s)	344, 645, 939
HpyCH4III	ACNGT	3 cut(s)	598, 904, 948
HpyCH4IV	ACGT	3 cut(s)	216, 236, 525
HpyCH4V	TGCA	3 cut(s)	155, 257, 968
HpyF10VI	GCNNNNNNNGC	4 cut(s)	338, 404, 425, 659
HpyF3I	CTNAG	3 cut(s)	78, 514, 575
HpySE526I	ACGT	3 cut(s)	216, 236, 525
Hsp92II	CATG	5 cut(s)	58, 121, 194, 432, 676
Ksp22I	TGATCA	1 cut(s)	720
Kzo9I	GATC	3 cut(s)	316, 620, 720
LmnI	GCTCC	2 cut(s)	88, 939
Lsp1109I	GCAGC	5 cut(s)	269, 341, 416, 665, 900
LweI	GCATC	1 cut(s)	835
MaeII	ACGT	3 cut(s)	216, 236, 525
MaeIII	GTNAC	3 cut(s)	165, 589, 898
MalI	GATC	3 cut(s)	318, 622, 722
MbiI	CCGCTC	1 cut(s)	942
MboI	GATC	3 cut(s)	316, 620, 720
MboII	GAAGA	3 cut(s)	97, 615, 889
MfeI	CAATTG	1 cut(s)	180
MflI	RGATCY	1 cut(s)	620
MhlI	GDGCHC	1 cut(s)	513
MluCI	AATT	4 cut(s)	180, 475, 689, 706
MmeI	TCCRAC	1 cut(s)	822
MnlI	CCTC	7 cut(s)	79, 260, 300, 490, 534, 652, 811
MseI	TTAA	2 cut(s)	447, 585
MslI	CAYNNNNRTG	3 cut(s)	302, 872, 905
MspA1I	CMGCKG	1 cut(s)	656
MspI	CCGG	1 cut(s)	507
MspR9I	CCNGG	3 cut(s)	507, 508, 606
MunI	CAATTG	1 cut(s)	180
Mva1269I	GAATGC	1 cut(s)	375
MvaI	CCWGG	1 cut(s)	606
MwoI	GCNNNNNNNGC	4 cut(s)	338, 404, 425, 659
NciI	CCSGG	2 cut(s)	507, 508
NdeII	GATC	3 cut(s)	316, 620, 720
NlaIII	CATG	5 cut(s)	58, 121, 194, 432, 676
NlaIV	GGNNCC	2 cut(s)	123, 511
NmeAIII	GCCGAG	1 cut(s)	804
NmuCI	GTSAC	2 cut(s)	165, 898
OliI	CACNNNNGTG	1 cut(s)	905
PagI	TCATGA	1 cut(s)	672
PctI	GAATGC	1 cut(s)	375
PfeI	GAWTC	3 cut(s)	357, 808, 857
PfoI	TCCNGGA	1 cut(s)	604
PkrI	GCNGC	5 cut(s)	259, 331, 406, 655, 890
PsiI	TTATAA	1 cut(s)	480
Psp1406I	AACGTT	1 cut(s)	236
Psp6I	CCWGG	1 cut(s)	604
PspEI	GGTNACC	1 cut(s)	589
PspFI	CCCAGC	1 cut(s)	935
PspGI	CCWGG	1 cut(s)	604
PspN4I	GGNNCC	2 cut(s)	123, 511
PspOMI	GGGCCC	1 cut(s)	509
PspPI	GGNCC	3 cut(s)	509, 510, 818
PstI	CTGCAG	1 cut(s)	259
PstNI	CAGNNNCTG	3 cut(s)	343, 611, 758
PsuI	RGATCY	1 cut(s)	620
RsaI	GTAC	2 cut(s)	146, 731
RsaNI	GTAC	2 cut(s)	145, 730
RseI	CAYNNNNRTG	3 cut(s)	302, 872, 905
SaqAI	TTAA	2 cut(s)	447, 585
SatI	GCNGC	5 cut(s)	258, 330, 405, 654, 889
Sau3AI	GATC	3 cut(s)	316, 620, 720
Sau96I	GGNCC	3 cut(s)	509, 510, 818
ScrFI	CCNGG	3 cut(s)	507, 508, 606
SduI	GDGCHC	1 cut(s)	513
SfaNI	GCATC	1 cut(s)	835
SfcI	CTRYAG	1 cut(s)	255
SinI	GGWCC	1 cut(s)	818
SmaI	CCCGGG	1 cut(s)	508
SmiMI	CAYNNNNRTG	3 cut(s)	302, 872, 905
Sse9I	AATT	4 cut(s)	180, 475, 689, 706
SsiI	CCGC	6 cut(s)	354, 396, 485, 632, 656, 942
StyD4I	CCNGG	3 cut(s)	505, 506, 604
StyI	CCWWGG	1 cut(s)	615
TaaI	ACNGT	3 cut(s)	598, 904, 948
TaiI	ACGT	3 cut(s)	219, 239, 528
TasI	AATT	4 cut(s)	180, 475, 689, 706
TfiI	GAWTC	3 cut(s)	357, 808, 857
Tru1I	TTAA	2 cut(s)	447, 585
Tru9I	TTAA	2 cut(s)	447, 585
TscAI	CASTG	3 cut(s)	348, 367, 405
TseFI	GTSAC	2 cut(s)	165, 898
TseI	GCWGC	5 cut(s)	257, 329, 404, 653, 888
Tsp45I	GTSAC	2 cut(s)	165, 898
TspDTI	ATGAA	4 cut(s)	42, 615, 699, 890
TspMI	CCCGGG	1 cut(s)	506
TspRI	CASTG	3 cut(s)	348, 367, 405
VpaK11BI	GGWCC	1 cut(s)	818
XcmI	CCANNNNNNNNNTGG	1 cut(s)	769
XmaI	CCCGGG	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.